Wall clock time and date at job start Wed Apr 1 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47765 * 2 1 4 4 C 1.53096 * 109.48095 * 239.97602 * 2 1 3 5 5 C 1.53176 * 109.16129 * 182.39686 * 4 2 1 6 6 H 1.08994 * 109.54213 * 176.84613 * 5 4 2 7 7 C 1.50703 * 109.54479 * 297.11403 * 5 4 2 8 8 O 1.21286 * 119.99912 * 10.55697 * 7 5 4 9 9 N 1.34767 * 120.00057 * 190.55793 * 7 5 4 10 10 C 1.46496 * 120.00370 * 3.72013 * 9 7 5 11 11 C 1.46505 * 120.00024 * 183.71635 * 9 7 5 12 12 C 1.53000 * 109.46778 * 90.00261 * 11 9 7 13 13 C 1.53001 * 109.47122 * 180.02562 * 12 11 9 14 14 N 1.46896 * 109.47266 * 180.02562 * 13 12 11 15 15 C 1.46898 * 111.00253 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47428 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99757 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00092 * 180.02562 * 16 15 14 19 19 C 1.37088 * 119.99848 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00702 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99942 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99891 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47603 * 60.00013 * 23 21 19 25 25 H 1.48502 * 109.47042 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46929 * 299.99832 * 23 21 19 27 27 C 1.53179 * 109.03633 * 56.97799 * 5 4 2 28 28 C 1.53097 * 109.16534 * 303.01891 * 27 5 4 29 29 O 1.42901 * 109.48707 * 120.02560 * 2 1 3 30 30 H 1.09001 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47922 * 300.02619 * 1 2 3 32 32 H 1.09004 * 109.47481 * 60.02574 * 1 2 3 33 33 H 1.08993 * 109.51929 * 62.48921 * 4 2 1 34 34 H 1.08994 * 109.57303 * 302.33165 * 4 2 1 35 35 H 1.09007 * 109.47376 * 85.41085 * 10 9 7 36 36 H 1.08999 * 109.47370 * 205.41066 * 10 9 7 37 37 H 1.08999 * 109.47285 * 325.41451 * 10 9 7 38 38 H 1.08998 * 109.47547 * 209.99671 * 11 9 7 39 39 H 1.08997 * 109.47466 * 330.00432 * 11 9 7 40 40 H 1.09002 * 109.47316 * 299.99907 * 12 11 9 41 41 H 1.08994 * 109.47389 * 60.00174 * 12 11 9 42 42 H 1.09002 * 109.46681 * 299.99968 * 13 12 11 43 43 H 1.08997 * 109.47561 * 59.99901 * 13 12 11 44 44 H 1.00903 * 111.00750 * 56.04101 * 14 13 12 45 45 H 1.09001 * 109.47362 * 299.99935 * 15 14 13 46 46 H 1.09000 * 109.47395 * 59.99747 * 15 14 13 47 47 H 0.97002 * 119.99951 * 359.97438 * 18 16 15 48 48 H 0.97007 * 120.00020 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.52461 * 62.92499 * 27 5 4 50 50 H 1.08999 * 109.52377 * 183.11586 * 27 5 4 51 51 H 1.08995 * 109.47842 * 297.62748 * 28 27 5 52 52 H 1.08996 * 109.48745 * 177.59844 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7705 -1.2123 6 1 3.9392 -1.3322 -2.0708 7 6 4.1209 0.6321 -1.2520 8 8 3.3766 1.5794 -1.1120 9 7 5.4396 0.8338 -1.4429 10 6 6.3262 -0.3053 -1.6933 11 6 5.9867 2.1922 -1.4003 12 6 6.4033 2.5294 0.0328 13 6 6.9740 3.9482 0.0775 14 7 7.3745 4.2718 1.4533 15 6 7.9290 5.6297 1.5347 16 6 8.3272 5.9253 2.9578 17 8 8.1646 5.0875 3.8195 18 7 8.8630 7.1211 3.2731 19 6 9.2257 7.3898 4.5675 20 1 9.0824 6.6432 5.3347 21 6 9.7786 8.6225 4.8926 22 7 9.9543 9.5304 3.9590 23 14 10.2734 8.9883 6.6563 24 1 11.2985 8.0082 7.0964 25 1 10.8343 10.3609 6.7385 26 1 9.0814 8.8867 7.5360 27 6 4.0178 -1.4596 0.0807 28 6 3.4309 -0.7089 1.2790 29 8 2.0067 -0.6741 1.1664 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8902 33 1 1.7146 -0.1843 -2.1398 34 1 1.6445 -1.7374 -1.2721 35 1 6.3214 -0.5426 -2.7572 36 1 7.3397 -0.0521 -1.3822 37 1 5.9772 -1.1687 -1.1269 38 1 6.8556 2.2548 -2.0554 39 1 5.2281 2.9001 -1.7342 40 1 5.5344 2.4668 0.6880 41 1 7.1619 1.8216 0.3667 42 1 7.8427 4.0112 -0.5778 43 1 6.2151 4.6559 -0.2563 44 1 8.0301 3.5920 1.8085 45 1 8.8042 5.7041 0.8892 46 1 7.1769 6.3493 1.2112 47 1 8.9927 7.7913 2.5840 48 1 10.3407 10.3909 4.1858 49 1 3.6617 -2.4898 0.0863 50 1 5.1060 -1.4491 0.1419 51 1 3.8192 0.3094 1.2956 52 1 3.7103 -1.2197 2.2004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322756376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:40 Heat of formation + Delta-G solvation = -121.189370 kcal Electronic energy + Delta-G solvation = -30141.636912 eV Core-core repulsion = 25947.993577 eV Total energy + Delta-G solvation = -4193.643335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.17918 -38.75625 -38.27170 -36.60842 -35.54713 -34.18865 -33.82251 -32.96915 -31.70120 -31.14149 -28.24575 -27.79745 -26.83896 -25.51666 -24.39302 -23.41144 -22.59775 -21.74612 -21.10373 -19.23566 -19.11311 -17.86587 -17.24998 -16.73287 -16.48036 -16.27523 -16.03605 -15.80878 -15.66419 -14.85359 -14.64900 -14.50101 -14.36348 -14.11537 -13.98651 -13.78502 -13.49886 -13.39150 -13.07719 -12.88177 -12.74932 -12.62522 -12.56245 -12.24362 -12.12098 -11.96492 -11.80129 -11.68593 -11.47676 -11.39724 -11.31594 -11.06291 -11.01684 -10.78494 -10.74235 -10.43009 -10.19915 -9.98952 -9.48579 -9.37735 -9.00373 -8.44356 -8.03683 -7.94228 -6.40110 -3.80879 2.27090 2.62127 3.21461 3.26838 3.31511 3.58679 3.92723 4.00895 4.12112 4.24065 4.32865 4.36869 4.56809 4.59760 4.66421 4.81725 4.89142 4.95761 5.06563 5.08600 5.13622 5.15191 5.24455 5.26076 5.27057 5.28116 5.35794 5.38266 5.43088 5.46430 5.51081 5.57869 5.62889 5.66436 5.72038 5.80268 5.93835 5.98732 6.00986 6.06363 6.09929 6.26965 6.30496 7.00691 7.09069 7.24176 7.56502 7.68192 7.85749 8.07802 8.63134 9.19361 9.55986 10.07696 10.77583 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017487 B = 0.001794 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.766584 B =15607.413468 C =16309.460828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.095 0.905 4 C -0.127 4.127 5 C -0.111 4.111 6 H 0.097 0.903 7 C 0.517 3.483 8 O -0.528 6.528 9 N -0.615 5.615 10 C 0.067 3.933 11 C 0.115 3.885 12 C -0.130 4.130 13 C 0.063 3.937 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.151 4.151 28 C 0.060 3.940 29 O -0.381 6.381 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.052 0.948 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 -22.539 -17.575 30.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.112 0.888 4 C -0.165 4.165 5 C -0.133 4.133 6 H 0.115 0.885 7 C 0.305 3.695 8 O -0.405 6.405 9 N -0.348 5.348 10 C -0.076 4.076 11 C -0.008 4.008 12 C -0.169 4.169 13 C -0.067 4.067 14 N -0.301 5.301 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.188 4.188 28 C -0.017 4.017 29 O -0.300 6.300 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.070 0.930 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.767 -22.274 -16.584 30.160 hybrid contribution 1.686 0.602 -0.327 1.820 sum -10.080 -21.671 -16.911 29.279 Atomic orbital electron populations 1.21739 0.93451 1.02281 1.02482 1.22530 0.94835 0.97654 0.83874 0.88750 1.22019 0.92594 1.01864 1.00034 1.21419 0.97789 0.93785 1.00283 0.88490 1.20652 0.81699 0.91396 0.75736 1.90642 1.56965 1.44051 1.48813 1.47862 1.07434 1.07983 1.71500 1.22050 0.95042 0.89214 1.01301 1.21490 0.99231 0.82908 0.97169 1.21885 1.01926 0.96499 0.96629 1.21851 0.98885 0.96163 0.89791 1.60030 1.47552 1.03237 1.19304 1.21670 0.98434 0.91623 0.96439 1.19820 0.84031 0.83986 0.89562 1.90517 1.59004 1.47307 1.49929 1.41856 1.54496 1.13242 1.10460 1.19657 1.37527 0.99966 0.85774 0.87982 1.25270 0.97443 0.95461 0.99823 1.69606 1.44864 1.06594 1.33295 0.85907 0.79009 0.77281 0.81954 1.19940 1.20988 1.19858 1.22333 1.01699 1.00720 0.94080 1.22532 0.81626 0.99820 0.97738 1.87900 1.20379 1.78164 1.43561 0.92359 0.91860 0.91220 0.90477 0.90614 0.92453 0.90494 0.90377 0.90546 0.89500 0.90573 0.91954 0.95603 0.90921 0.83314 0.93929 0.89583 0.77450 0.91835 0.89718 0.89823 0.92965 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.56 37.16 0.36 -0.90 16 2 C 0.07 0.72 2.98 -26.68 -0.08 0.64 16 3 H 0.09 1.24 5.44 -51.93 -0.28 0.96 16 4 C -0.13 -1.05 4.61 -26.59 -0.12 -1.17 16 5 C -0.11 -0.82 2.21 -91.59 -0.20 -1.02 16 6 H 0.10 0.50 7.65 -51.93 -0.40 0.10 16 7 C 0.52 5.15 5.72 -10.99 -0.06 5.09 16 8 O -0.53 -7.16 13.12 5.55 0.07 -7.09 16 9 N -0.61 -5.03 2.87 -181.57 -0.52 -5.56 16 10 C 0.07 0.32 9.84 59.84 0.59 0.91 16 11 C 0.11 1.03 5.41 -4.04 -0.02 1.01 16 12 C -0.13 -1.42 5.80 -26.73 -0.15 -1.57 16 13 C 0.06 0.79 5.69 -3.83 -0.02 0.77 16 14 N -0.67 -11.19 6.13 -115.06 -0.70 -11.90 16 15 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 16 C 0.44 10.68 7.82 -10.98 -0.09 10.59 16 17 O -0.58 -16.24 15.78 5.55 0.09 -16.15 16 18 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 19 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 23 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.15 -1.01 5.30 -26.59 -0.14 -1.15 16 28 C 0.06 0.58 6.62 37.21 0.25 0.82 16 29 O -0.38 -4.43 10.41 -35.23 -0.37 -4.80 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.32 8.04 -51.93 -0.42 -0.10 16 37 H 0.08 0.29 4.40 -51.93 -0.23 0.06 16 38 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.09 0.92 7.37 -51.93 -0.38 0.53 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.35 5.90 8.43 -39.29 -0.33 5.57 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.44 5.59 -51.93 -0.29 0.15 16 51 H 0.05 0.60 7.38 -51.93 -0.38 0.22 16 52 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 410.12 15.07 6.18 6.18 Total: -1.00 -34.43 410.12 -8.47 -42.89 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -8.88 Total: 12.10 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 0.03 Total: 6.75 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.56 Total: -56.17 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.21 Total: -28.04 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.43 -8.47 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322756376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.295 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds