Wall clock time and date at job start Wed Apr 1 2020 01:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.57529 * 2 1 4 4 C 1.53105 * 109.59769 * 120.12228 * 2 1 3 5 5 O 1.42906 * 109.48510 * 177.42031 * 4 2 1 6 6 C 1.42907 * 114.09750 * 298.88655 * 5 4 2 7 7 C 1.53092 * 109.41203 * 61.15994 * 6 5 4 8 8 C 1.53178 * 109.51965 * 239.84475 * 2 1 3 9 9 H 1.08999 * 109.54640 * 303.07029 * 8 2 1 10 10 C 1.50698 * 109.54533 * 63.24792 * 8 2 1 11 11 O 1.21287 * 119.99727 * 7.17073 * 10 8 2 12 12 N 1.34772 * 120.00466 * 187.44583 * 10 8 2 13 13 C 1.46500 * 119.99690 * 5.84929 * 12 10 8 14 14 C 1.46507 * 120.00431 * 185.85088 * 12 10 8 15 15 C 1.52996 * 109.46881 * 90.00071 * 14 12 10 16 16 N 1.46900 * 109.46789 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00320 * 66.04147 * 16 15 14 18 18 C 1.46897 * 111.00050 * 189.99891 * 16 15 14 19 19 C 1.50695 * 109.47347 * 169.99654 * 18 16 15 20 20 O 1.21289 * 120.00065 * 0.02562 * 19 18 16 21 21 N 1.34784 * 120.00390 * 179.97438 * 19 18 16 22 22 C 1.37093 * 120.00411 * 180.02562 * 21 19 18 23 23 H 1.08007 * 119.99864 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00342 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99824 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00179 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47035 * 60.00233 * 26 24 22 28 28 H 1.48500 * 109.46974 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47297 * 300.00110 * 26 24 22 30 30 H 1.08993 * 109.47270 * 180.15396 * 1 2 3 31 31 H 1.08997 * 109.46989 * 300.15659 * 1 2 3 32 32 H 1.09006 * 109.47099 * 60.15152 * 1 2 3 33 33 H 1.08998 * 109.40372 * 57.44121 * 4 2 1 34 34 H 1.08994 * 109.49332 * 297.45000 * 4 2 1 35 35 H 1.09003 * 109.48244 * 301.18121 * 6 5 4 36 36 H 1.08998 * 109.47972 * 181.14128 * 6 5 4 37 37 H 1.09009 * 109.51921 * 182.48765 * 7 6 5 38 38 H 1.09002 * 109.57562 * 62.32939 * 7 6 5 39 39 H 1.09004 * 109.47138 * 84.33771 * 13 12 10 40 40 H 1.09001 * 109.47341 * 204.33626 * 13 12 10 41 41 H 1.08996 * 109.47750 * 324.33674 * 13 12 10 42 42 H 1.09005 * 109.46844 * 209.99712 * 14 12 10 43 43 H 1.08996 * 109.46828 * 329.99625 * 14 12 10 44 44 H 1.09001 * 109.47230 * 299.99974 * 15 14 12 45 45 H 1.08996 * 109.47753 * 60.00121 * 15 14 12 46 46 H 1.09003 * 109.46549 * 60.00125 * 17 16 15 47 47 H 1.08999 * 109.47182 * 179.97438 * 17 16 15 48 48 H 1.08994 * 109.47175 * 300.00085 * 17 16 15 49 49 H 1.08999 * 109.47019 * 290.00123 * 18 16 15 50 50 H 1.09005 * 109.47413 * 49.99875 * 18 16 15 51 51 H 0.97005 * 119.99416 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00199 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0435 -0.7238 1.2476 5 8 3.4713 -0.7751 1.2151 6 6 4.0044 -1.4836 0.0944 7 6 3.5715 -0.7891 -1.1994 8 6 2.0418 -0.7253 -1.2484 9 1 1.6354 -1.7363 -1.2751 10 6 1.6078 0.0253 -2.4810 11 8 1.0674 1.1058 -2.3741 12 7 1.8150 -0.5067 -3.7018 13 6 2.3440 -1.8670 -3.8278 14 6 1.5114 0.2754 -4.9029 15 6 2.7502 1.0703 -5.3204 16 7 2.4456 1.8549 -6.5244 17 6 1.4451 2.8917 -6.2380 18 6 3.6660 2.4435 -7.0920 19 6 3.3586 3.0289 -8.4461 20 8 2.2334 2.9628 -8.8941 21 7 4.3337 3.6268 -9.1590 22 6 4.0539 4.1599 -10.3907 23 1 3.0520 4.1011 -10.7896 24 6 5.0593 4.7759 -11.1258 25 7 6.2783 4.8479 -10.6402 26 14 4.6782 5.5015 -12.8043 27 1 3.6399 6.5540 -12.6645 28 1 5.9119 6.0970 -13.3778 29 1 4.1799 4.4311 -13.7048 30 1 -0.3633 -1.0276 0.0028 31 1 -0.3633 0.5163 0.8886 32 1 -0.3633 0.5115 -0.8914 33 1 1.6438 -1.7377 1.2683 34 1 1.7193 -0.1869 2.1389 35 1 3.6302 -2.5074 0.1000 36 1 5.0926 -1.4938 0.1549 37 1 3.9401 -1.3529 -2.0564 38 1 3.9793 0.2215 -1.2255 39 1 1.5251 -2.5832 -3.7584 40 1 2.8410 -1.9758 -4.7918 41 1 3.0593 -2.0545 -3.0271 42 1 1.2218 -0.3969 -5.7106 43 1 0.6926 0.9631 -4.6913 44 1 3.0399 1.7425 -4.5128 45 1 3.5689 0.3826 -5.5321 46 1 1.8283 3.5641 -5.4703 47 1 1.2384 3.4580 -7.1461 48 1 0.5267 2.4228 -5.8848 49 1 4.0318 3.2291 -6.4309 50 1 4.4281 1.6710 -7.1947 51 1 5.2335 3.6800 -8.8005 52 1 6.9803 5.2775 -11.1535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320042573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:07 Heat of formation + Delta-G solvation = -106.459345 kcal Electronic energy + Delta-G solvation = -30631.031288 eV Core-core repulsion = 26438.026695 eV Total energy + Delta-G solvation = -4193.004593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01870 -39.12266 -38.52624 -36.80653 -35.57432 -34.70350 -33.83311 -32.68208 -31.23741 -30.02063 -27.74650 -27.54765 -26.95739 -26.20206 -25.03270 -23.80812 -22.79221 -21.44364 -20.65954 -19.34534 -19.08522 -17.83007 -17.54867 -16.72260 -16.58979 -16.25018 -15.90753 -15.74152 -15.22897 -15.01647 -14.78320 -14.59252 -14.49553 -14.30504 -13.90997 -13.86612 -13.45488 -13.37076 -13.00908 -12.88896 -12.80317 -12.64383 -12.51235 -12.08016 -12.07127 -11.86960 -11.85381 -11.49793 -11.34376 -11.28622 -11.20876 -11.03957 -10.89815 -10.83678 -10.74275 -10.43013 -10.25371 -10.20062 -9.64241 -9.45298 -8.93944 -8.40813 -7.96442 -7.84411 -6.40136 -3.80889 2.35232 2.69114 3.21096 3.26586 3.31087 3.44207 3.92280 4.00632 4.09162 4.18129 4.25452 4.32655 4.45065 4.62161 4.72880 4.76157 4.92446 4.95942 4.97192 5.04300 5.10208 5.14236 5.16485 5.22257 5.24179 5.28063 5.30124 5.36120 5.49456 5.50650 5.63503 5.68185 5.70201 5.76961 5.81966 5.90333 5.95538 5.98292 6.03313 6.07299 6.27674 6.31959 6.61504 6.75226 7.11874 7.27769 7.39437 7.56490 7.94602 8.07811 8.63668 9.19637 9.56121 10.08221 10.77605 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024212 B = 0.001877 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.186354 B =14911.275297 C =15303.707472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 H 0.089 0.911 4 C 0.066 3.934 5 O -0.381 6.381 6 C 0.063 3.937 7 C -0.155 4.155 8 C -0.104 4.104 9 H 0.095 0.905 10 C 0.519 3.481 11 O -0.529 6.529 12 N -0.615 5.615 13 C 0.065 3.935 14 C 0.117 3.883 15 C 0.043 3.957 16 N -0.516 5.516 17 C 0.021 3.979 18 C 0.047 3.953 19 C 0.445 3.555 20 O -0.577 6.577 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.015 0.985 47 H 0.096 0.904 48 H 0.061 0.939 49 H 0.047 0.953 50 H 0.087 0.913 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 -16.605 23.172 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 H 0.107 0.893 4 C -0.011 4.011 5 O -0.300 6.300 6 C -0.013 4.013 7 C -0.193 4.193 8 C -0.125 4.125 9 H 0.113 0.887 10 C 0.307 3.693 11 O -0.405 6.405 12 N -0.349 5.349 13 C -0.078 4.078 14 C -0.006 4.006 15 C -0.087 4.087 16 N -0.240 5.240 17 C -0.126 4.126 18 C -0.084 4.084 19 C 0.230 3.770 20 O -0.461 6.461 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.050 0.950 45 H 0.090 0.910 46 H 0.034 0.966 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.506 -16.216 22.613 28.366 hybrid contribution 0.784 0.713 -0.382 1.126 sum -4.722 -15.503 22.231 27.511 Atomic orbital electron populations 1.21846 0.93850 1.01580 1.03539 1.21598 0.97020 1.01022 0.92975 0.89283 1.22711 0.80785 0.99625 0.97982 1.87963 1.20479 1.76298 1.45249 1.22579 0.99479 0.94356 0.84933 1.22399 0.93710 1.03546 0.99609 1.21430 0.97053 1.00529 0.93515 0.88740 1.20528 0.78340 0.86126 0.84292 1.90694 1.41723 1.21838 1.86248 1.47843 1.65258 1.15705 1.06058 1.22106 0.99301 0.82513 1.03843 1.21501 0.97952 0.95479 0.85667 1.22424 0.97736 0.96905 0.91610 1.61524 1.10483 1.25464 1.26555 1.22574 0.94621 0.93646 1.01805 1.21852 0.92114 0.98617 0.95835 1.19717 0.86233 0.84076 0.86962 1.90481 1.21773 1.62255 1.71596 1.41862 1.10626 1.50349 1.17303 1.19647 0.97466 1.32545 0.93134 0.87963 1.25262 0.94830 0.97803 1.00115 1.69606 1.01176 1.44508 1.39118 0.85913 0.77520 0.79245 0.81505 1.19932 1.21011 1.19901 0.93168 0.92359 0.90520 0.93099 0.88477 0.92913 0.88359 0.89405 0.90169 0.92432 0.90259 0.90471 0.89442 0.89419 0.94961 0.91023 0.96636 0.88572 0.92039 0.93503 0.89517 0.77511 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.93 37.16 0.33 -0.90 16 2 C -0.11 -0.89 2.04 -90.47 -0.18 -1.08 16 3 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 4 C 0.07 0.46 6.13 37.21 0.23 0.69 16 5 O -0.38 -3.27 10.77 -35.23 -0.38 -3.65 16 6 C 0.06 0.38 6.84 37.20 0.25 0.63 16 7 C -0.16 -1.03 5.12 -26.59 -0.14 -1.17 16 8 C -0.10 -0.80 1.29 -91.59 -0.12 -0.92 16 9 H 0.09 0.56 7.75 -51.93 -0.40 0.16 16 10 C 0.52 5.68 6.55 -10.99 -0.07 5.60 16 11 O -0.53 -7.80 13.73 5.55 0.08 -7.72 16 12 N -0.61 -5.98 2.87 -181.57 -0.52 -6.50 16 13 C 0.07 0.39 9.91 59.85 0.59 0.98 16 14 C 0.12 1.40 5.35 -4.04 -0.02 1.38 16 15 C 0.04 0.58 5.28 -3.83 -0.02 0.56 16 16 N -0.52 -8.88 4.50 -244.38 -1.10 -9.98 16 17 C 0.02 0.37 8.96 60.06 0.54 0.91 16 18 C 0.05 0.87 5.45 -4.98 -0.03 0.84 16 19 C 0.44 10.63 7.47 -10.98 -0.08 10.55 16 20 O -0.58 -15.63 13.91 5.55 0.08 -15.55 16 21 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 22 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 23 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 26 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.83 6.08 -51.93 -0.32 0.51 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.44 5.33 -51.92 -0.28 0.16 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.45 8.03 -51.93 -0.42 0.03 16 41 H 0.08 0.33 4.20 -51.93 -0.22 0.11 16 42 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 43 H 0.09 1.22 5.76 -51.93 -0.30 0.92 16 44 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 45 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 46 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.10 1.99 5.82 -51.93 -0.30 1.69 16 48 H 0.06 0.97 6.47 -51.93 -0.34 0.64 16 49 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 50 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 51 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 52 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -33.67 403.68 -7.78 -41.45 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.70 Total: 8.13 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 1.04 Total: 10.05 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.96 Total: -54.96 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.23 Total: -26.92 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.67 -7.78 -41.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320042573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.008 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds