Wall clock time and date at job start Wed Apr 1 2020 01:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.08367 * 2 1 4 4 C 1.54449 * 109.09302 * 240.98827 * 2 1 3 5 5 N 1.44806 * 109.08177 * 163.60124 * 4 2 1 6 6 C 1.46890 * 110.99837 * 219.85625 * 5 4 2 7 7 C 1.53002 * 109.47276 * 165.84149 * 6 5 4 8 8 C 1.53007 * 109.47329 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.46907 * 179.97438 * 8 7 6 10 10 C 1.34770 * 119.99525 * 179.97438 * 9 8 7 11 11 O 1.21348 * 120.00813 * 0.02562 * 10 9 8 12 12 C 1.49450 * 119.99996 * 180.02562 * 10 9 8 13 13 O 1.21358 * 119.99679 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00238 * 180.02562 * 12 10 9 15 15 C 1.46501 * 120.00066 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47250 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.46920 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00571 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99754 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00035 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99928 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47136 * 90.00522 * 21 19 17 23 23 H 1.48501 * 109.47103 * 210.00323 * 21 19 17 24 24 H 1.48494 * 109.47155 * 330.00097 * 21 19 17 25 25 C 1.48062 * 114.17159 * 93.47940 * 5 4 2 26 26 C 1.53361 * 112.16117 * 318.16714 * 25 5 4 27 27 C 1.51030 * 111.73763 * 318.80861 * 26 25 5 28 28 O 1.36475 * 109.09792 * 119.08199 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.91583 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.91774 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.91755 * 1 2 3 32 32 H 1.08994 * 109.53095 * 283.47726 * 4 2 1 33 33 H 1.08994 * 109.53672 * 43.71917 * 4 2 1 34 34 H 1.09005 * 109.47309 * 285.84411 * 6 5 4 35 35 H 1.09001 * 109.47651 * 45.84460 * 6 5 4 36 36 H 1.08997 * 109.47083 * 299.99710 * 7 6 5 37 37 H 1.09000 * 109.47075 * 60.00153 * 7 6 5 38 38 H 1.08997 * 109.46929 * 299.99960 * 8 7 6 39 39 H 1.09000 * 109.46791 * 60.00134 * 8 7 6 40 40 H 0.97000 * 119.99857 * 0.02562 * 9 8 7 41 41 H 0.97000 * 120.00376 * 0.02562 * 14 12 10 42 42 H 1.09005 * 109.47058 * 300.00271 * 15 14 12 43 43 H 1.08998 * 109.47261 * 59.99605 * 15 14 12 44 44 H 1.08997 * 109.46703 * 299.99643 * 16 15 14 45 45 H 1.09000 * 109.46972 * 59.99789 * 16 15 14 46 46 H 0.97003 * 120.00172 * 179.97438 * 20 19 17 47 47 H 1.09006 * 108.94186 * 197.47910 * 25 5 4 48 48 H 1.09002 * 108.94439 * 78.86666 * 25 5 4 49 49 H 1.09006 * 109.03253 * 198.22373 * 26 25 5 50 50 H 1.09007 * 109.02694 * 79.39026 * 26 25 5 51 51 H 1.09003 * 109.77003 * 332.35690 * 27 26 25 52 52 H 1.08998 * 109.77741 * 211.56527 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8864 1.0302 0.0000 4 6 2.0352 -0.7079 -1.2764 5 7 3.4306 -0.3787 -1.4794 6 6 3.7168 -0.1544 -2.9026 7 6 5.0802 0.5247 -3.0478 8 6 5.3787 0.7577 -4.5303 9 7 6.6838 1.4084 -4.6692 10 6 7.1582 1.7125 -5.8935 11 8 6.5041 1.4478 -6.8808 12 6 8.4899 2.3758 -6.0354 13 8 9.1443 2.6402 -5.0481 14 7 8.9640 2.6804 -7.2597 15 6 10.2697 3.3302 -7.3987 16 6 10.5677 3.5640 -8.8811 17 6 11.9105 4.2329 -9.0240 18 1 12.4930 4.4681 -8.1455 19 6 12.3951 4.5456 -10.2764 20 7 13.5672 5.1289 -10.4012 21 14 11.3875 4.1394 -11.7960 22 1 10.5030 5.2861 -12.1245 23 1 12.2989 3.8742 -12.9380 24 1 10.5595 2.9349 -11.5335 25 6 4.3756 -1.3578 -0.8960 26 6 3.9335 -1.8309 0.4942 27 6 3.3974 -0.6918 1.3285 28 8 1.9765 -0.6268 1.1270 29 1 -0.3633 0.5280 0.8817 30 1 -0.3633 -1.0276 0.0165 31 1 -0.3634 0.4995 -0.8981 32 1 1.9281 -1.7864 -1.1615 33 1 1.4529 -0.3718 -2.1343 34 1 3.7296 -1.1106 -3.4258 35 1 2.9453 0.4845 -3.3322 36 1 5.0674 1.4808 -2.5248 37 1 5.8519 -0.1142 -2.6184 38 1 5.3916 -0.1987 -5.0530 39 1 4.6070 1.3964 -4.9602 40 1 7.2068 1.6197 -3.8801 41 1 8.4409 2.4695 -8.0488 42 1 10.2572 4.2864 -6.8757 43 1 11.0411 2.6912 -6.9690 44 1 10.5801 2.6079 -9.4043 45 1 9.7962 4.2032 -9.3103 46 1 13.9083 5.3485 -11.2823 47 1 5.3596 -0.8956 -0.8160 48 1 4.4448 -2.2209 -1.5582 49 1 4.7867 -2.2757 1.0064 50 1 3.1553 -2.5860 0.3818 51 1 3.8576 0.2446 1.0130 52 1 3.6126 -0.8728 2.3816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329420739.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:50 Heat of formation + Delta-G solvation = -122.065700 kcal Electronic energy + Delta-G solvation = -28926.936036 eV Core-core repulsion = 24733.254700 eV Total energy + Delta-G solvation = -4193.681336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56693 -40.39676 -38.48321 -37.55818 -35.81436 -35.02603 -34.06173 -32.85369 -32.37441 -30.34657 -30.23840 -27.48833 -26.85324 -25.65349 -24.30220 -22.92929 -22.28787 -21.57815 -20.90957 -20.64920 -20.08475 -18.30012 -17.27722 -17.11211 -16.91154 -16.62164 -16.47788 -16.29534 -15.82448 -15.48690 -15.20245 -14.91464 -14.46812 -14.29232 -14.19228 -14.14159 -13.62158 -13.49710 -13.41529 -13.22809 -12.97305 -12.69981 -12.62608 -12.47732 -12.22371 -12.06935 -11.82159 -11.68888 -11.59220 -11.50453 -11.27122 -11.25999 -11.09885 -10.94261 -10.45643 -10.31888 -9.97235 -9.92811 -9.48574 -9.44586 -9.32420 -8.79124 -8.76535 -8.62400 -6.13434 -4.14205 1.52030 2.41466 3.20224 3.25667 3.30000 3.33676 3.33728 3.35512 3.79136 4.28310 4.30589 4.35721 4.36768 4.49142 4.56884 4.60737 4.66330 4.67853 4.79040 4.85920 4.98528 5.01517 5.01573 5.10684 5.17456 5.19730 5.21034 5.25666 5.29068 5.36032 5.49728 5.59107 5.61456 5.66178 5.68911 5.74619 5.95385 6.02531 6.08943 6.45626 6.47332 6.49548 6.61629 6.91769 7.07984 7.17184 7.20090 7.53957 7.61399 7.82818 8.19083 8.40650 8.89820 9.46531 10.99309 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032144 B = 0.001396 C = 0.001366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.857846 B =20047.733134 C =20488.738327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.105 3.895 3 H 0.053 0.947 4 C 0.025 3.975 5 N -0.556 5.556 6 C 0.066 3.934 7 C -0.130 4.130 8 C 0.119 3.881 9 N -0.705 5.705 10 C 0.508 3.492 11 O -0.522 6.522 12 C 0.498 3.502 13 O -0.529 6.529 14 N -0.691 5.691 15 C 0.127 3.873 16 C -0.024 4.024 17 C -0.525 4.525 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.265 1.265 25 C 0.058 3.942 26 C -0.157 4.157 27 C 0.075 3.925 28 O -0.384 6.384 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.414 0.586 41 H 0.409 0.591 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.025 0.975 45 H 0.020 0.980 46 H 0.265 0.735 47 H 0.079 0.921 48 H 0.037 0.963 49 H 0.080 0.920 50 H 0.071 0.929 51 H 0.066 0.934 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.633 -14.583 22.361 37.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 H 0.071 0.929 4 C -0.104 4.104 5 N -0.280 5.280 6 C -0.062 4.062 7 C -0.168 4.168 8 C -0.005 4.005 9 N -0.359 5.359 10 C 0.289 3.711 11 O -0.397 6.397 12 C 0.278 3.722 13 O -0.407 6.407 14 N -0.342 5.342 15 C 0.005 3.995 16 C -0.062 4.062 17 C -0.563 4.563 18 H 0.095 0.905 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.190 1.190 25 C -0.069 4.069 26 C -0.195 4.195 27 C -0.001 4.001 28 O -0.303 6.303 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.250 0.750 41 H 0.244 0.756 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.055 0.945 49 H 0.099 0.901 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -26.529 -14.183 22.558 37.601 hybrid contribution -0.249 -0.847 -1.612 1.838 sum -26.778 -15.031 20.946 37.172 Atomic orbital electron populations 1.21815 0.93239 1.02735 1.02549 1.21241 0.94100 0.95517 0.84644 0.92891 1.22839 0.88324 0.99554 0.99650 1.60618 1.03670 1.48243 1.15507 1.22035 0.97294 0.99453 0.87451 1.21808 0.97432 1.02587 0.94995 1.21374 0.84377 0.98130 0.96632 1.45717 1.20866 1.60625 1.08670 1.20428 0.87212 0.79672 0.83789 1.90753 1.59234 1.52317 1.37432 1.19961 0.86448 0.80965 0.84848 1.90749 1.59132 1.53405 1.37391 1.46210 1.22043 1.58408 1.07504 1.21721 0.80648 0.96777 1.00324 1.19825 0.98342 0.97497 0.90489 1.20876 1.01334 1.39444 0.94649 0.90531 1.24980 0.94834 0.94316 0.98996 1.69897 1.18205 1.41464 1.23957 0.86768 0.80312 0.79441 0.82700 1.20154 1.21214 1.18975 1.22419 0.96209 0.93416 0.94876 1.22070 1.02160 0.99598 0.95646 1.22332 0.80223 0.98242 0.99298 1.86431 1.23161 1.78481 1.42203 0.91699 0.92059 0.91148 0.93238 0.90446 0.94311 0.90180 0.89975 0.90961 0.91114 0.90876 0.75018 0.75569 0.91236 0.91225 0.95719 0.96145 0.92495 0.90312 0.94460 0.90139 0.91018 0.91562 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.45 37.16 0.35 -0.38 16 2 C 0.10 0.67 3.03 -25.97 -0.08 0.60 16 3 H 0.05 0.38 8.13 -51.92 -0.42 -0.04 16 4 C 0.03 0.15 4.82 -4.19 -0.02 0.13 16 5 N -0.56 -3.31 3.91 -234.18 -0.92 -4.22 16 6 C 0.07 0.36 4.87 -3.83 -0.02 0.34 16 7 C -0.13 -0.75 5.26 -26.73 -0.14 -0.89 16 8 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 9 N -0.70 -7.34 5.55 -60.73 -0.34 -7.68 16 10 C 0.51 7.12 7.89 -11.59 -0.09 7.03 16 11 O -0.52 -8.31 16.48 5.50 0.09 -8.21 16 12 C 0.50 8.12 7.89 -11.58 -0.09 8.03 16 13 O -0.53 -9.61 16.48 5.49 0.09 -9.52 16 14 N -0.69 -11.79 5.55 -60.73 -0.34 -12.12 16 15 C 0.13 2.52 5.61 -4.04 -0.02 2.50 16 16 C -0.02 -0.54 4.15 -27.88 -0.12 -0.66 16 17 C -0.52 -14.51 9.66 -34.44 -0.33 -14.85 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 21 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 25 C 0.06 0.32 4.94 -3.00 -0.01 0.30 16 26 C -0.16 -0.80 5.39 -27.53 -0.15 -0.95 16 27 C 0.07 0.44 6.49 36.17 0.23 0.67 16 28 O -0.38 -2.94 9.61 -21.27 -0.20 -3.15 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.27 8.12 -51.93 -0.42 -0.16 16 32 H 0.05 0.32 7.01 -51.93 -0.36 -0.04 16 33 H 0.08 0.38 7.22 -51.93 -0.38 0.01 16 34 H 0.04 0.21 7.99 -51.93 -0.41 -0.20 16 35 H 0.08 0.41 7.65 -51.93 -0.40 0.01 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.41 6.80 -51.93 -0.35 0.05 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.41 3.87 7.94 -40.82 -0.32 3.55 16 41 H 0.41 6.48 7.94 -40.82 -0.32 6.15 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 45 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 46 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.08 0.41 7.03 -51.93 -0.37 0.05 16 48 H 0.04 0.21 7.93 -51.93 -0.41 -0.20 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.43 7.29 -51.92 -0.38 0.05 16 51 H 0.07 0.41 7.61 -51.93 -0.40 0.02 16 52 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 413.38 15.07 6.23 6.23 Total: -1.00 -32.49 413.38 -9.00 -41.48 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -9.10 Total: 2.40 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.61 Total: 4.71 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.82 Total: -50.34 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.02 Total: -20.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.49 -9.00 -41.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329420739.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.581 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds