Wall clock time and date at job start Wed Apr 1 2020 00:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47915 * 2 1 4 4 C 1.53092 * 109.49189 * 120.02532 * 2 1 3 5 5 C 1.53179 * 109.16541 * 177.59656 * 4 2 1 6 6 H 1.08994 * 109.61791 * 183.11638 * 5 4 2 7 7 C 1.50700 * 109.54127 * 62.89047 * 5 4 2 8 8 O 1.21283 * 119.99803 * 0.44337 * 7 5 4 9 9 N 1.34777 * 119.99675 * 180.72212 * 7 5 4 10 10 C 1.46496 * 120.00345 * 359.72090 * 9 7 5 11 11 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 12 12 C 1.53009 * 109.47238 * 90.00006 * 11 9 7 13 13 C 1.52998 * 109.46920 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46713 * 179.97438 * 13 12 11 15 15 C 1.46906 * 110.99920 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47014 * 179.97438 * 15 14 13 17 17 O 1.21292 * 120.00267 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99662 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99892 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00123 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99990 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00019 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46985 * 90.00061 * 23 21 19 25 25 H 1.48498 * 109.46920 * 210.00196 * 23 21 19 26 26 H 1.48498 * 109.46675 * 329.99982 * 23 21 19 27 27 C 1.53177 * 109.03610 * 303.02514 * 5 4 2 28 28 C 1.53088 * 109.16593 * 56.97747 * 27 5 4 29 29 O 1.42902 * 109.48027 * 239.97922 * 2 1 3 30 30 H 1.08999 * 109.47081 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47241 * 300.02348 * 1 2 3 32 32 H 1.09000 * 109.47016 * 60.02201 * 1 2 3 33 33 H 1.09005 * 109.51756 * 57.69279 * 4 2 1 34 34 H 1.08999 * 109.52537 * 297.50794 * 4 2 1 35 35 H 1.08997 * 109.47115 * 90.00316 * 10 9 7 36 36 H 1.08995 * 109.47364 * 210.00706 * 10 9 7 37 37 H 1.09002 * 109.47090 * 330.00257 * 10 9 7 38 38 H 1.09000 * 109.46889 * 209.99487 * 11 9 7 39 39 H 1.09001 * 109.47460 * 330.00097 * 11 9 7 40 40 H 1.09000 * 109.46757 * 299.99562 * 12 11 9 41 41 H 1.08993 * 109.47081 * 59.99692 * 12 11 9 42 42 H 1.08994 * 109.47702 * 299.99786 * 13 12 11 43 43 H 1.09001 * 109.47349 * 60.00353 * 13 12 11 44 44 H 1.00906 * 111.00323 * 303.95361 * 14 13 12 45 45 H 1.08998 * 109.46965 * 299.99837 * 15 14 13 46 46 H 1.09006 * 109.47115 * 60.00022 * 15 14 13 47 47 H 0.96995 * 120.00236 * 359.97438 * 18 16 15 48 48 H 0.97003 * 120.00233 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.52246 * 176.88387 * 27 5 4 50 50 H 1.09001 * 109.52382 * 297.01263 * 27 5 4 51 51 H 1.09006 * 109.48012 * 62.37016 * 28 27 5 52 52 H 1.09003 * 109.48558 * 182.40435 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0408 -0.7221 1.2495 5 6 3.5714 -0.7705 1.2120 6 1 3.9409 -1.3314 2.0703 7 6 4.1212 0.6321 1.2516 8 8 3.3649 1.5783 1.3128 9 7 5.4530 0.8351 1.2133 10 6 6.3664 -0.3079 1.1395 11 6 5.9872 2.1988 1.2458 12 6 6.2227 2.6199 2.6978 13 6 6.7812 4.0439 2.7316 14 7 7.0068 4.4484 4.1257 15 6 7.5436 5.8140 4.1974 16 6 7.7609 6.1932 5.6396 17 8 7.4953 5.4035 6.5211 18 7 8.2515 7.4096 5.9499 19 6 8.4497 7.7544 7.2619 20 1 8.2132 7.0512 8.0467 21 6 8.9549 9.0086 7.5819 22 7 9.1454 9.3389 8.8395 23 14 9.3648 10.2246 6.2244 24 1 8.1706 11.0557 5.9272 25 1 10.4803 11.1004 6.6646 26 1 9.7693 9.4843 5.0023 27 6 4.0179 -1.4596 -0.0812 28 6 3.4307 -0.7089 -1.2792 29 8 2.0065 -0.6740 -1.1665 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5142 0.8898 32 1 -0.3633 0.5135 -0.8902 33 1 1.6447 -1.7374 1.2709 34 1 1.7151 -0.1843 2.1399 35 1 6.5577 -0.5531 0.0948 36 1 7.3057 -0.0548 1.6311 37 1 5.9154 -1.1662 1.6375 38 1 6.9302 2.2326 0.7002 39 1 5.2739 2.8796 0.7812 40 1 5.2797 2.5861 3.2434 41 1 6.9359 1.9391 3.1624 42 1 7.7243 4.0774 2.1861 43 1 6.0683 4.7250 2.2669 44 1 6.1602 4.3641 4.6682 45 1 8.4921 5.8600 3.6623 46 1 6.8358 6.5070 3.7425 47 1 8.4650 8.0407 5.2450 48 1 9.4978 10.2146 9.0629 49 1 5.1061 -1.4491 -0.1425 50 1 3.6627 -2.4901 -0.0862 51 1 3.8190 0.3095 -1.2959 52 1 3.7100 -1.2198 -2.2008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322756377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:49 Heat of formation + Delta-G solvation = -142.990221 kcal Electronic energy + Delta-G solvation = -29883.358099 eV Core-core repulsion = 25688.769408 eV Total energy + Delta-G solvation = -4194.588691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90071 -40.33741 -39.50134 -37.65112 -36.63459 -35.94442 -34.89833 -33.79791 -33.70807 -32.56771 -29.04345 -28.94426 -27.66690 -26.78487 -25.54447 -24.42102 -23.37711 -22.62078 -21.94469 -21.29854 -20.27133 -19.81171 -17.99747 -17.77627 -17.33543 -17.24675 -17.11929 -16.98949 -16.72201 -16.53599 -15.80111 -15.72327 -15.51024 -15.18876 -14.96481 -14.83386 -14.64106 -14.34649 -14.33562 -14.06604 -13.64528 -13.50423 -13.41087 -13.35976 -13.29250 -13.07912 -12.91755 -12.81588 -12.76605 -12.48528 -12.43373 -12.38181 -12.03645 -11.98662 -11.73524 -11.66071 -11.53471 -11.44740 -10.75028 -10.48275 -10.27244 -10.26105 -9.67019 -9.38246 -8.42956 -6.04374 1.29431 1.34772 1.44024 1.56395 1.92640 1.98776 2.21955 2.71789 2.83436 3.13170 3.37937 3.42950 3.62668 3.77565 3.91286 3.95316 4.05692 4.10404 4.14184 4.23825 4.29663 4.34955 4.39530 4.41251 4.47947 4.51679 4.53570 4.60834 4.65584 4.69259 4.72201 4.76892 4.78359 4.82719 4.88906 4.95783 5.04046 5.09299 5.12800 5.18534 5.22425 5.27340 5.50876 5.54938 5.88256 6.02885 6.28978 6.29482 6.36104 6.57678 6.85601 7.14233 7.37087 7.93621 8.74661 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.001624 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.467304 B =17235.650744 C =17521.226579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.054 0.946 4 C -0.127 4.127 5 C -0.111 4.111 6 H 0.123 0.877 7 C 0.508 3.492 8 O -0.578 6.578 9 N -0.613 5.613 10 C 0.063 3.937 11 C 0.120 3.880 12 C -0.120 4.120 13 C 0.066 3.934 14 N -0.689 5.689 15 C 0.062 3.938 16 C 0.446 3.554 17 O -0.616 6.616 18 N -0.590 5.590 19 C -0.331 4.331 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.230 1.230 27 C -0.150 4.150 28 C 0.054 3.946 29 O -0.398 6.398 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.340 0.660 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.390 0.610 48 H 0.280 0.720 49 H 0.112 0.888 50 H 0.099 0.901 51 H 0.029 0.971 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -22.876 -28.166 37.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.072 0.928 4 C -0.165 4.165 5 C -0.132 4.132 6 H 0.140 0.860 7 C 0.297 3.703 8 O -0.458 6.458 9 N -0.345 5.345 10 C -0.078 4.078 11 C -0.003 4.003 12 C -0.159 4.159 13 C -0.063 4.063 14 N -0.321 5.321 15 C -0.070 4.070 16 C 0.234 3.766 17 O -0.501 6.501 18 N -0.231 5.231 19 C -0.461 4.461 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.574 5.574 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.153 1.153 27 C -0.187 4.187 28 C -0.023 4.023 29 O -0.317 6.317 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.053 0.947 44 H 0.158 0.842 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.130 0.870 50 H 0.117 0.883 51 H 0.048 0.952 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.253 -23.157 -27.498 36.885 hybrid contribution -0.382 1.803 0.414 1.889 sum -8.635 -21.354 -27.084 35.554 Atomic orbital electron populations 1.21741 0.92479 1.03098 1.02515 1.22299 0.95721 0.95521 0.84819 0.92839 1.21987 0.93695 1.02248 0.98575 1.21482 0.96878 0.92592 1.02201 0.85962 1.21193 0.82199 0.92002 0.74874 1.90657 1.58286 1.45626 1.51239 1.47971 1.05884 1.08194 1.72416 1.22306 0.94126 0.87958 1.03424 1.21400 1.00272 0.82780 0.95839 1.21759 1.00276 0.96500 0.97360 1.21943 1.01050 0.95313 0.87988 1.60118 1.36303 1.23319 1.12325 1.21648 1.02999 0.90851 0.91549 1.21021 0.81445 0.81805 0.92302 1.90541 1.56106 1.51725 1.51716 1.42024 1.59435 1.14788 1.06875 1.19015 1.42744 1.00766 0.83527 0.92777 1.26146 0.96231 0.99150 0.99886 1.69806 1.45252 1.22864 1.19477 0.85344 0.79239 0.78247 0.78560 1.18211 1.19873 1.15330 1.22476 1.03801 1.00716 0.91751 1.22712 0.80606 0.99046 0.99925 1.87877 1.21960 1.78081 1.43824 0.91132 0.90711 0.92362 0.88891 0.91457 0.89914 0.89766 0.89319 0.87379 0.91647 0.94356 0.90896 0.88791 0.94679 0.84250 0.86354 0.90738 0.77391 0.91089 0.87002 0.88282 0.95249 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.57 71.98 0.69 -1.58 16 2 C 0.07 1.41 2.97 30.62 0.09 1.50 16 3 H 0.05 1.35 5.82 -2.39 -0.01 1.33 16 4 C -0.13 -1.97 4.56 30.68 0.14 -1.83 16 5 C -0.11 -1.38 2.23 -11.42 -0.03 -1.41 16 6 H 0.12 1.03 7.42 -2.39 -0.02 1.02 16 7 C 0.51 9.53 5.74 87.66 0.50 10.03 16 8 O -0.58 -16.00 13.43 -3.04 -0.04 -16.04 16 9 N -0.61 -8.55 2.87 -846.76 -2.43 -10.98 16 10 C 0.06 0.35 8.80 127.77 1.12 1.47 16 11 C 0.12 1.85 5.41 86.38 0.47 2.32 16 12 C -0.12 -2.39 5.80 30.60 0.18 -2.21 16 13 C 0.07 1.40 5.69 86.30 0.49 1.89 16 14 N -0.69 -21.07 6.13 -517.92 -3.17 -24.25 16 15 C 0.06 1.93 6.17 85.56 0.53 2.46 16 16 C 0.45 20.68 7.82 87.66 0.69 21.36 16 17 O -0.62 -35.20 15.78 -3.07 -0.05 -35.24 16 18 N -0.59 -28.28 5.09 -306.98 -1.56 -29.85 16 19 C -0.33 -19.73 10.16 84.04 0.85 -18.88 16 20 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 21 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 22 N -0.93 -56.76 13.96 21.66 0.30 -56.46 16 23 Si 0.97 38.97 27.74 68.60 1.90 40.88 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 27 C -0.15 -1.18 5.29 30.68 0.16 -1.02 16 28 C 0.05 0.70 6.62 72.01 0.48 1.17 16 29 O -0.40 -7.52 10.41 -148.98 -1.55 -9.07 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.07 1.22 8.02 -2.39 -0.02 1.20 16 35 H 0.08 0.14 6.88 -2.39 -0.02 0.12 16 36 H 0.08 0.40 8.07 -2.39 -0.02 0.38 16 37 H 0.09 0.26 6.06 -2.39 -0.01 0.25 16 38 H 0.11 1.04 8.07 -2.39 -0.02 1.02 16 39 H 0.07 1.27 7.42 -2.39 -0.02 1.25 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.34 11.62 8.43 -89.69 -0.76 10.86 16 45 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 47 H 0.39 15.39 5.76 -92.71 -0.53 14.86 16 48 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.11 0.35 4.47 -2.39 -0.01 0.34 16 50 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.03 0.48 7.38 -2.38 -0.02 0.46 16 52 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -85.62 405.65 -0.19 -85.81 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -0.42 Total: 40.31 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.83 Total: 14.89 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.87 Total: -121.54 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -1.64 Total: -60.35 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.88 kcal Total: -85.62 -0.19 -85.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322756377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.178 kcal (2) G-P(sol) polarization free energy of solvation -85.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds