Wall clock time and date at job start Wed Apr 1 2020 00:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47366 * 2 1 4 4 O 1.42901 * 109.47242 * 180.02562 * 3 2 1 5 5 C 1.42896 * 114.00262 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47353 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99734 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00252 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00418 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.52084 * 34.87645 * 9 8 6 11 11 C 1.53117 * 109.52533 * 274.68744 * 9 8 6 12 12 C 1.53037 * 109.27942 * 297.74649 * 11 9 8 13 13 N 1.46848 * 109.52424 * 300.82021 * 12 11 9 14 14 C 1.46901 * 111.00223 * 185.83466 * 13 12 11 15 15 C 1.50699 * 109.47113 * 300.41376 * 14 13 12 16 16 O 1.21291 * 120.00147 * 354.33600 * 15 14 13 17 17 N 1.34776 * 119.99899 * 174.32886 * 15 14 13 18 18 C 1.37098 * 120.00081 * 179.97438 * 17 15 14 19 19 H 1.07993 * 120.00141 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99830 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00145 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99801 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47063 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47155 * 60.00383 * 22 20 18 25 25 H 1.48500 * 109.47298 * 300.00506 * 22 20 18 26 26 C 1.46845 * 111.19492 * 61.73702 * 13 12 11 27 27 H 1.09004 * 109.46774 * 58.26828 * 26 13 12 28 28 C 1.53000 * 109.46144 * 178.24303 * 26 13 12 29 29 C 1.53037 * 109.52684 * 298.25885 * 26 13 12 30 30 H 1.08993 * 109.47506 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47307 * 300.00524 * 1 2 3 32 32 H 1.09007 * 109.47024 * 59.99824 * 1 2 3 33 33 H 1.09003 * 109.46785 * 239.99534 * 2 1 3 34 34 H 1.09007 * 109.47024 * 120.00176 * 2 1 3 35 35 H 1.08994 * 109.47351 * 60.00128 * 3 2 1 36 36 H 1.09006 * 109.46839 * 299.99661 * 3 2 1 37 37 H 1.08995 * 109.47383 * 59.99438 * 5 4 3 38 38 H 1.09001 * 109.46778 * 299.99054 * 5 4 3 39 39 H 0.97004 * 120.00238 * 0.02562 * 8 6 5 40 40 H 1.09004 * 109.50232 * 57.68564 * 11 9 8 41 41 H 1.09003 * 109.50716 * 177.76573 * 11 9 8 42 42 H 1.09000 * 109.46542 * 180.80348 * 12 11 9 43 43 H 1.09008 * 109.46332 * 60.83321 * 12 11 9 44 44 H 1.08994 * 109.46860 * 180.41208 * 14 13 12 45 45 H 1.09006 * 109.46630 * 60.41431 * 14 13 12 46 46 H 0.97005 * 120.00107 * 0.02562 * 17 15 14 47 47 H 0.97005 * 119.99855 * 359.97438 * 21 20 18 48 48 H 1.08999 * 109.47299 * 53.15657 * 28 26 13 49 49 H 1.08999 * 109.47767 * 173.15557 * 28 26 13 50 50 H 1.09003 * 109.47436 * 293.15559 * 28 26 13 51 51 H 1.09001 * 109.50117 * 179.12190 * 29 26 13 52 52 H 1.08998 * 109.50375 * 299.23735 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7478 -0.0001 6 6 5.5526 2.6288 -0.0001 7 8 6.0741 1.5338 -0.0001 8 7 6.3166 3.7390 -0.0002 9 6 7.7770 3.6233 0.0003 10 1 8.0737 2.7542 -0.5868 11 6 8.2774 3.4658 1.4388 12 6 7.9097 4.7158 2.2414 13 7 8.5209 5.8966 1.6182 14 6 8.3046 7.0962 2.4381 15 6 6.8253 7.3352 2.5982 16 8 6.0307 6.6432 1.9974 17 7 6.3853 8.3177 3.4089 18 6 5.0395 8.5355 3.5541 19 1 4.3320 7.9195 3.0191 20 6 4.5859 9.5489 4.3897 21 7 5.4468 10.2989 5.0403 22 14 2.7523 9.8452 4.5880 23 1 2.5321 10.9749 5.5263 24 1 2.1084 8.6205 5.1274 25 1 2.1586 10.1761 3.2677 26 6 8.0197 6.0954 0.2523 27 1 6.9355 6.2056 0.2757 28 6 8.6475 7.3575 -0.3424 29 6 8.3907 4.8866 -0.6097 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.7291 3.2882 0.8903 38 1 3.7285 3.2891 -0.8897 39 1 5.8995 4.6148 0.0002 40 1 7.8107 2.5915 1.8927 41 1 9.3601 3.3400 1.4358 42 1 8.2771 4.6129 3.2625 43 1 6.8260 4.8326 2.2556 44 1 8.7610 7.9571 1.9499 45 1 8.7576 6.9522 3.4191 46 1 7.0208 8.8713 3.8892 47 1 6.3990 10.1447 4.9375 48 1 9.7324 7.2998 -0.2545 49 1 8.3721 7.4396 -1.3939 50 1 8.2853 8.2326 0.1973 51 1 8.0050 5.0275 -1.6194 52 1 9.4753 4.7839 -0.6449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328238261.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:18 Heat of formation + Delta-G solvation = -122.497485 kcal Electronic energy + Delta-G solvation = -31415.573747 eV Core-core repulsion = 27221.873688 eV Total energy + Delta-G solvation = -4193.700059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.42183 -39.28894 -38.02516 -37.29333 -34.89750 -34.12362 -33.85027 -32.19151 -31.73724 -31.16214 -28.50509 -27.25727 -26.59702 -25.67190 -24.36241 -22.77419 -21.81143 -21.47650 -20.89746 -19.78892 -18.82780 -17.97456 -17.27294 -16.85696 -16.61507 -16.26894 -15.70071 -15.41887 -15.27772 -15.17190 -14.73440 -14.59475 -14.32124 -14.12991 -13.81490 -13.67046 -13.44467 -13.03981 -12.99709 -12.38433 -12.32626 -12.27598 -12.20260 -12.17810 -11.83448 -11.73630 -11.41196 -11.33976 -11.21871 -11.12230 -11.09575 -11.07995 -10.56351 -10.48943 -10.29988 -10.04344 -9.96584 -9.80876 -9.66129 -9.56906 -9.30951 -8.90436 -8.14632 -7.49392 -6.86839 -4.00559 2.70850 2.85123 3.19835 3.26040 3.45852 3.69102 3.90777 4.15821 4.20420 4.70554 4.72856 4.74991 4.82818 4.91394 4.93551 5.07171 5.09256 5.11203 5.15825 5.18868 5.26081 5.29587 5.36545 5.49563 5.51094 5.59830 5.65245 5.73684 5.74336 5.79889 5.88063 5.89658 5.90038 5.94430 5.97024 5.98075 6.06356 6.15797 6.27058 6.29620 6.49078 6.62230 6.68137 6.94741 7.28248 7.41305 7.63635 7.67044 7.95900 8.33549 8.46554 8.66457 9.35095 9.72816 10.56003 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007411 B = 0.003561 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3777.053462 B = 7860.737996 C =11012.418321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.365 6.365 5 C 0.043 3.957 6 C 0.517 3.483 7 O -0.530 6.530 8 N -0.716 5.716 9 C 0.149 3.851 10 H 0.085 0.915 11 C -0.123 4.123 12 C 0.039 3.961 13 N -0.507 5.507 14 C 0.037 3.963 15 C 0.411 3.589 16 O -0.591 6.591 17 N -0.567 5.567 18 C -0.384 4.384 19 H 0.098 0.902 20 C -0.007 4.007 21 N -0.896 5.896 22 Si 1.089 2.911 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.061 3.939 27 H 0.082 0.918 28 C -0.145 4.145 29 C -0.116 4.116 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.408 0.592 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.376 0.624 47 H 0.262 0.738 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.068 0.932 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -10.888 -10.320 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.284 6.284 5 C -0.037 4.037 6 C 0.302 3.698 7 O -0.406 6.406 8 N -0.371 5.371 9 C 0.045 3.955 10 H 0.103 0.897 11 C -0.162 4.162 12 C -0.089 4.089 13 N -0.230 5.230 14 C -0.095 4.095 15 C 0.198 3.802 16 O -0.478 6.478 17 N -0.204 5.204 18 C -0.514 4.514 19 H 0.116 0.884 20 C -0.211 4.211 21 N -0.535 5.535 22 Si 0.915 3.085 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.047 4.047 27 H 0.099 0.901 28 C -0.203 4.203 29 C -0.154 4.154 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.209 0.791 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.087 0.913 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.418 -11.432 -9.975 15.178 hybrid contribution 0.356 0.366 -0.263 0.574 sum -0.063 -11.066 -10.238 15.076 Atomic orbital electron populations 1.21699 0.94721 1.02191 1.02088 1.21439 0.95562 0.95489 1.03524 1.22635 0.80655 0.98133 1.00413 1.87968 1.19443 1.25451 1.95493 1.22205 0.91894 0.86674 1.02933 1.20162 0.88562 0.84648 0.76391 1.90689 1.74689 1.26549 1.48689 1.46066 1.06937 1.09106 1.75009 1.20951 0.78941 0.98652 0.96963 0.89692 1.21938 1.01291 0.97829 0.95163 1.22271 1.00867 0.88965 0.96795 1.62456 1.56543 1.02358 1.01674 1.22122 0.93826 0.94612 0.98974 1.21008 0.90903 0.83991 0.84347 1.90332 1.57137 1.49679 1.50692 1.42148 1.08155 1.29901 1.40179 1.20513 0.82673 1.19044 1.29167 0.88392 1.26518 1.08412 0.92718 0.93406 1.70905 1.03059 1.38848 1.40645 0.83155 0.71793 0.76722 0.76804 1.20304 1.21014 1.21010 1.21838 1.00478 0.94069 0.88293 0.90078 1.21870 1.01023 0.97266 1.00104 1.21923 1.01622 0.93542 0.98355 0.92039 0.92424 0.92543 0.91106 0.90999 0.92998 0.93232 0.89852 0.90440 0.75546 0.91415 0.90817 0.91924 0.90576 0.88970 0.89700 0.79091 0.92622 0.92208 0.92596 0.92596 0.91290 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.15 6.30 -26.73 -0.17 -1.32 16 3 C 0.06 0.62 5.94 37.16 0.22 0.84 16 4 O -0.37 -5.24 9.88 -55.14 -0.54 -5.78 16 5 C 0.04 0.56 6.42 36.00 0.23 0.79 16 6 C 0.52 7.99 7.88 -10.99 -0.09 7.91 16 7 O -0.53 -10.01 16.16 -14.35 -0.23 -10.24 16 8 N -0.72 -10.08 4.34 -53.69 -0.23 -10.31 16 9 C 0.15 2.00 2.81 -67.81 -0.19 1.81 16 10 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 11 C -0.12 -1.74 5.76 -26.65 -0.15 -1.90 16 12 C 0.04 0.62 4.85 -3.83 -0.02 0.60 16 13 N -0.51 -7.70 4.69 -228.12 -1.07 -8.77 16 14 C 0.04 0.60 5.45 -4.98 -0.03 0.57 16 15 C 0.41 8.67 7.18 -10.99 -0.08 8.60 16 16 O -0.59 -13.48 11.22 5.55 0.06 -13.41 16 17 N -0.57 -13.29 5.28 -10.96 -0.06 -13.35 16 18 C -0.38 -10.15 9.68 -14.93 -0.14 -10.30 16 19 H 0.10 2.72 7.16 -52.49 -0.38 2.34 16 20 C -0.01 -0.19 5.50 -17.47 -0.10 -0.28 16 21 N -0.90 -24.25 13.68 55.50 0.76 -23.50 16 22 Si 1.09 23.26 29.92 -169.99 -5.09 18.18 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 C 0.06 0.88 1.89 -67.72 -0.13 0.75 16 27 H 0.08 1.38 4.18 -51.93 -0.22 1.16 16 28 C -0.15 -1.87 8.52 37.16 0.32 -1.55 16 29 C -0.12 -1.40 5.03 -26.65 -0.13 -1.53 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.41 5.79 7.01 -40.82 -0.29 5.50 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.08 1.44 5.22 -51.92 -0.27 1.17 16 44 H 0.09 1.39 6.10 -51.93 -0.32 1.07 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.38 8.29 6.73 -40.82 -0.27 8.01 16 47 H 0.26 6.82 6.78 -40.82 -0.28 6.54 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.06 0.80 6.65 -51.93 -0.35 0.46 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -31.51 405.42 -9.12 -40.63 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -8.74 Total: 16.16 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.09 Total: 4.28 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.60 Total: -55.92 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.71 Total: -29.43 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.09 Total: 18.18 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.51 -9.12 -40.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328238261.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.864 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds