Wall clock time and date at job start Wed Apr 1 2020 01:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.57529 * 2 1 4 4 C 1.53105 * 109.59769 * 120.12228 * 2 1 3 5 5 O 1.42906 * 109.48510 * 177.42031 * 4 2 1 6 6 C 1.42907 * 114.09750 * 298.88655 * 5 4 2 7 7 C 1.53092 * 109.41203 * 61.15994 * 6 5 4 8 8 C 1.53178 * 109.51965 * 239.84475 * 2 1 3 9 9 H 1.08999 * 109.54640 * 303.07029 * 8 2 1 10 10 C 1.50698 * 109.54533 * 63.24792 * 8 2 1 11 11 O 1.21287 * 119.99727 * 7.17073 * 10 8 2 12 12 N 1.34772 * 120.00466 * 187.44583 * 10 8 2 13 13 C 1.46500 * 119.99690 * 5.84929 * 12 10 8 14 14 C 1.46507 * 120.00431 * 185.85088 * 12 10 8 15 15 C 1.52996 * 109.46881 * 90.00071 * 14 12 10 16 16 N 1.46900 * 109.46789 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00320 * 66.04147 * 16 15 14 18 18 C 1.46897 * 111.00050 * 189.99891 * 16 15 14 19 19 C 1.50695 * 109.47347 * 169.99654 * 18 16 15 20 20 O 1.21289 * 120.00065 * 0.02562 * 19 18 16 21 21 N 1.34784 * 120.00390 * 179.97438 * 19 18 16 22 22 C 1.37093 * 120.00411 * 180.02562 * 21 19 18 23 23 H 1.08007 * 119.99864 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00342 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99824 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00179 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47035 * 60.00233 * 26 24 22 28 28 H 1.48500 * 109.46974 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47297 * 300.00110 * 26 24 22 30 30 H 1.08993 * 109.47270 * 180.15396 * 1 2 3 31 31 H 1.08997 * 109.46989 * 300.15659 * 1 2 3 32 32 H 1.09006 * 109.47099 * 60.15152 * 1 2 3 33 33 H 1.08998 * 109.40372 * 57.44121 * 4 2 1 34 34 H 1.08994 * 109.49332 * 297.45000 * 4 2 1 35 35 H 1.09003 * 109.48244 * 301.18121 * 6 5 4 36 36 H 1.08998 * 109.47972 * 181.14128 * 6 5 4 37 37 H 1.09009 * 109.51921 * 182.48765 * 7 6 5 38 38 H 1.09002 * 109.57562 * 62.32939 * 7 6 5 39 39 H 1.09004 * 109.47138 * 84.33771 * 13 12 10 40 40 H 1.09001 * 109.47341 * 204.33626 * 13 12 10 41 41 H 1.08996 * 109.47750 * 324.33674 * 13 12 10 42 42 H 1.09005 * 109.46844 * 209.99712 * 14 12 10 43 43 H 1.08996 * 109.46828 * 329.99625 * 14 12 10 44 44 H 1.09001 * 109.47230 * 299.99974 * 15 14 12 45 45 H 1.08996 * 109.47753 * 60.00121 * 15 14 12 46 46 H 1.09003 * 109.46549 * 60.00125 * 17 16 15 47 47 H 1.08999 * 109.47182 * 179.97438 * 17 16 15 48 48 H 1.08994 * 109.47175 * 300.00085 * 17 16 15 49 49 H 1.08999 * 109.47019 * 290.00123 * 18 16 15 50 50 H 1.09005 * 109.47413 * 49.99875 * 18 16 15 51 51 H 0.97005 * 119.99416 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00199 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0435 -0.7238 1.2476 5 8 3.4713 -0.7751 1.2151 6 6 4.0044 -1.4836 0.0944 7 6 3.5715 -0.7891 -1.1994 8 6 2.0418 -0.7253 -1.2484 9 1 1.6354 -1.7363 -1.2751 10 6 1.6078 0.0253 -2.4810 11 8 1.0674 1.1058 -2.3741 12 7 1.8150 -0.5067 -3.7018 13 6 2.3440 -1.8670 -3.8278 14 6 1.5114 0.2754 -4.9029 15 6 2.7502 1.0703 -5.3204 16 7 2.4456 1.8549 -6.5244 17 6 1.4451 2.8917 -6.2380 18 6 3.6660 2.4435 -7.0920 19 6 3.3586 3.0289 -8.4461 20 8 2.2334 2.9628 -8.8941 21 7 4.3337 3.6268 -9.1590 22 6 4.0539 4.1599 -10.3907 23 1 3.0520 4.1011 -10.7896 24 6 5.0593 4.7759 -11.1258 25 7 6.2783 4.8479 -10.6402 26 14 4.6782 5.5015 -12.8043 27 1 3.6399 6.5540 -12.6645 28 1 5.9119 6.0970 -13.3778 29 1 4.1799 4.4311 -13.7048 30 1 -0.3633 -1.0276 0.0028 31 1 -0.3633 0.5163 0.8886 32 1 -0.3633 0.5115 -0.8914 33 1 1.6438 -1.7377 1.2683 34 1 1.7193 -0.1869 2.1389 35 1 3.6302 -2.5074 0.1000 36 1 5.0926 -1.4938 0.1549 37 1 3.9401 -1.3529 -2.0564 38 1 3.9793 0.2215 -1.2255 39 1 1.5251 -2.5832 -3.7584 40 1 2.8410 -1.9758 -4.7918 41 1 3.0593 -2.0545 -3.0271 42 1 1.2218 -0.3969 -5.7106 43 1 0.6926 0.9631 -4.6913 44 1 3.0399 1.7425 -4.5128 45 1 3.5689 0.3826 -5.5321 46 1 1.8283 3.5641 -5.4703 47 1 1.2384 3.4580 -7.1461 48 1 0.5267 2.4228 -5.8848 49 1 4.0318 3.2291 -6.4309 50 1 4.4281 1.6710 -7.1947 51 1 5.2335 3.6800 -8.8005 52 1 6.9803 5.2775 -11.1535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320042573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:06 Heat of formation + Delta-G solvation = -131.458729 kcal Electronic energy + Delta-G solvation = -30632.115343 eV Core-core repulsion = 26438.026695 eV Total energy + Delta-G solvation = -4194.088648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74573 -40.42741 -39.68806 -38.15068 -36.59792 -35.84548 -35.35709 -33.32834 -33.24853 -31.09496 -29.23009 -28.17912 -27.69215 -27.15152 -26.52811 -25.09378 -23.34677 -22.58591 -21.41622 -21.00896 -20.05586 -19.84710 -18.30853 -17.87992 -17.52562 -17.12343 -16.84891 -16.67307 -16.48212 -16.40101 -16.01436 -15.71946 -15.55045 -15.37616 -15.18000 -14.94852 -14.84179 -14.35574 -14.11982 -13.80077 -13.78570 -13.45656 -13.42810 -13.29396 -13.14132 -13.04250 -12.99172 -12.64855 -12.57105 -12.46054 -12.43732 -12.41449 -12.12679 -11.95716 -11.87444 -11.60070 -11.46117 -11.39103 -10.91768 -10.37549 -10.29611 -10.00911 -9.69127 -9.32092 -8.46469 -5.95191 1.39589 1.41320 1.52125 1.54309 1.89610 2.04169 2.29134 2.80950 2.97297 3.19824 3.37130 3.43019 3.59360 3.70516 3.88420 3.90287 4.05156 4.13895 4.21549 4.22557 4.28016 4.32024 4.43125 4.44808 4.47698 4.49229 4.55778 4.56402 4.59714 4.63666 4.66144 4.73842 4.78049 4.81413 4.89438 4.90640 4.96734 5.09756 5.13452 5.19940 5.30938 5.34250 5.40732 5.48225 5.81099 6.00577 6.11028 6.27503 6.37312 6.60264 7.12575 7.14426 7.55605 8.11448 8.70737 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024212 B = 0.001877 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.186354 B =14911.275297 C =15303.707472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.054 0.946 4 C 0.069 3.931 5 O -0.406 6.406 6 C 0.060 3.940 7 C -0.150 4.150 8 C -0.097 4.097 9 H 0.124 0.876 10 C 0.512 3.488 11 O -0.577 6.577 12 N -0.612 5.612 13 C 0.058 3.942 14 C 0.123 3.877 15 C 0.052 3.948 16 N -0.527 5.527 17 C 0.030 3.970 18 C 0.058 3.942 19 C 0.442 3.558 20 O -0.613 6.613 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.021 0.979 45 H 0.094 0.906 46 H 0.017 0.983 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.115 0.885 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.569 -19.211 23.950 30.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.073 0.927 4 C -0.007 4.007 5 O -0.325 6.325 6 C -0.016 4.016 7 C -0.187 4.187 8 C -0.118 4.118 9 H 0.142 0.858 10 C 0.301 3.699 11 O -0.456 6.456 12 N -0.344 5.344 13 C -0.083 4.083 14 C -0.001 4.001 15 C -0.077 4.077 16 N -0.252 5.252 17 C -0.118 4.118 18 C -0.073 4.073 19 C 0.229 3.771 20 O -0.499 6.499 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.112 0.888 46 H 0.036 0.964 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.133 0.867 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.502 -18.865 23.410 30.400 hybrid contribution 0.454 1.497 -0.583 1.669 sum -4.048 -17.368 22.827 28.967 Atomic orbital electron populations 1.21778 0.93838 1.02461 1.02272 1.21552 0.97016 0.99575 0.94421 0.92733 1.22738 0.80282 1.00640 0.97082 1.87937 1.21207 1.76989 1.46344 1.22768 1.00182 0.95115 0.83525 1.22388 0.92578 1.02593 1.01178 1.21461 0.97927 1.01155 0.91291 0.85830 1.21176 0.77513 0.85741 0.85424 1.90679 1.43907 1.24097 1.86965 1.47924 1.64782 1.16861 1.04873 1.22403 1.00409 0.80355 1.05167 1.21284 0.96421 0.95456 0.86919 1.22437 0.99194 0.96530 0.89542 1.61497 1.09893 1.25237 1.28569 1.22396 0.95667 0.93776 0.99942 1.21744 0.93267 0.99668 0.92599 1.20680 0.85260 0.82727 0.88408 1.90460 1.23224 1.63237 1.72958 1.41925 1.11174 1.50943 1.17082 1.19623 0.97030 1.34712 0.94809 0.90251 1.26052 0.94501 0.97493 1.03351 1.69669 1.01680 1.44498 1.40326 0.84979 0.77759 0.78407 0.77134 1.19845 1.19496 1.19582 0.91110 0.91843 0.93568 0.90779 0.88175 0.90369 0.87377 0.87234 0.92810 0.90756 0.89486 0.88380 0.88461 0.91895 0.96096 0.88751 0.96447 0.92058 0.90721 0.92210 0.86673 0.77051 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.93 71.98 0.64 -1.68 16 2 C -0.11 -1.72 2.04 -10.70 -0.02 -1.74 16 3 H 0.05 1.24 7.93 -2.39 -0.02 1.22 16 4 C 0.07 0.83 6.13 72.02 0.44 1.27 16 5 O -0.41 -6.22 10.77 -148.98 -1.60 -7.83 16 6 C 0.06 0.55 6.84 72.01 0.49 1.04 16 7 C -0.15 -1.65 5.12 30.68 0.16 -1.50 16 8 C -0.10 -1.33 1.29 -11.42 -0.01 -1.34 16 9 H 0.12 0.99 7.75 -2.39 -0.02 0.97 16 10 C 0.51 10.87 6.55 87.66 0.57 11.45 16 11 O -0.58 -17.73 13.73 -3.05 -0.04 -17.78 16 12 N -0.61 -10.83 2.87 -846.74 -2.43 -13.26 16 13 C 0.06 0.48 9.91 127.77 1.27 1.74 16 14 C 0.12 2.83 5.35 86.38 0.46 3.29 16 15 C 0.05 1.33 5.28 86.30 0.46 1.79 16 16 N -0.53 -17.89 4.50 -927.08 -4.17 -22.06 16 17 C 0.03 1.09 8.96 127.69 1.14 2.24 16 18 C 0.06 2.10 5.45 85.56 0.47 2.57 16 19 C 0.44 21.45 7.47 87.65 0.66 22.11 16 20 O -0.61 -34.22 13.91 -3.06 -0.04 -34.27 16 21 N -0.57 -29.88 5.29 -306.98 -1.62 -31.50 16 22 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 26 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 1.04 6.08 -2.38 -0.01 1.02 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.69 5.33 -2.38 -0.01 0.68 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.09 0.64 8.03 -2.39 -0.02 0.62 16 41 H 0.10 0.40 4.20 -2.39 -0.01 0.39 16 42 H 0.10 2.05 8.07 -2.38 -0.02 2.03 16 43 H 0.06 1.78 5.76 -2.39 -0.01 1.77 16 44 H 0.02 0.60 8.12 -2.39 -0.02 0.58 16 45 H 0.09 2.02 7.93 -2.39 -0.02 2.00 16 46 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 2.65 5.82 -2.39 -0.01 2.63 16 48 H 0.07 2.44 6.47 -2.39 -0.02 2.43 16 49 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 50 H 0.12 3.52 7.93 -2.38 -0.02 3.50 16 51 H 0.40 19.57 7.90 -92.70 -0.73 18.84 16 52 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -76.31 403.68 0.59 -75.72 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.19 Total: 32.72 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 8.00 Total: 22.72 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -7.94 Total: -116.61 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -1.69 Total: -59.87 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -76.31 0.59 -75.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320042573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.740 kcal (2) G-P(sol) polarization free energy of solvation -76.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds