Wall clock time and date at job start Wed Apr 1 2020 00:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 O 1.42899 * 109.47421 * 179.97438 * 3 2 1 5 5 C 1.42894 * 114.00306 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47340 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99891 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99725 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.57878 * 324.84537 * 9 8 6 11 11 C 1.53118 * 109.51976 * 85.00692 * 9 8 6 12 12 C 1.53043 * 109.31033 * 177.57930 * 11 9 8 13 13 N 1.46849 * 109.51948 * 300.79513 * 12 11 9 14 14 C 1.46897 * 111.00117 * 185.83688 * 13 12 11 15 15 C 1.50700 * 109.46718 * 75.50147 * 14 13 12 16 16 O 1.21290 * 120.00279 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99887 * 179.97438 * 15 14 13 18 18 C 1.37101 * 120.00016 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99810 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00026 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00237 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99973 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47415 * 89.99681 * 22 20 18 24 24 H 1.48503 * 109.47263 * 209.99852 * 22 20 18 25 25 H 1.48500 * 109.47016 * 329.99703 * 22 20 18 26 26 C 1.46849 * 111.19448 * 61.74542 * 13 12 11 27 27 H 1.08998 * 109.46686 * 58.27101 * 26 13 12 28 28 C 1.53001 * 109.46014 * 178.24066 * 26 13 12 29 29 C 1.53039 * 109.52499 * 298.25137 * 26 13 12 30 30 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47136 * 300.00431 * 1 2 3 32 32 H 1.09002 * 109.46800 * 60.00376 * 1 2 3 33 33 H 1.08997 * 109.47450 * 240.00204 * 2 1 3 34 34 H 1.09002 * 109.47305 * 119.99778 * 2 1 3 35 35 H 1.08998 * 109.47222 * 59.99476 * 3 2 1 36 36 H 1.09002 * 109.46987 * 299.99509 * 3 2 1 37 37 H 1.09005 * 109.46720 * 60.00471 * 5 4 3 38 38 H 1.08997 * 109.47646 * 300.00597 * 5 4 3 39 39 H 0.96996 * 119.99791 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.50712 * 57.61471 * 11 9 8 41 41 H 1.09004 * 109.50024 * 297.53426 * 11 9 8 42 42 H 1.08999 * 109.46092 * 60.81196 * 12 11 9 43 43 H 1.09001 * 109.46127 * 180.79415 * 12 11 9 44 44 H 1.08998 * 109.47279 * 195.50548 * 14 13 12 45 45 H 1.08998 * 109.47112 * 315.50922 * 14 13 12 46 46 H 0.96996 * 119.99798 * 0.02562 * 17 15 14 47 47 H 0.97000 * 120.00413 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.47375 * 51.88931 * 28 26 13 49 49 H 1.09004 * 109.47100 * 171.89149 * 28 26 13 50 50 H 1.09005 * 109.47275 * 291.88728 * 28 26 13 51 51 H 1.09000 * 109.50343 * 179.12375 * 29 26 13 52 52 H 1.08995 * 109.50528 * 299.20309 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6291 0.0014 7 8 6.0741 1.5341 0.0022 8 7 6.3164 3.7395 0.0007 9 6 7.7768 3.6237 0.0014 10 1 8.0744 2.7584 0.5937 11 6 8.2776 3.4567 -1.4359 12 6 9.8068 3.3970 -1.4354 13 7 10.3459 4.6319 -0.8515 14 6 11.8103 4.6701 -0.9604 15 6 12.2001 4.9905 -2.3805 16 8 11.3424 5.1698 -3.2191 17 7 13.5019 5.0788 -2.7184 18 6 13.8566 5.3708 -4.0101 19 1 13.0928 5.5304 -4.7569 20 6 15.1986 5.4613 -4.3586 21 7 16.1279 5.2676 -3.4499 22 14 15.6817 5.8598 -6.1184 23 1 15.7970 7.3316 -6.2790 24 1 16.9874 5.2242 -6.4293 25 1 14.6450 5.3404 -7.0461 26 6 9.9177 4.7902 0.5442 27 1 10.2471 3.9287 1.1251 28 6 10.5358 6.0633 1.1257 29 6 8.3918 4.8915 0.6028 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.7282 3.2894 0.8897 38 1 3.7289 3.2885 -0.8903 39 1 5.8992 4.6151 -0.0004 40 1 7.9466 4.3034 -2.0374 41 1 7.8775 2.5337 -1.8557 42 1 10.1366 2.5420 -0.8452 43 1 10.1665 3.2922 -2.4590 44 1 12.2044 5.4370 -0.2936 45 1 12.2209 3.6998 -0.6811 46 1 14.1878 4.9358 -2.0476 47 1 17.0648 5.3311 -3.6930 48 1 10.3262 6.9039 0.4642 49 1 10.1075 6.2589 2.1088 50 1 11.6142 5.9341 1.2185 51 1 8.0734 4.9934 1.6403 52 1 8.0628 5.7612 0.0341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328238262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:22 Heat of formation + Delta-G solvation = -123.106244 kcal Electronic energy + Delta-G solvation = -29796.127905 eV Core-core repulsion = 25602.401448 eV Total energy + Delta-G solvation = -4193.726457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.31366 -39.22078 -38.12738 -37.49363 -35.13212 -34.07455 -33.83865 -32.27891 -31.90230 -31.11419 -28.83114 -27.28073 -26.68789 -25.90512 -24.37951 -22.86932 -22.03805 -21.65167 -20.55975 -19.71117 -19.07451 -17.80234 -17.49077 -17.16900 -16.88825 -16.07056 -15.89102 -15.47497 -15.35614 -15.15926 -14.78939 -14.52929 -14.31256 -14.02028 -13.81513 -13.71440 -13.48935 -13.33943 -13.12882 -12.55273 -12.53282 -12.39743 -12.29553 -12.08604 -11.93392 -11.72040 -11.65885 -11.46759 -11.35603 -11.30642 -11.07622 -10.98568 -10.83762 -10.65043 -10.39664 -10.36316 -10.17369 -10.09585 -9.86107 -9.44451 -9.15876 -8.42378 -7.91325 -7.79983 -6.37036 -3.77522 2.42341 2.52482 3.20699 3.28917 3.34824 3.60002 3.93881 3.99074 4.26619 4.40699 4.50902 4.59270 4.66472 4.72468 4.78688 4.87409 4.89958 4.91157 5.02014 5.04133 5.11643 5.23855 5.28087 5.29958 5.39047 5.44277 5.50698 5.56494 5.57036 5.68385 5.69541 5.78594 5.78815 5.79915 5.90436 6.00498 6.08517 6.13566 6.21426 6.27066 6.36239 6.44253 6.47620 6.67617 7.27929 7.34736 7.45267 7.59467 8.04544 8.11844 8.67943 9.23667 9.60793 10.13365 10.80926 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.001755 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.430919 B =15950.973450 C =16893.626459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.512 3.488 7 O -0.517 6.517 8 N -0.724 5.724 9 C 0.146 3.854 10 H 0.085 0.915 11 C -0.121 4.121 12 C 0.064 3.936 13 N -0.509 5.509 14 C 0.039 3.961 15 C 0.446 3.554 16 O -0.576 6.576 17 N -0.568 5.568 18 C -0.297 4.297 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.904 5.904 22 Si 0.929 3.071 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.084 3.916 27 H 0.039 0.961 28 C -0.149 4.149 29 C -0.114 4.114 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.400 0.600 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.026 0.974 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.060 0.940 51 H 0.070 0.930 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.922 -2.820 13.091 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.035 4.035 6 C 0.297 3.703 7 O -0.392 6.392 8 N -0.376 5.376 9 C 0.042 3.958 10 H 0.103 0.897 11 C -0.160 4.160 12 C -0.065 4.065 13 N -0.234 5.234 14 C -0.092 4.092 15 C 0.231 3.769 16 O -0.459 6.459 17 N -0.205 5.205 18 C -0.426 4.426 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.025 4.025 27 H 0.057 0.943 28 C -0.207 4.207 29 C -0.153 4.153 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.234 0.766 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.066 0.934 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.010 -3.302 12.237 28.038 hybrid contribution 0.779 0.191 -0.007 0.802 sum -24.231 -3.111 12.230 27.320 Atomic orbital electron populations 1.21696 0.94638 1.02370 1.01971 1.21454 0.95611 0.95380 1.03753 1.22643 0.80460 0.98361 1.00233 1.88016 1.19582 1.25209 1.95426 1.22192 0.91790 0.87002 1.02538 1.20232 0.88547 0.84781 0.76730 1.90748 1.74529 1.26450 1.47446 1.45972 1.07145 1.08515 1.76007 1.21122 0.77969 0.99083 0.97653 0.89739 1.21929 0.95555 1.02736 0.95817 1.22051 0.93849 0.89080 1.01488 1.61537 1.08993 1.37397 1.15492 1.21976 0.88119 1.01209 0.97929 1.19791 0.83381 0.84429 0.89261 1.90506 1.49415 1.54706 1.51266 1.41870 1.05265 1.62255 1.11136 1.19685 0.92155 1.44305 0.86493 0.88001 1.25229 0.95410 0.97631 0.99697 1.69611 1.00865 1.50156 1.33891 0.85879 0.77862 0.78492 0.82171 1.20472 1.20999 1.19492 1.21524 0.93978 0.97733 0.89254 0.94292 1.21943 1.00735 0.97673 1.00321 1.21893 0.95029 0.97599 1.00750 0.91912 0.92546 0.92498 0.90887 0.90963 0.93198 0.93106 0.90385 0.90215 0.76642 0.90556 0.91346 0.95568 0.88799 0.88801 0.93363 0.77594 0.91975 0.91211 0.92318 0.92092 0.91166 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.84 6.30 -26.73 -0.17 -1.01 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 O -0.36 -3.94 9.88 -55.14 -0.54 -4.49 16 5 C 0.04 0.37 6.42 36.00 0.23 0.60 16 6 C 0.51 5.93 7.87 -10.98 -0.09 5.84 16 7 O -0.52 -8.58 16.17 -14.35 -0.23 -8.81 16 8 N -0.72 -6.80 5.09 -53.64 -0.27 -7.08 16 9 C 0.15 1.69 2.52 -67.76 -0.17 1.52 16 10 H 0.08 1.13 7.59 -51.93 -0.39 0.73 16 11 C -0.12 -1.72 5.67 -26.65 -0.15 -1.87 16 12 C 0.06 1.04 5.11 -3.83 -0.02 1.02 16 13 N -0.51 -8.27 4.06 -228.12 -0.93 -9.19 16 14 C 0.04 0.69 5.31 -4.98 -0.03 0.66 16 15 C 0.45 10.54 7.49 -10.98 -0.08 10.46 16 16 O -0.58 -15.54 14.73 5.55 0.08 -15.46 16 17 N -0.57 -14.45 5.29 -10.96 -0.06 -14.51 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 22 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.08 1.05 2.44 -67.72 -0.17 0.88 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 C -0.15 -1.67 8.58 37.16 0.32 -1.35 16 29 C -0.11 -1.17 4.84 -26.60 -0.13 -1.30 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.40 2.45 8.60 -40.82 -0.35 2.10 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 1.84 6.69 -51.93 -0.35 1.49 16 44 H 0.09 1.50 5.43 -51.93 -0.28 1.22 16 45 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 46 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 50 H 0.06 0.69 6.41 -51.93 -0.33 0.36 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 417.20 15.07 6.29 6.29 Total: -1.00 -34.98 417.20 -9.21 -44.18 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -9.14 Total: 9.07 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.10 Total: 7.79 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.53 Total: -54.80 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.69 Total: -28.75 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.98 -9.21 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328238262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.924 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds