Wall clock time and date at job start Wed Apr 1 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47156 * 2 1 4 4 C 1.52999 * 109.46647 * 239.99847 * 2 1 3 5 5 O 1.42899 * 109.47381 * 65.00484 * 4 2 1 6 6 C 1.53002 * 109.46914 * 119.99981 * 2 1 3 7 7 C 1.52994 * 109.47003 * 294.99816 * 6 2 1 8 8 C 1.52995 * 109.47165 * 180.02562 * 7 6 2 9 9 N 1.46499 * 109.47402 * 179.97438 * 8 7 6 10 10 C 1.34784 * 119.99993 * 179.97438 * 9 8 7 11 11 O 1.21351 * 119.99902 * 0.02562 * 10 9 8 12 12 C 1.49454 * 119.99714 * 179.97438 * 10 9 8 13 13 O 1.21344 * 119.99843 * 0.02562 * 12 10 9 14 14 N 1.34776 * 119.99495 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99775 * 180.02562 * 14 12 10 16 16 C 1.53046 * 109.46108 * 275.03225 * 15 14 12 17 17 C 1.53189 * 109.31425 * 178.60067 * 16 15 14 18 18 N 1.46927 * 108.76559 * 54.65012 * 17 16 15 19 19 C 1.36943 * 120.62912 * 126.40394 * 18 17 16 20 20 H 1.08001 * 119.99887 * 331.83092 * 19 18 17 21 21 C 1.38812 * 119.99762 * 151.82990 * 19 18 17 22 22 N 1.31620 * 119.99899 * 343.06974 * 21 19 18 23 23 Si 1.86805 * 119.99743 * 163.07364 * 21 19 18 24 24 H 1.48495 * 109.47024 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46998 * 120.00113 * 23 21 19 26 26 H 1.48503 * 109.46612 * 240.00112 * 23 21 19 27 27 C 1.46927 * 118.74342 * 306.38710 * 18 17 16 28 28 C 1.53036 * 109.46089 * 154.97539 * 15 14 12 29 29 H 1.09003 * 109.46988 * 300.00655 * 1 2 3 30 30 H 1.08997 * 109.47142 * 59.99783 * 1 2 3 31 31 H 1.08994 * 109.47762 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46587 * 185.00018 * 4 2 1 33 33 H 1.08995 * 109.47441 * 304.99930 * 4 2 1 34 34 H 0.96704 * 114.00156 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.46995 * 55.00109 * 6 2 1 36 36 H 1.08997 * 109.46669 * 175.00028 * 6 2 1 37 37 H 1.08999 * 109.47484 * 299.99993 * 7 6 2 38 38 H 1.08996 * 109.47358 * 60.00019 * 7 6 2 39 39 H 1.09006 * 109.47348 * 300.00014 * 8 7 6 40 40 H 1.09007 * 109.47512 * 59.99951 * 8 7 6 41 41 H 0.96995 * 120.00295 * 359.97438 * 9 8 7 42 42 H 0.97001 * 120.00387 * 0.02562 * 14 12 10 43 43 H 1.09003 * 109.46170 * 34.99796 * 15 14 12 44 44 H 1.08997 * 109.49488 * 298.56609 * 16 15 14 45 45 H 1.08997 * 109.49916 * 58.65701 * 16 15 14 46 46 H 1.09004 * 109.59942 * 294.86693 * 17 16 15 47 47 H 1.08998 * 109.70411 * 174.50295 * 17 16 15 48 48 H 0.97005 * 119.99552 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.58538 * 293.82071 * 27 18 17 50 50 H 1.08996 * 109.70434 * 173.46038 * 27 18 17 51 51 H 1.08999 * 109.49941 * 301.33622 * 28 15 14 52 52 H 1.09004 * 109.49885 * 61.40620 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.6619 0.0167 -2.4131 6 6 2.0400 -0.7213 1.2493 7 6 1.6352 0.0689 2.4953 8 6 2.1457 -0.6519 3.7445 9 7 1.7587 0.1050 4.9376 10 6 2.1023 -0.3437 6.1612 11 8 2.7327 -1.3744 6.2745 12 6 1.7080 0.4289 7.3783 13 8 1.0780 1.4598 7.2648 14 7 2.0512 -0.0201 8.6018 15 6 1.6642 0.7368 9.7949 16 6 2.7018 1.8290 10.0647 17 6 2.2758 2.6406 11.2922 18 7 2.0629 1.7196 12.4170 19 6 2.7002 1.9195 13.6126 20 1 3.6556 2.4224 13.6378 21 6 2.1181 1.4757 14.7920 22 7 0.8377 1.1721 14.8204 23 14 3.1520 1.3094 16.3389 24 1 4.5513 1.7097 16.0444 25 1 2.5985 2.1874 17.4010 26 1 3.1281 -0.1017 16.8009 27 6 1.1531 0.5804 12.2351 28 6 1.5915 -0.2078 10.9968 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1262 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 1.9531 -0.3830 -3.2441 35 1 1.6053 -1.7198 1.2951 36 1 3.1262 -0.7995 1.2056 37 1 2.0698 1.0675 2.4494 38 1 0.5489 0.1472 2.5389 39 1 1.7114 -1.6507 3.7907 40 1 3.2321 -0.7299 3.7007 41 1 1.2551 0.9291 4.8470 42 1 2.5544 -0.8444 8.6925 43 1 0.6884 1.1950 9.6337 44 1 3.6728 1.3702 10.2508 45 1 2.7701 2.4878 9.1990 46 1 1.3495 3.1726 11.0752 47 1 3.0568 3.3563 11.5486 48 1 0.4310 0.8615 15.6445 49 1 0.1353 0.9444 12.0950 50 1 1.1927 -0.0654 13.1122 51 1 0.8694 -0.9989 10.7946 52 1 2.5731 -0.6476 11.1737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322561280.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:12 Heat of formation + Delta-G solvation = -149.191659 kcal Electronic energy + Delta-G solvation = -29227.133966 eV Core-core repulsion = 25032.276360 eV Total energy + Delta-G solvation = -4194.857605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78963 -40.08244 -38.91279 -38.76487 -37.12577 -36.19094 -35.34266 -33.92129 -31.89462 -31.84432 -31.24329 -27.91509 -27.43267 -26.73172 -25.02181 -23.93553 -23.26972 -22.65706 -21.47689 -21.12709 -20.79360 -19.55706 -18.60084 -18.27095 -17.94219 -17.20759 -16.97372 -16.69153 -16.48793 -16.36703 -15.98437 -15.63016 -15.37057 -15.22740 -15.06946 -15.00009 -14.75056 -14.36705 -14.17697 -14.11913 -13.75334 -13.32345 -13.23273 -13.06388 -13.02322 -12.85072 -12.63308 -12.56594 -12.49828 -12.33172 -12.21990 -12.01477 -11.88215 -11.77411 -11.59553 -11.54191 -11.38800 -11.36944 -10.84468 -10.69626 -10.56788 -10.32402 -10.18223 -8.70801 -7.88045 -5.33394 0.32577 1.29705 1.47899 1.50192 1.60455 2.12536 2.52094 2.60535 3.27777 3.30378 3.42838 3.66357 3.83844 3.87621 3.90347 3.98817 4.04868 4.14946 4.28302 4.35769 4.43957 4.44278 4.61121 4.63381 4.64548 4.69439 4.73213 4.79841 4.82629 4.87266 4.93875 4.95799 5.02017 5.08770 5.12735 5.16955 5.20726 5.23616 5.28325 5.33600 5.46448 5.46591 5.49418 5.64985 5.70076 5.92820 6.34871 6.39497 6.72429 6.91809 6.93372 7.14751 7.84191 8.36442 9.19197 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042769 B = 0.001465 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.520935 B =19114.052364 C =19215.728475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.068 0.932 4 C 0.076 3.924 5 O -0.596 6.596 6 C -0.105 4.105 7 C -0.126 4.126 8 C 0.116 3.884 9 N -0.690 5.690 10 C 0.512 3.488 11 O -0.542 6.542 12 C 0.504 3.496 13 O -0.545 6.545 14 N -0.683 5.683 15 C 0.159 3.841 16 C -0.126 4.126 17 C 0.145 3.855 18 N -0.609 5.609 19 C -0.264 4.264 20 H 0.068 0.932 21 C -0.047 4.047 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.289 1.289 27 C 0.180 3.820 28 C -0.132 4.132 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.419 0.581 42 H 0.417 0.583 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.014 0.986 47 H 0.059 0.941 48 H 0.251 0.749 49 H 0.000 1.000 50 H 0.063 0.937 51 H 0.077 0.923 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -6.538 -32.277 33.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.002 4.002 5 O -0.405 6.405 6 C -0.143 4.143 7 C -0.163 4.163 8 C -0.007 4.007 9 N -0.343 5.343 10 C 0.292 3.708 11 O -0.420 6.420 12 C 0.284 3.716 13 O -0.423 6.423 14 N -0.335 5.335 15 C 0.056 3.944 16 C -0.166 4.166 17 C 0.019 3.981 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.243 4.243 22 N -0.580 5.580 23 Si 0.795 3.205 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.216 1.216 27 C 0.053 3.947 28 C -0.172 4.172 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.245 0.755 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.257 0.743 42 H 0.254 0.746 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.032 0.968 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.018 0.982 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.271 -6.197 -31.718 32.397 hybrid contribution 0.359 -0.293 0.765 0.894 sum 2.630 -6.490 -30.953 31.735 Atomic orbital electron populations 1.21819 0.94900 1.01940 1.01623 1.21118 0.96541 1.00137 0.93324 0.91305 1.22312 0.98551 0.94264 0.85050 1.86431 1.82011 1.54356 1.17669 1.21413 1.01822 0.99277 0.91751 1.21793 1.02474 0.99921 0.92149 1.21656 1.00844 0.95618 0.82543 1.45817 1.55500 1.28204 1.04736 1.19988 0.80517 0.85139 0.85142 1.90757 1.39866 1.24424 1.86928 1.20341 0.80461 0.85489 0.85262 1.90754 1.40078 1.24618 1.86837 1.45980 1.55192 1.27623 1.04698 1.20888 0.98263 0.92343 0.82946 1.22210 0.98730 0.97564 0.98110 1.20971 0.97911 0.91913 0.87318 1.44350 1.52716 1.26490 1.09725 1.19555 0.99809 1.35473 0.84546 0.91477 1.25779 0.96044 1.02154 1.00306 1.70180 1.10622 1.50068 1.27168 0.85224 0.78772 0.77016 0.79514 1.19130 1.22063 1.21555 1.20550 0.90447 0.88726 0.94934 1.22304 1.02452 0.97926 0.94478 0.92057 0.93480 0.92441 0.92715 0.92798 0.75539 0.90585 0.90576 0.90469 0.90180 0.90826 0.90875 0.74322 0.74565 0.90932 0.91638 0.91469 0.96841 0.92198 0.94021 0.98222 0.91877 0.90397 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.84 71.98 0.64 -0.85 16 2 C -0.09 -0.84 2.63 -10.79 -0.03 -0.87 16 3 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 4 C 0.08 0.62 6.43 71.98 0.46 1.08 16 5 O -0.60 -6.46 13.19 -148.98 -1.97 -8.43 16 6 C -0.10 -0.70 4.68 30.59 0.14 -0.56 16 7 C -0.13 -1.01 5.08 30.59 0.16 -0.85 16 8 C 0.12 1.44 5.67 86.38 0.49 1.93 16 9 N -0.69 -11.89 5.55 -464.39 -2.58 -14.47 16 10 C 0.51 12.22 7.89 87.27 0.69 12.91 16 11 O -0.54 -14.95 16.48 -3.25 -0.05 -15.01 16 12 C 0.50 13.96 7.85 87.27 0.69 14.64 16 13 O -0.55 -17.40 16.14 -3.23 -0.05 -17.45 16 14 N -0.68 -18.99 5.07 -443.74 -2.25 -21.24 16 15 C 0.16 5.29 2.42 45.02 0.11 5.40 16 16 C -0.13 -4.36 5.65 30.67 0.17 -4.19 16 17 C 0.14 6.09 6.52 86.36 0.56 6.65 16 18 N -0.61 -30.30 2.99 -699.09 -2.09 -32.39 16 19 C -0.26 -14.37 9.58 84.03 0.81 -13.56 16 20 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 21 C -0.05 -2.61 4.92 84.86 0.42 -2.19 16 22 N -0.93 -54.65 11.19 21.65 0.24 -54.41 16 23 Si 0.97 44.39 29.59 68.60 2.03 46.41 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 27 C 0.18 8.46 5.30 86.36 0.46 8.92 16 28 C -0.13 -4.69 5.55 30.67 0.17 -4.52 16 29 H 0.06 0.57 6.57 -2.39 -0.02 0.56 16 30 H 0.05 0.62 7.82 -2.39 -0.02 0.60 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.40 0.87 9.12 -74.05 -0.68 0.20 16 35 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.62 6.56 -2.39 -0.02 0.61 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.42 6.37 7.94 -92.71 -0.74 5.64 16 42 H 0.42 10.39 8.07 -92.71 -0.75 9.64 16 43 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 48 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 49 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 51 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 52 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -69.81 416.53 -2.02 -71.82 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -1.23 Total: 21.21 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 5.93 Total: 23.93 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -6.68 Total: -122.50 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -2.07 Total: -40.88 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.81 -2.02 -71.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322561280.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.367 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds