Wall clock time and date at job start Wed Apr 1 2020 00:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 O 1.42899 * 109.47421 * 179.97438 * 3 2 1 5 5 C 1.42894 * 114.00306 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47340 * 179.97438 * 5 4 3 7 7 O 1.21281 * 119.99891 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00070 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99725 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.57878 * 324.84537 * 9 8 6 11 11 C 1.53118 * 109.51976 * 85.00692 * 9 8 6 12 12 C 1.53043 * 109.31033 * 177.57930 * 11 9 8 13 13 N 1.46849 * 109.51948 * 300.79513 * 12 11 9 14 14 C 1.46897 * 111.00117 * 185.83688 * 13 12 11 15 15 C 1.50700 * 109.46718 * 75.50147 * 14 13 12 16 16 O 1.21290 * 120.00279 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99887 * 179.97438 * 15 14 13 18 18 C 1.37101 * 120.00016 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99810 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00026 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00237 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99973 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47415 * 89.99681 * 22 20 18 24 24 H 1.48503 * 109.47263 * 209.99852 * 22 20 18 25 25 H 1.48500 * 109.47016 * 329.99703 * 22 20 18 26 26 C 1.46849 * 111.19448 * 61.74542 * 13 12 11 27 27 H 1.08998 * 109.46686 * 58.27101 * 26 13 12 28 28 C 1.53001 * 109.46014 * 178.24066 * 26 13 12 29 29 C 1.53039 * 109.52499 * 298.25137 * 26 13 12 30 30 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47136 * 300.00431 * 1 2 3 32 32 H 1.09002 * 109.46800 * 60.00376 * 1 2 3 33 33 H 1.08997 * 109.47450 * 240.00204 * 2 1 3 34 34 H 1.09002 * 109.47305 * 119.99778 * 2 1 3 35 35 H 1.08998 * 109.47222 * 59.99476 * 3 2 1 36 36 H 1.09002 * 109.46987 * 299.99509 * 3 2 1 37 37 H 1.09005 * 109.46720 * 60.00471 * 5 4 3 38 38 H 1.08997 * 109.47646 * 300.00597 * 5 4 3 39 39 H 0.96996 * 119.99791 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.50712 * 57.61471 * 11 9 8 41 41 H 1.09004 * 109.50024 * 297.53426 * 11 9 8 42 42 H 1.08999 * 109.46092 * 60.81196 * 12 11 9 43 43 H 1.09001 * 109.46127 * 180.79415 * 12 11 9 44 44 H 1.08998 * 109.47279 * 195.50548 * 14 13 12 45 45 H 1.08998 * 109.47112 * 315.50922 * 14 13 12 46 46 H 0.96996 * 119.99798 * 0.02562 * 17 15 14 47 47 H 0.97000 * 120.00413 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.47375 * 51.88931 * 28 26 13 49 49 H 1.09004 * 109.47100 * 171.89149 * 28 26 13 50 50 H 1.09005 * 109.47275 * 291.88728 * 28 26 13 51 51 H 1.09000 * 109.50343 * 179.12375 * 29 26 13 52 52 H 1.08995 * 109.50528 * 299.20309 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6291 0.0014 7 8 6.0741 1.5341 0.0022 8 7 6.3164 3.7395 0.0007 9 6 7.7768 3.6237 0.0014 10 1 8.0744 2.7584 0.5937 11 6 8.2776 3.4567 -1.4359 12 6 9.8068 3.3970 -1.4354 13 7 10.3459 4.6319 -0.8515 14 6 11.8103 4.6701 -0.9604 15 6 12.2001 4.9905 -2.3805 16 8 11.3424 5.1698 -3.2191 17 7 13.5019 5.0788 -2.7184 18 6 13.8566 5.3708 -4.0101 19 1 13.0928 5.5304 -4.7569 20 6 15.1986 5.4613 -4.3586 21 7 16.1279 5.2676 -3.4499 22 14 15.6817 5.8598 -6.1184 23 1 15.7970 7.3316 -6.2790 24 1 16.9874 5.2242 -6.4293 25 1 14.6450 5.3404 -7.0461 26 6 9.9177 4.7902 0.5442 27 1 10.2471 3.9287 1.1251 28 6 10.5358 6.0633 1.1257 29 6 8.3918 4.8915 0.6028 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.7282 3.2894 0.8897 38 1 3.7289 3.2885 -0.8903 39 1 5.8992 4.6151 -0.0004 40 1 7.9466 4.3034 -2.0374 41 1 7.8775 2.5337 -1.8557 42 1 10.1366 2.5420 -0.8452 43 1 10.1665 3.2922 -2.4590 44 1 12.2044 5.4370 -0.2936 45 1 12.2209 3.6998 -0.6811 46 1 14.1878 4.9358 -2.0476 47 1 17.0648 5.3311 -3.6930 48 1 10.3262 6.9039 0.4642 49 1 10.1075 6.2589 2.1088 50 1 11.6142 5.9341 1.2185 51 1 8.0734 4.9934 1.6403 52 1 8.0628 5.7612 0.0341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328238262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:21 Heat of formation + Delta-G solvation = -149.110170 kcal Electronic energy + Delta-G solvation = -29797.255520 eV Core-core repulsion = 25602.401448 eV Total energy + Delta-G solvation = -4194.854072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.31496 -40.47797 -39.37093 -38.62537 -36.28084 -35.80303 -34.58922 -33.40001 -33.28753 -32.86867 -29.72444 -28.36132 -27.91834 -26.59894 -26.06878 -24.08886 -22.77578 -22.43786 -21.51761 -21.04361 -20.63925 -19.83812 -18.31449 -17.95525 -17.67017 -17.48547 -16.87475 -16.69628 -16.55029 -16.40115 -16.05855 -15.69651 -15.59489 -15.35686 -15.04825 -14.92387 -14.61339 -14.39321 -14.22408 -13.84320 -13.47016 -13.39098 -13.08394 -13.06958 -13.00635 -12.89526 -12.88591 -12.78737 -12.70172 -12.40593 -12.16271 -12.09384 -11.85901 -11.84234 -11.81157 -11.78860 -11.51015 -11.43204 -10.82411 -10.67569 -10.30559 -10.09760 -9.97274 -9.18267 -8.44396 -5.92750 1.38360 1.41472 1.54147 1.55707 1.79093 2.09813 2.29187 2.71797 2.97152 3.22257 3.41863 3.64011 3.78440 3.81843 3.96584 4.03332 4.08296 4.10933 4.24114 4.26418 4.31154 4.35548 4.41784 4.42536 4.44551 4.49894 4.51044 4.57042 4.60172 4.64942 4.81437 4.84425 4.86376 4.99592 5.01141 5.04130 5.14299 5.16250 5.22818 5.25520 5.34928 5.41926 5.42965 5.46827 5.91248 6.09659 6.11314 6.27413 6.57041 6.64079 7.16042 7.23887 7.60358 8.16945 8.73126 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.001755 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.430919 B =15950.973450 C =16893.626459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.056 3.944 4 O -0.404 6.404 5 C 0.047 3.953 6 C 0.507 3.493 7 O -0.577 6.577 8 N -0.706 5.706 9 C 0.154 3.846 10 H 0.069 0.931 11 C -0.112 4.112 12 C 0.067 3.933 13 N -0.523 5.523 14 C 0.051 3.949 15 C 0.443 3.557 16 O -0.614 6.614 17 N -0.577 5.577 18 C -0.331 4.331 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.991 3.009 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.275 1.275 26 C 0.079 3.921 27 H 0.046 0.954 28 C -0.146 4.146 29 C -0.104 4.104 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.420 0.580 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.031 0.969 43 H 0.051 0.949 44 H 0.119 0.881 45 H 0.062 0.938 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.057 0.943 51 H 0.103 0.897 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.342 -1.297 14.791 30.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.324 6.324 5 C -0.032 4.032 6 C 0.294 3.706 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.049 3.951 10 H 0.087 0.913 11 C -0.151 4.151 12 C -0.061 4.061 13 N -0.248 5.248 14 C -0.080 4.080 15 C 0.230 3.770 16 O -0.499 6.499 17 N -0.215 5.215 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.563 5.563 22 Si 0.815 3.185 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.200 1.200 26 C -0.029 4.029 27 H 0.064 0.936 28 C -0.203 4.203 29 C -0.142 4.142 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.257 0.743 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.136 0.864 45 H 0.079 0.921 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.108 0.892 50 H 0.076 0.924 51 H 0.122 0.878 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -26.450 -1.732 13.972 29.963 hybrid contribution 1.183 -0.300 -0.525 1.329 sum -25.267 -2.032 13.446 28.694 Atomic orbital electron populations 1.21663 0.92876 1.02828 1.02772 1.21493 0.97119 0.95451 1.02472 1.22819 0.78810 0.98545 1.01793 1.87971 1.21593 1.26987 1.95803 1.22335 0.88812 0.86641 1.05416 1.20992 0.90268 0.84103 0.75247 1.90725 1.75818 1.28702 1.50286 1.45779 1.06119 1.09262 1.74825 1.20885 0.79396 0.99521 0.95330 0.91269 1.21798 0.93966 1.01536 0.97804 1.21898 0.95300 0.89708 0.99222 1.61505 1.07775 1.37086 1.18458 1.21841 0.89686 1.02546 0.93949 1.20839 0.82328 0.82412 0.91375 1.90475 1.50304 1.55927 1.53227 1.41937 1.06141 1.62915 1.10534 1.19641 0.92385 1.46609 0.87443 0.90471 1.25994 0.94828 0.96815 1.03592 1.69672 1.01254 1.49926 1.35432 0.84952 0.77621 0.78626 0.77270 1.19533 1.19612 1.19997 1.21734 0.95596 0.98822 0.86739 0.93563 1.21930 1.00679 0.96149 1.01538 1.21856 0.93177 0.96510 1.02642 0.91701 0.91547 0.91819 0.92424 0.92077 0.91255 0.91717 0.86814 0.87580 0.74271 0.91291 0.92948 0.95106 0.93022 0.86367 0.92051 0.77147 0.91395 0.92501 0.89161 0.92388 0.87840 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.91 71.98 0.71 -0.44 16 2 C -0.13 -1.68 6.30 30.59 0.19 -1.48 16 3 C 0.06 0.70 5.94 71.98 0.43 1.13 16 4 O -0.40 -8.36 9.88 -129.94 -1.28 -9.65 16 5 C 0.05 0.66 6.42 71.24 0.46 1.11 16 6 C 0.51 11.19 7.87 87.66 0.69 11.88 16 7 O -0.58 -19.51 16.17 16.00 0.26 -19.25 16 8 N -0.71 -11.90 5.09 -442.01 -2.25 -14.14 16 9 C 0.15 3.39 2.52 45.10 0.11 3.50 16 10 H 0.07 1.80 7.59 -2.39 -0.02 1.78 16 11 C -0.11 -3.24 5.67 30.65 0.17 -3.07 16 12 C 0.07 2.28 5.11 86.33 0.44 2.72 16 13 N -0.52 -16.80 4.06 -875.64 -3.55 -20.35 16 14 C 0.05 1.80 5.31 85.56 0.45 2.26 16 15 C 0.44 21.55 7.49 87.66 0.66 22.21 16 16 O -0.61 -34.57 14.73 -3.06 -0.05 -34.61 16 17 N -0.58 -30.21 5.29 -306.98 -1.62 -31.83 16 18 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 19 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 22 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 26 C 0.08 1.79 2.44 44.94 0.11 1.90 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 C -0.15 -2.81 8.58 71.98 0.62 -2.20 16 29 C -0.10 -1.82 4.84 30.68 0.15 -1.68 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.42 3.77 8.60 -92.71 -0.80 2.98 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 2.17 6.69 -2.39 -0.02 2.15 16 44 H 0.12 3.63 5.43 -2.39 -0.01 3.62 16 45 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 46 H 0.39 19.64 7.90 -92.71 -0.73 18.91 16 47 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.09 1.20 8.13 -2.39 -0.02 1.18 16 50 H 0.06 1.15 6.41 -2.38 -0.02 1.14 16 51 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -80.25 417.20 -0.32 -80.56 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -0.61 Total: 34.38 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.48 Total: 19.30 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -7.14 Total: -116.44 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -1.07 Total: -63.51 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -80.25 -0.32 -80.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328238262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.545 kcal (2) G-P(sol) polarization free energy of solvation -80.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds