Wall clock time and date at job start Wed Apr 1 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47593 * 2 1 4 4 C 1.53000 * 109.46799 * 120.00381 * 2 1 3 5 5 O 1.42898 * 109.47362 * 294.99402 * 4 2 1 6 6 C 1.53006 * 109.46805 * 239.99913 * 2 1 3 7 7 C 1.53002 * 109.46828 * 65.00438 * 6 2 1 8 8 C 1.52999 * 109.46614 * 179.97438 * 7 6 2 9 9 N 1.46505 * 109.46971 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00282 * 179.97438 * 9 8 7 11 11 O 1.21356 * 119.99625 * 0.02562 * 10 9 8 12 12 C 1.49446 * 119.99980 * 180.02562 * 10 9 8 13 13 O 1.21342 * 120.00383 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99649 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99761 * 180.02562 * 14 12 10 16 16 C 1.53040 * 109.46044 * 275.02529 * 15 14 12 17 17 C 1.53195 * 109.31047 * 178.60158 * 16 15 14 18 18 N 1.46923 * 108.76365 * 54.66018 * 17 16 15 19 19 C 1.36942 * 120.62817 * 126.40932 * 18 17 16 20 20 H 1.07995 * 119.99720 * 331.81547 * 19 18 17 21 21 C 1.38807 * 119.99986 * 151.82803 * 19 18 17 22 22 N 1.31622 * 120.00170 * 343.06022 * 21 19 18 23 23 Si 1.86799 * 120.00110 * 163.06497 * 21 19 18 24 24 H 1.48500 * 109.47308 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46997 * 119.99887 * 23 21 19 26 26 H 1.48501 * 109.46841 * 239.99530 * 23 21 19 27 27 C 1.46918 * 118.73813 * 306.37823 * 18 17 16 28 28 C 1.53043 * 109.45998 * 154.97284 * 15 14 12 29 29 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46832 * 59.99905 * 1 2 3 31 31 H 1.08998 * 109.47018 * 300.00211 * 1 2 3 32 32 H 1.08999 * 109.47188 * 54.99642 * 4 2 1 33 33 H 1.08998 * 109.46915 * 174.99732 * 4 2 1 34 34 H 0.96690 * 114.00512 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.46512 * 185.00051 * 6 2 1 36 36 H 1.09002 * 109.47075 * 305.00308 * 6 2 1 37 37 H 1.08995 * 109.46891 * 299.99502 * 7 6 2 38 38 H 1.08993 * 109.47227 * 60.00128 * 7 6 2 39 39 H 1.09004 * 109.47405 * 299.99440 * 8 7 6 40 40 H 1.09003 * 109.47792 * 60.00047 * 8 7 6 41 41 H 0.96993 * 119.99923 * 0.02562 * 9 8 7 42 42 H 0.97000 * 120.00286 * 0.02562 * 14 12 10 43 43 H 1.09002 * 109.46379 * 35.00156 * 15 14 12 44 44 H 1.08999 * 109.49867 * 298.56914 * 16 15 14 45 45 H 1.09002 * 109.49769 * 58.66396 * 16 15 14 46 46 H 1.09000 * 109.59983 * 294.86425 * 17 16 15 47 47 H 1.09002 * 109.69864 * 174.50721 * 17 16 15 48 48 H 0.96995 * 120.00321 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.59060 * 293.82230 * 27 18 17 50 50 H 1.09006 * 109.70596 * 173.47235 * 27 18 17 51 51 H 1.09000 * 109.49951 * 301.33775 * 28 15 14 52 52 H 1.09003 * 109.49735 * 61.39991 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 0.0166 2.4131 6 6 2.0400 -0.7213 -1.2493 7 6 1.6352 0.0690 -2.4953 8 6 2.1457 -0.6520 -3.7445 9 7 1.7577 0.1043 -4.9377 10 6 2.1020 -0.3439 -6.1613 11 8 2.7330 -1.3742 -6.2746 12 6 1.7066 0.4280 -7.3784 13 8 1.0760 1.4585 -7.2650 14 7 2.0505 -0.0205 -8.6019 15 6 1.6634 0.7364 -9.7950 16 6 0.2438 0.3431 -10.2100 17 6 -0.1705 1.1618 -11.4368 18 7 0.8381 0.9791 -12.4894 19 6 0.4709 0.5720 -13.7443 20 1 -0.4115 -0.0360 -13.8781 21 6 1.2331 0.9407 -14.8443 22 7 2.0940 1.9314 -14.7462 23 14 1.0368 0.0309 -16.4639 24 1 0.0127 -1.0338 -16.3127 25 1 0.6083 0.9844 -17.5186 26 1 2.3340 -0.5817 -16.8478 27 6 2.2478 1.2422 -12.1703 28 6 2.6350 0.4230 -10.9351 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -1.7199 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 1.9525 -0.3834 3.2440 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7198 -1.2952 37 1 0.5490 0.1472 -2.5390 38 1 2.0699 1.0674 -2.4494 39 1 3.2321 -0.7299 -3.7007 40 1 1.7114 -1.6507 -3.7907 41 1 1.2536 0.9280 -4.8471 42 1 2.5542 -0.8445 -8.6926 43 1 1.6948 1.8034 -9.5742 44 1 0.2174 -0.7186 -10.4550 45 1 -0.4443 0.5448 -9.3890 46 1 -0.2321 2.2165 -11.1687 47 1 -1.1406 0.8190 -11.7967 48 1 2.6264 2.1893 -15.5149 49 1 2.3836 2.3035 -11.9621 50 1 2.8757 0.9520 -13.0128 51 1 3.6491 0.6814 -10.6304 52 1 2.5862 -0.6397 -11.1729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322561272.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:10 Heat of formation + Delta-G solvation = -124.380834 kcal Electronic energy + Delta-G solvation = -29229.200605 eV Core-core repulsion = 25035.418878 eV Total energy + Delta-G solvation = -4193.781727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.67756 -38.93953 -38.36884 -37.32477 -36.50907 -35.01756 -34.32025 -32.14937 -31.28909 -30.20735 -29.50404 -27.27442 -26.65447 -25.31056 -23.81037 -22.33521 -22.17865 -21.64623 -20.64163 -20.17181 -19.51763 -18.31007 -17.85337 -16.89221 -16.75248 -16.49392 -15.92934 -15.65112 -15.48580 -15.21534 -14.81042 -14.74763 -14.26778 -14.06703 -13.70534 -13.66912 -13.54696 -13.28721 -13.01811 -12.83918 -12.62247 -12.57144 -12.42370 -12.10868 -11.87903 -11.71030 -11.49743 -11.33875 -11.15807 -11.15222 -10.98903 -10.87199 -10.75003 -10.51554 -10.49492 -10.31955 -10.07149 -9.85861 -9.70904 -9.49925 -9.44641 -8.87561 -8.48661 -6.71026 -5.81479 -3.23894 1.41762 2.32422 3.22829 3.36294 3.44618 3.46811 3.53442 3.72908 4.27661 4.30347 4.44356 4.48255 4.49188 4.58281 4.75730 4.86852 4.99466 5.03231 5.16198 5.21172 5.27855 5.30031 5.36689 5.36922 5.45405 5.51748 5.53612 5.60824 5.64871 5.79609 5.84058 5.91017 5.97806 6.02584 6.15628 6.25972 6.46354 6.48519 6.53526 6.70565 6.76756 6.90917 6.96049 7.09684 7.28520 7.39992 7.59920 7.72174 7.78705 8.06251 8.42560 9.18729 9.81716 10.38360 11.27543 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042379 B = 0.001470 C = 0.001456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.546915 B =19046.767692 C =19231.921038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.079 0.921 4 C 0.079 3.921 5 O -0.574 6.574 6 C -0.110 4.110 7 C -0.133 4.133 8 C 0.117 3.883 9 N -0.705 5.705 10 C 0.507 3.493 11 O -0.522 6.522 12 C 0.502 3.498 13 O -0.525 6.525 14 N -0.690 5.690 15 C 0.148 3.852 16 C -0.140 4.140 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.253 4.253 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.175 3.825 28 C -0.148 4.148 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.379 0.621 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.413 0.587 42 H 0.408 0.592 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.093 0.907 51 H 0.057 0.943 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 -5.851 30.597 31.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.097 0.903 4 C 0.001 3.999 5 O -0.379 6.379 6 C -0.148 4.148 7 C -0.171 4.171 8 C -0.006 4.006 9 N -0.359 5.359 10 C 0.288 3.712 11 O -0.398 6.398 12 C 0.282 3.718 13 O -0.401 6.401 14 N -0.341 5.341 15 C 0.045 3.955 16 C -0.180 4.180 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.188 4.188 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.226 0.774 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.111 0.889 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.207 -5.400 29.976 30.482 hybrid contribution 0.289 -0.867 -0.375 0.988 sum 1.496 -6.267 29.601 30.294 Atomic orbital electron populations 1.21838 0.94447 1.01889 1.02236 1.21127 0.96942 1.00470 0.92544 0.90284 1.22250 0.97935 0.94170 0.85554 1.86473 1.81619 1.53374 1.16448 1.21469 1.01362 0.99308 0.92706 1.21846 1.02341 0.99938 0.92994 1.21482 1.00676 0.95588 0.82880 1.45770 1.56769 1.28247 1.05082 1.20399 0.80288 0.85553 0.84962 1.90757 1.38562 1.23692 1.86747 1.20002 0.81255 0.85720 0.84812 1.90758 1.39084 1.23718 1.86562 1.46228 1.54894 1.27692 1.05252 1.21248 0.95605 0.96187 0.82426 1.22405 0.95089 1.01346 0.99203 1.20871 0.93154 0.95902 0.87985 1.44100 1.00914 1.78768 1.07734 1.19238 1.11184 1.25011 0.82809 0.91550 1.25051 1.00221 0.96672 0.97634 1.70029 1.27901 1.26750 1.30058 0.86228 0.77496 0.79334 0.83742 1.20240 1.21712 1.21556 1.20746 0.86337 0.94836 0.93262 1.22575 0.96956 1.02423 0.96828 0.92848 0.92303 0.92018 0.93608 0.93648 0.77432 0.91274 0.91198 0.90498 0.90786 0.90957 0.90942 0.75040 0.75622 0.89550 0.92028 0.92627 0.96076 0.92383 0.93624 0.95994 0.88885 0.92483 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.85 37.16 0.33 -0.51 16 2 C -0.09 -0.49 2.63 -90.61 -0.24 -0.72 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.08 0.38 6.43 37.16 0.24 0.62 16 5 O -0.57 -3.40 13.19 -35.23 -0.46 -3.87 16 6 C -0.11 -0.49 4.68 -26.73 -0.13 -0.61 16 7 C -0.13 -0.68 5.08 -26.73 -0.14 -0.82 16 8 C 0.12 0.86 5.67 -4.04 -0.02 0.84 16 9 N -0.70 -6.81 5.55 -60.72 -0.34 -7.15 16 10 C 0.51 6.55 7.89 -11.59 -0.09 6.45 16 11 O -0.52 -7.71 16.48 5.49 0.09 -7.62 16 12 C 0.50 7.40 7.85 -11.59 -0.09 7.31 16 13 O -0.52 -8.76 16.14 5.50 0.09 -8.67 16 14 N -0.69 -10.22 5.07 -54.20 -0.27 -10.49 16 15 C 0.15 2.55 2.42 -67.89 -0.16 2.38 16 16 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 17 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 18 N -0.59 -14.61 2.99 -172.33 -0.52 -15.12 16 19 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 20 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 21 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.84 11.19 55.49 0.62 -25.22 16 23 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.17 4.05 5.30 -3.72 -0.02 4.03 16 28 C -0.15 -2.70 5.55 -26.61 -0.15 -2.84 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 31 H 0.06 0.42 7.82 -51.93 -0.41 0.01 16 32 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.38 0.62 9.12 45.56 0.42 1.04 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.39 6.56 -51.93 -0.34 0.04 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.41 3.57 7.94 -40.82 -0.32 3.25 16 42 H 0.41 5.53 8.07 -40.82 -0.33 5.20 16 43 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.09 2.40 6.07 -51.93 -0.31 2.09 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 416.53 15.07 6.28 6.28 Total: -1.00 -32.64 416.53 -8.75 -41.39 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.34 Total: 4.52 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.87 Total: 9.54 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.51 Total: -57.98 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.29 Total: -20.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.64 -8.75 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322561272.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.991 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds