Wall clock time and date at job start Wed Apr 1 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47156 * 2 1 4 4 C 1.52999 * 109.46647 * 239.99847 * 2 1 3 5 5 O 1.42899 * 109.47381 * 65.00484 * 4 2 1 6 6 C 1.53002 * 109.46914 * 119.99981 * 2 1 3 7 7 C 1.52994 * 109.47003 * 294.99816 * 6 2 1 8 8 C 1.52995 * 109.47165 * 180.02562 * 7 6 2 9 9 N 1.46499 * 109.47402 * 179.97438 * 8 7 6 10 10 C 1.34784 * 119.99993 * 179.97438 * 9 8 7 11 11 O 1.21351 * 119.99902 * 0.02562 * 10 9 8 12 12 C 1.49454 * 119.99714 * 179.97438 * 10 9 8 13 13 O 1.21344 * 119.99843 * 0.02562 * 12 10 9 14 14 N 1.34776 * 119.99495 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99775 * 180.02562 * 14 12 10 16 16 C 1.53046 * 109.46108 * 275.03225 * 15 14 12 17 17 C 1.53189 * 109.31425 * 178.60067 * 16 15 14 18 18 N 1.46927 * 108.76559 * 54.65012 * 17 16 15 19 19 C 1.36943 * 120.62912 * 126.40394 * 18 17 16 20 20 H 1.08001 * 119.99887 * 331.83092 * 19 18 17 21 21 C 1.38812 * 119.99762 * 151.82990 * 19 18 17 22 22 N 1.31620 * 119.99899 * 343.06974 * 21 19 18 23 23 Si 1.86805 * 119.99743 * 163.07364 * 21 19 18 24 24 H 1.48495 * 109.47024 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46998 * 120.00113 * 23 21 19 26 26 H 1.48503 * 109.46612 * 240.00112 * 23 21 19 27 27 C 1.46927 * 118.74342 * 306.38710 * 18 17 16 28 28 C 1.53036 * 109.46089 * 154.97539 * 15 14 12 29 29 H 1.09003 * 109.46988 * 300.00655 * 1 2 3 30 30 H 1.08997 * 109.47142 * 59.99783 * 1 2 3 31 31 H 1.08994 * 109.47762 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46587 * 185.00018 * 4 2 1 33 33 H 1.08995 * 109.47441 * 304.99930 * 4 2 1 34 34 H 0.96704 * 114.00156 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.46995 * 55.00109 * 6 2 1 36 36 H 1.08997 * 109.46669 * 175.00028 * 6 2 1 37 37 H 1.08999 * 109.47484 * 299.99993 * 7 6 2 38 38 H 1.08996 * 109.47358 * 60.00019 * 7 6 2 39 39 H 1.09006 * 109.47348 * 300.00014 * 8 7 6 40 40 H 1.09007 * 109.47512 * 59.99951 * 8 7 6 41 41 H 0.96995 * 120.00295 * 359.97438 * 9 8 7 42 42 H 0.97001 * 120.00387 * 0.02562 * 14 12 10 43 43 H 1.09003 * 109.46170 * 34.99796 * 15 14 12 44 44 H 1.08997 * 109.49488 * 298.56609 * 16 15 14 45 45 H 1.08997 * 109.49916 * 58.65701 * 16 15 14 46 46 H 1.09004 * 109.59942 * 294.86693 * 17 16 15 47 47 H 1.08998 * 109.70411 * 174.50295 * 17 16 15 48 48 H 0.97005 * 119.99552 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.58538 * 293.82071 * 27 18 17 50 50 H 1.08996 * 109.70434 * 173.46038 * 27 18 17 51 51 H 1.08999 * 109.49941 * 301.33622 * 28 15 14 52 52 H 1.09004 * 109.49885 * 61.40620 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.6619 0.0167 -2.4131 6 6 2.0400 -0.7213 1.2493 7 6 1.6352 0.0689 2.4953 8 6 2.1457 -0.6519 3.7445 9 7 1.7587 0.1050 4.9376 10 6 2.1023 -0.3437 6.1612 11 8 2.7327 -1.3744 6.2745 12 6 1.7080 0.4289 7.3783 13 8 1.0780 1.4598 7.2648 14 7 2.0512 -0.0201 8.6018 15 6 1.6642 0.7368 9.7949 16 6 2.7018 1.8290 10.0647 17 6 2.2758 2.6406 11.2922 18 7 2.0629 1.7196 12.4170 19 6 2.7002 1.9195 13.6126 20 1 3.6556 2.4224 13.6378 21 6 2.1181 1.4757 14.7920 22 7 0.8377 1.1721 14.8204 23 14 3.1520 1.3094 16.3389 24 1 4.5513 1.7097 16.0444 25 1 2.5985 2.1874 17.4010 26 1 3.1281 -0.1017 16.8009 27 6 1.1531 0.5804 12.2351 28 6 1.5915 -0.2078 10.9968 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1262 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 1.9531 -0.3830 -3.2441 35 1 1.6053 -1.7198 1.2951 36 1 3.1262 -0.7995 1.2056 37 1 2.0698 1.0675 2.4494 38 1 0.5489 0.1472 2.5389 39 1 1.7114 -1.6507 3.7907 40 1 3.2321 -0.7299 3.7007 41 1 1.2551 0.9291 4.8470 42 1 2.5544 -0.8444 8.6925 43 1 0.6884 1.1950 9.6337 44 1 3.6728 1.3702 10.2508 45 1 2.7701 2.4878 9.1990 46 1 1.3495 3.1726 11.0752 47 1 3.0568 3.3563 11.5486 48 1 0.4310 0.8615 15.6445 49 1 0.1353 0.9444 12.0950 50 1 1.1927 -0.0654 13.1122 51 1 0.8694 -0.9989 10.7946 52 1 2.5731 -0.6476 11.1737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322561280.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:13 Heat of formation + Delta-G solvation = -124.383794 kcal Electronic energy + Delta-G solvation = -29226.058216 eV Core-core repulsion = 25032.276360 eV Total energy + Delta-G solvation = -4193.781856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.67744 -38.93955 -38.36899 -37.32416 -36.50909 -35.01751 -34.32018 -32.14934 -31.28917 -30.20742 -29.50375 -27.27497 -26.65406 -25.31016 -23.80987 -22.33540 -22.17831 -21.64603 -20.64156 -20.17201 -19.51726 -18.30984 -17.85282 -16.89395 -16.75302 -16.48458 -15.95412 -15.65668 -15.40704 -15.27096 -14.85104 -14.71650 -14.24794 -14.03155 -13.83141 -13.61198 -13.51307 -13.29618 -13.01730 -12.84466 -12.61569 -12.57653 -12.42371 -12.10842 -11.87934 -11.71011 -11.49801 -11.33891 -11.15769 -11.15264 -10.98850 -10.87233 -10.75000 -10.51549 -10.49485 -10.31945 -10.07149 -9.85830 -9.70903 -9.49873 -9.44664 -8.87576 -8.48659 -6.71036 -5.81491 -3.23875 1.41786 2.32419 3.22827 3.36306 3.44617 3.46830 3.53436 3.72903 4.27633 4.30366 4.44367 4.48262 4.49183 4.58247 4.75706 4.86887 4.99433 5.03237 5.16206 5.21152 5.27845 5.29960 5.36661 5.37010 5.45396 5.51716 5.53551 5.60766 5.64867 5.79609 5.84049 5.90972 5.97835 6.02570 6.15609 6.25963 6.46367 6.48516 6.53510 6.70561 6.76771 6.90922 6.96050 7.09606 7.28539 7.39998 7.59919 7.72174 7.78690 8.06246 8.42534 9.18718 9.81714 10.38365 11.27506 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042769 B = 0.001465 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.520935 B =19114.052364 C =19215.728475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.079 0.921 4 C 0.079 3.921 5 O -0.574 6.574 6 C -0.110 4.110 7 C -0.133 4.133 8 C 0.117 3.883 9 N -0.705 5.705 10 C 0.507 3.493 11 O -0.522 6.522 12 C 0.502 3.498 13 O -0.525 6.525 14 N -0.690 5.690 15 C 0.148 3.852 16 C -0.140 4.140 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.175 3.825 28 C -0.148 4.148 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.379 0.621 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.413 0.587 42 H 0.408 0.592 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.093 0.907 51 H 0.057 0.943 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 -5.803 -30.600 31.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.097 0.903 4 C 0.001 3.999 5 O -0.379 6.379 6 C -0.148 4.148 7 C -0.171 4.171 8 C -0.006 4.006 9 N -0.359 5.359 10 C 0.288 3.712 11 O -0.398 6.398 12 C 0.282 3.718 13 O -0.401 6.401 14 N -0.341 5.341 15 C 0.045 3.955 16 C -0.180 4.180 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.188 4.188 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.226 0.774 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.111 0.889 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.106 -5.463 -29.969 30.482 hybrid contribution 0.759 -0.583 0.346 1.018 sum 1.865 -6.046 -29.622 30.290 Atomic orbital electron populations 1.21836 0.94453 1.01885 1.02236 1.21126 0.96937 1.00475 0.92546 0.90282 1.22250 0.97938 0.94165 0.85554 1.86475 1.81577 1.53411 1.16453 1.21465 1.01368 0.99304 0.92704 1.21845 1.02334 0.99945 0.92994 1.21481 1.00690 0.95573 0.82883 1.45771 1.56821 1.28198 1.05084 1.20401 0.80294 0.85540 0.84965 1.90756 1.38572 1.23677 1.86748 1.20003 0.81203 0.85750 0.84830 1.90758 1.39239 1.23638 1.86490 1.46228 1.55047 1.27517 1.05274 1.21248 0.99111 0.92717 0.82386 1.22404 0.98592 0.97596 0.99452 1.20871 0.98158 0.91821 0.87062 1.44105 1.52725 1.25263 1.09433 1.19242 0.99650 1.35953 0.83400 0.91549 1.25053 0.95110 1.01901 0.97519 1.70033 1.09138 1.48864 1.26692 0.86227 0.79862 0.77455 0.83253 1.20241 1.21712 1.21558 1.20748 0.91479 0.89074 0.93876 1.22575 1.01780 0.98062 0.96367 0.92300 0.92026 0.92851 0.93644 0.93609 0.77430 0.91201 0.91271 0.90783 0.90502 0.90940 0.90962 0.75040 0.75620 0.89549 0.92028 0.92626 0.96076 0.92382 0.93630 0.95993 0.88883 0.92480 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.84 37.16 0.33 -0.50 16 2 C -0.09 -0.49 2.63 -90.62 -0.24 -0.72 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.08 0.38 6.43 37.16 0.24 0.62 16 5 O -0.57 -3.40 13.19 -35.23 -0.46 -3.87 16 6 C -0.11 -0.49 4.68 -26.73 -0.13 -0.61 16 7 C -0.13 -0.68 5.08 -26.74 -0.14 -0.82 16 8 C 0.12 0.86 5.67 -4.04 -0.02 0.84 16 9 N -0.70 -6.82 5.55 -60.72 -0.34 -7.15 16 10 C 0.51 6.55 7.89 -11.58 -0.09 6.45 16 11 O -0.52 -7.71 16.48 5.50 0.09 -7.62 16 12 C 0.50 7.40 7.85 -11.58 -0.09 7.31 16 13 O -0.52 -8.76 16.14 5.50 0.09 -8.67 16 14 N -0.69 -10.22 5.07 -54.19 -0.27 -10.49 16 15 C 0.15 2.55 2.42 -67.89 -0.16 2.38 16 16 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 17 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 18 N -0.59 -14.61 2.99 -172.32 -0.52 -15.12 16 19 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 20 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.84 11.19 55.49 0.62 -25.21 16 23 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 28 C -0.15 -2.70 5.55 -26.61 -0.15 -2.84 16 29 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 30 H 0.06 0.42 7.82 -51.93 -0.41 0.01 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.38 0.62 9.12 45.56 0.42 1.04 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.38 6.56 -51.93 -0.34 0.04 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 41 H 0.41 3.57 7.94 -40.82 -0.32 3.25 16 42 H 0.41 5.53 8.07 -40.82 -0.33 5.20 16 43 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.09 2.40 6.07 -51.93 -0.31 2.09 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 416.53 15.07 6.28 6.28 Total: -1.00 -32.64 416.53 -8.75 -41.39 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.34 Total: 4.52 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.87 Total: 9.54 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.51 Total: -57.98 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.29 Total: -20.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.64 -8.75 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322561280.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.993 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds