Wall clock time and date at job start Wed Apr 1 2020 00:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47901 * 2 1 4 4 C 1.53093 * 109.47989 * 239.96597 * 2 1 3 5 5 C 1.53177 * 109.16111 * 182.40752 * 4 2 1 6 6 H 1.08999 * 109.61331 * 297.06793 * 5 4 2 7 7 C 1.50704 * 109.54125 * 176.84494 * 5 4 2 8 8 O 1.21279 * 120.00100 * 346.35300 * 7 5 4 9 9 N 1.34777 * 119.99927 * 166.35072 * 7 5 4 10 10 C 1.46499 * 119.99794 * 4.58963 * 9 7 5 11 11 C 1.46494 * 120.00130 * 184.58854 * 9 7 5 12 12 C 1.53007 * 109.46890 * 270.00114 * 11 9 7 13 13 C 1.53000 * 109.46902 * 180.02562 * 12 11 9 14 14 N 1.46905 * 109.46916 * 180.02562 * 13 12 11 15 15 C 1.46898 * 110.99795 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47044 * 179.97438 * 15 14 13 17 17 O 1.21295 * 119.99967 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00095 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00436 * 179.72199 * 18 16 15 20 20 H 1.07998 * 119.99613 * 0.28036 * 19 18 16 21 21 C 1.38950 * 120.00537 * 180.27674 * 19 18 16 22 22 N 1.31410 * 120.00049 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99663 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47068 * 90.00345 * 23 21 19 25 25 H 1.48497 * 109.47206 * 209.99682 * 23 21 19 26 26 H 1.48496 * 109.47459 * 330.00122 * 23 21 19 27 27 C 1.53180 * 109.03628 * 56.97896 * 5 4 2 28 28 C 1.53089 * 109.16489 * 303.02068 * 27 5 4 29 29 O 1.42900 * 109.48047 * 120.02159 * 2 1 3 30 30 H 1.08997 * 109.47462 * 299.97622 * 1 2 3 31 31 H 1.09004 * 109.47736 * 59.97719 * 1 2 3 32 32 H 1.09007 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.52266 * 62.49941 * 4 2 1 34 34 H 1.09004 * 109.52269 * 302.31247 * 4 2 1 35 35 H 1.09005 * 109.47336 * 264.53904 * 10 9 7 36 36 H 1.08998 * 109.47501 * 24.53954 * 10 9 7 37 37 H 1.09000 * 109.47084 * 144.54234 * 10 9 7 38 38 H 1.09003 * 109.47221 * 150.00396 * 11 9 7 39 39 H 1.09000 * 109.47255 * 29.99922 * 11 9 7 40 40 H 1.08997 * 109.47243 * 59.99798 * 12 11 9 41 41 H 1.09000 * 109.47014 * 299.99956 * 12 11 9 42 42 H 1.08997 * 109.47430 * 59.99797 * 13 12 11 43 43 H 1.09000 * 109.47156 * 299.99754 * 13 12 11 44 44 H 1.00892 * 111.00181 * 56.04391 * 14 13 12 45 45 H 1.09001 * 109.47545 * 59.99490 * 15 14 13 46 46 H 1.09002 * 109.47416 * 299.99734 * 15 14 13 47 47 H 0.97001 * 120.00123 * 0.02562 * 18 16 15 48 48 H 0.96998 * 119.99956 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.52028 * 62.92643 * 27 5 4 50 50 H 1.09003 * 109.52083 * 183.05153 * 27 5 4 51 51 H 1.08995 * 109.48003 * 177.59309 * 28 27 5 52 52 H 1.09005 * 109.47668 * 297.62470 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5710 -0.7710 -1.2121 6 1 3.9701 0.2429 -1.2416 7 6 4.0799 -1.5479 -2.3989 8 8 3.3150 -2.2220 -3.0556 9 7 5.3851 -1.4935 -2.7306 10 6 6.3270 -0.7613 -1.8803 11 6 5.8619 -2.1665 -3.9413 12 6 6.2717 -3.6006 -3.5997 13 6 6.7703 -4.3033 -4.8641 14 7 7.1632 -5.6803 -4.5363 15 6 7.6477 -6.3876 -5.7291 16 6 8.0412 -7.7932 -5.3545 17 8 7.9294 -8.1688 -4.2066 18 7 8.5172 -8.6331 -6.2949 19 6 8.8806 -9.9101 -5.9530 20 1 8.7810 -10.2445 -4.9310 21 6 9.3768 -10.7742 -6.9215 22 7 9.7245 -11.9984 -6.5938 23 14 9.5495 -10.1956 -8.6891 24 1 10.8957 -9.6002 -8.8858 25 1 9.3805 -11.3508 -9.6069 26 1 8.5100 -9.1759 -8.9801 27 6 4.0176 -1.4600 0.0811 28 6 3.4307 -0.7092 1.2792 29 8 2.0065 -0.6740 1.1665 30 1 -0.3634 0.5134 0.8902 31 1 -0.3635 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7148 -0.1846 -2.1398 34 1 1.6442 -1.7376 -1.2708 35 1 6.4608 0.2475 -2.2711 36 1 5.9345 -0.7085 -0.8649 37 1 7.2867 -1.2780 -1.8725 38 1 6.7213 -1.6286 -4.3415 39 1 5.0653 -2.1837 -4.6851 40 1 5.4124 -4.1385 -3.1995 41 1 7.0683 -3.5834 -2.8559 42 1 7.6297 -3.7652 -5.2640 43 1 5.9740 -4.3204 -5.6082 44 1 6.4010 -6.1807 -4.1043 45 1 8.5134 -5.8643 -6.1353 46 1 6.8574 -6.4188 -6.4792 47 1 8.6070 -8.3327 -7.2128 48 1 10.0706 -12.6017 -7.2699 49 1 3.6613 -2.4901 0.0867 50 1 5.1059 -1.4506 0.1417 51 1 3.7099 -1.2200 2.2006 52 1 3.8192 0.3091 1.2957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322756374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:17 Heat of formation + Delta-G solvation = -147.171265 kcal Electronic energy + Delta-G solvation = -29458.102105 eV Core-core repulsion = 25263.332110 eV Total energy + Delta-G solvation = -4194.769995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -41.61425 -40.33910 -39.81219 -37.68984 -36.57668 -35.93275 -34.90711 -33.80133 -33.74341 -32.65175 -29.11108 -28.91923 -27.62128 -26.87604 -25.60674 -24.30393 -23.45769 -22.54635 -21.50269 -21.30059 -20.28727 -20.03904 -18.24994 -17.84496 -17.34164 -17.31683 -17.17753 -16.75450 -16.68126 -16.44906 -15.82626 -15.69533 -15.58768 -15.31822 -15.06274 -14.88110 -14.59213 -14.43516 -14.30885 -14.11497 -13.73528 -13.56305 -13.42035 -13.39828 -13.18381 -13.05842 -12.97312 -12.80757 -12.46742 -12.43173 -12.40202 -12.36982 -12.08565 -11.98927 -11.73259 -11.70588 -11.53302 -11.46113 -10.90880 -10.48768 -10.36351 -10.27172 -9.70014 -9.38760 -8.43081 -6.04555 1.29483 1.34879 1.44012 1.52811 1.92477 1.97135 2.21974 2.71515 2.84406 3.12829 3.36396 3.41761 3.59337 3.71373 3.90057 3.94020 4.08052 4.10956 4.15286 4.18719 4.23077 4.32852 4.37890 4.42251 4.43530 4.49003 4.52023 4.52435 4.64422 4.68580 4.70719 4.72516 4.78290 4.81493 4.88276 4.97148 5.04452 5.08885 5.14594 5.21439 5.24230 5.31112 5.50757 5.54724 5.88116 6.02777 6.28328 6.31603 6.34872 6.57617 6.85489 7.11982 7.36963 7.93632 8.74627 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023583 B = 0.001558 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.031038 B =17972.677763 C =18204.937121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 H 0.081 0.919 4 C -0.129 4.129 5 C -0.102 4.102 6 H 0.127 0.873 7 C 0.509 3.491 8 O -0.585 6.585 9 N -0.614 5.614 10 C 0.057 3.943 11 C 0.120 3.880 12 C -0.121 4.121 13 C 0.066 3.934 14 N -0.689 5.689 15 C 0.062 3.938 16 C 0.446 3.554 17 O -0.617 6.617 18 N -0.589 5.589 19 C -0.333 4.333 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.232 1.232 27 C -0.150 4.150 28 C 0.062 3.938 29 O -0.403 6.403 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.035 0.965 44 H 0.339 0.661 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.391 0.609 48 H 0.280 0.720 49 H 0.050 0.950 50 H 0.108 0.892 51 H 0.107 0.893 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 36.530 7.664 38.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.099 0.901 4 C -0.167 4.167 5 C -0.123 4.123 6 H 0.145 0.855 7 C 0.299 3.701 8 O -0.465 6.465 9 N -0.345 5.345 10 C -0.084 4.084 11 C -0.003 4.003 12 C -0.160 4.160 13 C -0.063 4.063 14 N -0.321 5.321 15 C -0.070 4.070 16 C 0.234 3.766 17 O -0.501 6.501 18 N -0.231 5.231 19 C -0.462 4.462 20 H 0.072 0.928 21 C -0.213 4.213 22 N -0.574 5.574 23 Si 0.787 3.213 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.155 1.155 27 C -0.188 4.188 28 C -0.014 4.014 29 O -0.323 6.323 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.053 0.947 44 H 0.157 0.843 45 H 0.138 0.862 46 H 0.092 0.908 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.126 0.874 51 H 0.125 0.875 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.918 35.841 8.377 38.392 hybrid contribution -0.443 -1.158 -1.502 1.947 sum -11.360 34.683 6.875 37.138 Atomic orbital electron populations 1.21798 0.92627 1.02535 1.03432 1.22204 0.95678 0.95393 0.83654 0.90093 1.22039 0.93678 1.01662 0.99345 1.21409 0.97142 1.01183 0.92547 0.85537 1.21178 0.81966 0.81126 0.85878 1.90693 1.57223 1.43322 1.55254 1.47986 1.07707 1.52636 1.26179 1.22382 0.93384 0.97180 0.95473 1.21416 1.00488 0.91792 0.86602 1.21764 1.00248 0.95783 0.98191 1.21946 0.99928 0.87949 0.96438 1.60117 1.41940 1.03438 1.26593 1.21648 1.02372 0.90116 0.92898 1.21019 0.81712 0.88545 0.85315 1.90542 1.59008 1.78723 1.21854 1.42017 1.59273 1.11471 1.10320 1.19021 1.41793 0.88481 0.96876 0.92832 1.26143 0.95688 0.94880 1.04615 1.69806 1.43366 1.07227 1.37004 0.85334 0.80519 0.79405 0.76057 1.17905 1.19955 1.15546 1.22376 1.03038 0.99744 0.93606 1.22727 0.80005 1.00894 0.97778 1.87941 1.22390 1.78510 1.43481 0.91128 0.89610 0.93210 0.90381 0.93127 0.90167 0.88716 0.89947 0.87177 0.91601 0.94608 0.90919 0.88638 0.94674 0.84325 0.86209 0.90822 0.77374 0.91078 0.93150 0.87420 0.87534 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.56 71.98 0.69 -1.01 16 2 C 0.09 1.10 3.26 30.62 0.10 1.20 16 3 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 4 C -0.13 -2.03 4.16 30.68 0.13 -1.91 16 5 C -0.10 -1.31 1.78 -11.42 -0.02 -1.33 16 6 H 0.13 0.81 7.67 -2.39 -0.02 0.79 16 7 C 0.51 10.15 6.92 87.66 0.61 10.76 16 8 O -0.58 -17.53 15.56 -3.03 -0.05 -17.58 16 9 N -0.61 -9.07 2.87 -846.75 -2.43 -11.51 16 10 C 0.06 0.35 10.00 127.77 1.28 1.63 16 11 C 0.12 1.93 5.40 86.38 0.47 2.40 16 12 C -0.12 -2.53 5.80 30.60 0.18 -2.35 16 13 C 0.07 1.44 5.69 86.30 0.49 1.93 16 14 N -0.69 -21.53 6.13 -517.93 -3.17 -24.70 16 15 C 0.06 1.96 6.17 85.56 0.53 2.49 16 16 C 0.45 20.86 7.82 87.66 0.69 21.54 16 17 O -0.62 -35.54 15.78 -3.07 -0.05 -35.59 16 18 N -0.59 -28.45 5.09 -306.99 -1.56 -30.01 16 19 C -0.33 -19.91 10.16 84.04 0.85 -19.06 16 20 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 21 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.93 -56.95 13.96 21.66 0.30 -56.64 16 23 Si 0.97 39.12 27.74 68.60 1.90 41.02 16 24 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 27 C -0.15 -1.73 5.10 30.68 0.16 -1.57 16 28 C 0.06 0.59 6.84 72.01 0.49 1.08 16 29 O -0.40 -6.36 10.41 -148.98 -1.55 -7.91 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.14 7.85 -2.39 -0.02 1.12 16 35 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 36 H 0.09 0.32 3.98 -2.39 -0.01 0.31 16 37 H 0.08 0.45 8.11 -2.39 -0.02 0.43 16 38 H 0.11 1.09 8.07 -2.39 -0.02 1.07 16 39 H 0.07 1.30 7.49 -2.39 -0.02 1.28 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.34 11.90 8.43 -89.70 -0.76 11.14 16 45 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.39 15.49 5.76 -92.71 -0.53 14.96 16 48 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 49 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.11 0.74 5.47 -2.39 -0.01 0.73 16 51 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 Total: -1.00 -87.79 413.08 0.06 -87.72 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: -0.43 Total: 39.74 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 7.10 Total: 15.44 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -6.87 Total: -122.86 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -1.65 Total: -61.07 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.02 kcal Total: -87.79 0.06 -87.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322756374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.446 kcal (2) G-P(sol) polarization free energy of solvation -87.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds