Wall clock time and date at job start Wed Apr 1 2020 00:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47901 * 2 1 4 4 C 1.53093 * 109.47989 * 239.96597 * 2 1 3 5 5 C 1.53177 * 109.16111 * 182.40752 * 4 2 1 6 6 H 1.08999 * 109.61331 * 297.06793 * 5 4 2 7 7 C 1.50704 * 109.54125 * 176.84494 * 5 4 2 8 8 O 1.21279 * 120.00100 * 346.35300 * 7 5 4 9 9 N 1.34777 * 119.99927 * 166.35072 * 7 5 4 10 10 C 1.46499 * 119.99794 * 4.58963 * 9 7 5 11 11 C 1.46494 * 120.00130 * 184.58854 * 9 7 5 12 12 C 1.53007 * 109.46890 * 270.00114 * 11 9 7 13 13 C 1.53000 * 109.46902 * 180.02562 * 12 11 9 14 14 N 1.46905 * 109.46916 * 180.02562 * 13 12 11 15 15 C 1.46898 * 110.99795 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47044 * 179.97438 * 15 14 13 17 17 O 1.21295 * 119.99967 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00095 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00436 * 179.72199 * 18 16 15 20 20 H 1.07998 * 119.99613 * 0.28036 * 19 18 16 21 21 C 1.38950 * 120.00537 * 180.27674 * 19 18 16 22 22 N 1.31410 * 120.00049 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99663 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47068 * 90.00345 * 23 21 19 25 25 H 1.48497 * 109.47206 * 209.99682 * 23 21 19 26 26 H 1.48496 * 109.47459 * 330.00122 * 23 21 19 27 27 C 1.53180 * 109.03628 * 56.97896 * 5 4 2 28 28 C 1.53089 * 109.16489 * 303.02068 * 27 5 4 29 29 O 1.42900 * 109.48047 * 120.02159 * 2 1 3 30 30 H 1.08997 * 109.47462 * 299.97622 * 1 2 3 31 31 H 1.09004 * 109.47736 * 59.97719 * 1 2 3 32 32 H 1.09007 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.52266 * 62.49941 * 4 2 1 34 34 H 1.09004 * 109.52269 * 302.31247 * 4 2 1 35 35 H 1.09005 * 109.47336 * 264.53904 * 10 9 7 36 36 H 1.08998 * 109.47501 * 24.53954 * 10 9 7 37 37 H 1.09000 * 109.47084 * 144.54234 * 10 9 7 38 38 H 1.09003 * 109.47221 * 150.00396 * 11 9 7 39 39 H 1.09000 * 109.47255 * 29.99922 * 11 9 7 40 40 H 1.08997 * 109.47243 * 59.99798 * 12 11 9 41 41 H 1.09000 * 109.47014 * 299.99956 * 12 11 9 42 42 H 1.08997 * 109.47430 * 59.99797 * 13 12 11 43 43 H 1.09000 * 109.47156 * 299.99754 * 13 12 11 44 44 H 1.00892 * 111.00181 * 56.04391 * 14 13 12 45 45 H 1.09001 * 109.47545 * 59.99490 * 15 14 13 46 46 H 1.09002 * 109.47416 * 299.99734 * 15 14 13 47 47 H 0.97001 * 120.00123 * 0.02562 * 18 16 15 48 48 H 0.96998 * 119.99956 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.52028 * 62.92643 * 27 5 4 50 50 H 1.09003 * 109.52083 * 183.05153 * 27 5 4 51 51 H 1.08995 * 109.48003 * 177.59309 * 28 27 5 52 52 H 1.09005 * 109.47668 * 297.62470 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5710 -0.7710 -1.2121 6 1 3.9701 0.2429 -1.2416 7 6 4.0799 -1.5479 -2.3989 8 8 3.3150 -2.2220 -3.0556 9 7 5.3851 -1.4935 -2.7306 10 6 6.3270 -0.7613 -1.8803 11 6 5.8619 -2.1665 -3.9413 12 6 6.2717 -3.6006 -3.5997 13 6 6.7703 -4.3033 -4.8641 14 7 7.1632 -5.6803 -4.5363 15 6 7.6477 -6.3876 -5.7291 16 6 8.0412 -7.7932 -5.3545 17 8 7.9294 -8.1688 -4.2066 18 7 8.5172 -8.6331 -6.2949 19 6 8.8806 -9.9101 -5.9530 20 1 8.7810 -10.2445 -4.9310 21 6 9.3768 -10.7742 -6.9215 22 7 9.7245 -11.9984 -6.5938 23 14 9.5495 -10.1956 -8.6891 24 1 10.8957 -9.6002 -8.8858 25 1 9.3805 -11.3508 -9.6069 26 1 8.5100 -9.1759 -8.9801 27 6 4.0176 -1.4600 0.0811 28 6 3.4307 -0.7092 1.2792 29 8 2.0065 -0.6740 1.1665 30 1 -0.3634 0.5134 0.8902 31 1 -0.3635 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7148 -0.1846 -2.1398 34 1 1.6442 -1.7376 -1.2708 35 1 6.4608 0.2475 -2.2711 36 1 5.9345 -0.7085 -0.8649 37 1 7.2867 -1.2780 -1.8725 38 1 6.7213 -1.6286 -4.3415 39 1 5.0653 -2.1837 -4.6851 40 1 5.4124 -4.1385 -3.1995 41 1 7.0683 -3.5834 -2.8559 42 1 7.6297 -3.7652 -5.2640 43 1 5.9740 -4.3204 -5.6082 44 1 6.4010 -6.1807 -4.1043 45 1 8.5134 -5.8643 -6.1353 46 1 6.8574 -6.4188 -6.4792 47 1 8.6070 -8.3327 -7.2128 48 1 10.0706 -12.6017 -7.2699 49 1 3.6613 -2.4901 0.0867 50 1 5.1059 -1.4506 0.1417 51 1 3.7099 -1.2200 2.2006 52 1 3.8192 0.3091 1.2957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322756374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:23 Heat of formation + Delta-G solvation = -118.392184 kcal Electronic energy + Delta-G solvation = -29456.854150 eV Core-core repulsion = 25263.332110 eV Total energy + Delta-G solvation = -4193.522040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95943 -39.21812 -38.47009 -36.68259 -35.56565 -34.29659 -33.88246 -33.24824 -31.81873 -31.53437 -28.46199 -27.89836 -26.89319 -25.74552 -24.37336 -23.27691 -22.80329 -21.62843 -20.93945 -19.42459 -19.32178 -18.30655 -17.55699 -16.80274 -16.77533 -16.26333 -15.95880 -15.85344 -15.71566 -15.11771 -14.94405 -14.71514 -14.45863 -14.27668 -14.03580 -13.81380 -13.52904 -13.16504 -13.13388 -13.02215 -12.93861 -12.77497 -12.67280 -12.36495 -12.25006 -11.99087 -11.88126 -11.78526 -11.71202 -11.57707 -11.42939 -11.20709 -11.15399 -10.90812 -10.81341 -10.58313 -10.26426 -9.96155 -9.75379 -9.55765 -9.03284 -8.57008 -8.17754 -8.11458 -6.29578 -3.80935 2.26654 2.59689 3.03814 3.07935 3.15946 3.30145 3.76194 3.96116 4.10641 4.12398 4.14790 4.24538 4.40208 4.54002 4.64349 4.67726 4.75097 4.82313 4.86788 4.93056 4.96104 4.98363 5.08276 5.10755 5.18616 5.20478 5.23590 5.25824 5.29032 5.31611 5.45373 5.49171 5.53990 5.61918 5.63992 5.65877 5.73900 5.83513 5.85850 5.93757 5.98586 6.06839 6.24905 6.78382 6.99374 7.12955 7.59060 7.60861 7.83638 8.16326 8.61684 8.96664 9.44161 9.84810 10.83620 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023583 B = 0.001558 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.031038 B =17972.677763 C =18204.937121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.087 3.913 3 H 0.058 0.942 4 C -0.131 4.131 5 C -0.108 4.108 6 H 0.094 0.906 7 C 0.518 3.482 8 O -0.531 6.531 9 N -0.616 5.616 10 C 0.064 3.936 11 C 0.117 3.883 12 C -0.131 4.131 13 C 0.063 3.937 14 N -0.670 5.670 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.564 6.564 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.155 4.155 28 C 0.065 3.935 29 O -0.378 6.378 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.028 0.972 44 H 0.351 0.649 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.099 0.901 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 32.237 9.658 35.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.076 0.924 4 C -0.169 4.169 5 C -0.129 4.129 6 H 0.112 0.888 7 C 0.306 3.694 8 O -0.407 6.407 9 N -0.349 5.349 10 C -0.079 4.079 11 C -0.006 4.006 12 C -0.170 4.170 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.085 4.085 16 C 0.236 3.764 17 O -0.446 6.446 18 N -0.231 5.231 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.192 4.192 28 C -0.012 4.012 29 O -0.298 6.298 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.170 0.830 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.105 0.895 51 H 0.117 0.883 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.024 31.493 10.359 35.266 hybrid contribution -0.115 0.224 -2.269 2.283 sum -12.139 31.716 8.090 34.910 Atomic orbital electron populations 1.21762 0.92738 1.03305 1.02465 1.22123 0.95428 0.94726 0.84795 0.92441 1.22091 0.92856 1.03502 0.98482 1.21379 0.97835 1.00020 0.93692 0.88823 1.20580 0.81655 0.81566 0.85619 1.90720 1.55698 1.40966 1.53338 1.47850 1.07690 1.53192 1.26145 1.22108 0.94021 0.96443 0.95281 1.21460 0.99973 0.92667 0.86475 1.21877 1.01727 0.94780 0.98629 1.21855 0.98740 0.90235 0.95906 1.60069 1.41828 1.01779 1.26547 1.21704 1.00223 0.94516 0.92042 1.19725 0.83976 0.86401 0.86327 1.90565 1.57511 1.77130 1.19418 1.42206 1.58895 1.12929 1.09034 1.19442 1.39255 0.85726 0.98970 0.86296 1.25036 0.97358 0.95357 0.98415 1.69623 1.42700 1.05368 1.34489 0.86661 0.78865 0.78950 0.84844 1.19612 1.20189 1.19536 1.22396 1.01811 1.01487 0.93546 1.22546 0.81189 0.99413 0.98012 1.87966 1.20780 1.78008 1.42997 0.91746 0.90964 0.91537 0.90438 0.89637 0.92472 0.90001 0.90586 0.90340 0.89975 0.91443 0.90808 0.91083 0.95383 0.82957 0.89496 0.93764 0.79689 0.91632 0.89973 0.89511 0.88261 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.56 37.16 0.36 -0.50 16 2 C 0.09 0.58 3.26 -26.68 -0.09 0.50 16 3 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 4 C -0.13 -1.02 4.16 -26.59 -0.11 -1.13 16 5 C -0.11 -0.76 1.78 -91.58 -0.16 -0.92 16 6 H 0.09 0.46 7.67 -51.93 -0.40 0.07 16 7 C 0.52 5.22 6.92 -10.98 -0.08 5.14 16 8 O -0.53 -7.55 15.56 5.56 0.09 -7.46 16 9 N -0.62 -5.08 2.87 -181.57 -0.52 -5.60 16 10 C 0.06 0.31 10.00 59.85 0.60 0.90 16 11 C 0.12 1.04 5.40 -4.04 -0.02 1.02 16 12 C -0.13 -1.43 5.80 -26.73 -0.15 -1.58 16 13 C 0.06 0.75 5.69 -3.82 -0.02 0.73 16 14 N -0.67 -10.87 6.13 -115.06 -0.70 -11.57 16 15 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 16 C 0.45 10.52 7.82 -10.99 -0.09 10.43 16 17 O -0.56 -15.60 15.78 5.54 0.09 -15.51 16 18 N -0.59 -14.39 5.09 -10.96 -0.06 -14.45 16 19 C -0.31 -8.79 10.16 -14.93 -0.15 -8.95 16 20 H 0.12 3.91 7.39 -52.49 -0.39 3.53 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -26.05 13.96 55.50 0.77 -25.27 16 23 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 27 C -0.15 -0.96 5.10 -26.59 -0.14 -1.10 16 28 C 0.07 0.37 6.84 37.20 0.25 0.62 16 29 O -0.38 -3.12 10.41 -35.23 -0.37 -3.49 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.29 3.98 -51.93 -0.21 0.08 16 37 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 38 H 0.08 0.53 8.07 -51.93 -0.42 0.12 16 39 H 0.08 0.84 7.49 -51.93 -0.39 0.46 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.35 6.06 8.43 -39.30 -0.33 5.73 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.40 5.47 -51.93 -0.28 0.11 16 51 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 413.08 15.07 6.23 6.23 Total: -1.00 -36.26 413.08 -8.11 -44.37 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -8.99 Total: 10.87 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 0.07 Total: 7.01 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.51 Total: -56.89 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.19 Total: -26.46 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.26 -8.11 -44.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322756374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.023 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds