Wall clock time and date at job start Wed Apr 1 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 C 1.53005 * 109.46820 * 119.99586 * 2 1 3 5 5 H 1.08998 * 109.47498 * 299.99528 * 4 2 1 6 6 C 1.52998 * 109.47368 * 60.00363 * 4 2 1 7 7 C 1.50707 * 109.46455 * 179.97438 * 4 2 1 8 8 O 1.21275 * 120.00398 * 359.97438 * 7 4 2 9 9 N 1.34780 * 119.99450 * 179.97438 * 7 4 2 10 10 C 1.46498 * 119.99984 * 174.92464 * 9 7 4 11 11 C 1.53007 * 113.38360 * 307.50705 * 10 9 7 12 12 C 1.52998 * 109.46965 * 292.15551 * 11 10 9 13 13 O 1.42896 * 109.47057 * 184.63082 * 12 11 10 14 14 C 1.53506 * 114.17232 * 174.42292 * 10 9 7 15 15 N 1.47474 * 88.00084 * 272.40959 * 14 10 9 16 16 C 1.46901 * 111.00455 * 221.26878 * 15 14 10 17 17 C 1.50693 * 109.47565 * 170.00013 * 16 15 14 18 18 O 1.21296 * 119.99650 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00252 * 180.02562 * 17 16 15 20 20 C 1.37103 * 120.00230 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99821 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00059 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00172 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46871 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46791 * 120.00189 * 24 22 20 27 27 H 1.48501 * 109.47203 * 240.00345 * 24 22 20 28 28 C 1.47479 * 87.83583 * 332.95920 * 15 14 10 29 29 H 1.09005 * 109.47260 * 300.00017 * 1 2 3 30 30 H 1.08995 * 109.47568 * 60.00154 * 1 2 3 31 31 H 1.08997 * 109.47429 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47029 * 239.99423 * 2 1 3 33 33 H 1.08991 * 109.47721 * 59.99847 * 3 2 1 34 34 H 1.09006 * 109.46781 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46981 * 299.99531 * 3 2 1 36 36 H 1.08998 * 109.46972 * 59.99096 * 6 4 2 37 37 H 1.08992 * 109.47196 * 179.97438 * 6 4 2 38 38 H 1.09001 * 109.46982 * 299.99990 * 6 4 2 39 39 H 0.97004 * 120.00286 * 354.92846 * 9 7 4 40 40 H 1.09000 * 109.46589 * 52.15570 * 11 10 9 41 41 H 1.08999 * 109.46862 * 172.15439 * 11 10 9 42 42 H 1.08998 * 109.47044 * 304.62881 * 12 11 10 43 43 H 1.09000 * 109.47443 * 64.62606 * 12 11 10 44 44 H 0.96700 * 114.00073 * 180.02562 * 13 12 11 45 45 H 1.09009 * 113.47933 * 157.61031 * 14 10 9 46 46 H 1.09001 * 113.47575 * 27.21007 * 14 10 9 47 47 H 1.09002 * 109.46817 * 289.99889 * 16 15 14 48 48 H 1.09005 * 109.46969 * 49.99328 * 16 15 14 49 49 H 0.97001 * 119.99967 * 359.97438 * 19 17 16 50 50 H 0.97004 * 120.00113 * 179.97438 * 23 22 20 51 51 H 1.08996 * 113.47857 * 141.77478 * 28 15 14 52 52 H 1.08998 * 113.48014 * 272.18345 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6767 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 3.5470 -0.7217 1.2490 8 8 4.1534 -0.1974 0.3389 9 7 4.2209 -1.3049 2.2601 10 6 5.6815 -1.4039 2.2059 11 6 6.1997 -2.0371 0.9130 12 6 5.8003 -3.5135 0.8724 13 8 6.3750 -4.1309 -0.2810 14 6 6.3210 -1.9680 3.4823 15 7 6.3561 -0.5917 4.0110 16 6 7.6208 -0.3285 4.7105 17 6 7.7270 1.1425 5.0201 18 8 6.8368 1.8975 4.6900 19 7 8.8114 1.6194 5.6627 20 6 8.9082 2.9578 5.9439 21 1 8.1153 3.6299 5.6508 22 6 10.0260 3.4493 6.6069 23 7 10.9906 2.6315 6.9641 24 14 10.1582 5.2730 6.9894 25 1 8.9496 5.9733 6.4853 26 1 10.2641 5.4642 8.4582 27 1 11.3657 5.8310 6.3292 28 6 6.4150 -0.1170 2.6160 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.8933 -2.6775 0.3595 37 1 1.8937 -2.6775 2.1392 38 1 0.4400 -2.1637 1.2494 39 1 3.7388 -1.6591 3.0237 40 1 5.7671 -1.5200 0.0565 41 1 7.2859 -1.9534 0.8774 42 1 6.1633 -4.0129 1.7707 43 1 4.7144 -3.5950 0.8251 44 1 6.1627 -5.0699 -0.3714 45 1 7.3103 -2.3961 3.3198 46 1 5.6615 -2.6314 4.0418 47 1 7.6476 -0.8981 5.6395 48 1 8.4557 -0.6276 4.0767 49 1 9.5234 1.0157 5.9263 50 1 11.7711 2.9747 7.4266 51 1 5.8344 0.7886 2.4406 52 1 7.4293 -0.0500 2.2225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329705309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:16 Heat of formation + Delta-G solvation = -96.101449 kcal Electronic energy + Delta-G solvation = -31260.417268 eV Core-core repulsion = 27067.861827 eV Total energy + Delta-G solvation = -4192.555441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.18461 -39.52284 -37.89071 -36.98758 -36.16442 -34.29649 -33.80090 -32.02352 -31.22571 -30.49202 -28.98539 -27.38792 -26.11239 -25.41746 -24.61158 -23.81247 -22.10538 -21.44467 -19.72611 -19.28946 -19.16646 -17.89438 -17.64496 -17.31432 -16.20558 -15.91985 -15.60995 -15.41725 -15.12254 -14.80323 -14.75691 -14.51269 -14.38936 -14.07850 -13.92720 -13.69803 -13.23601 -13.13503 -13.08040 -12.44797 -12.39124 -12.34428 -12.20638 -12.09760 -11.97665 -11.70026 -11.66072 -11.54910 -11.38270 -11.20855 -11.05008 -10.92995 -10.84103 -10.71695 -10.47671 -10.33830 -10.22259 -10.17733 -9.51554 -9.39049 -9.02177 -8.74809 -8.25697 -7.96283 -6.41772 -3.82430 2.63047 3.00855 3.16551 3.27121 3.34684 3.80177 3.90430 4.05594 4.23827 4.29047 4.42763 4.53518 4.67629 4.85189 4.91566 4.97444 5.01630 5.10268 5.12073 5.19807 5.23688 5.25201 5.32681 5.36284 5.46355 5.52544 5.54119 5.55948 5.60663 5.64515 5.67770 5.69841 5.80185 5.81589 5.84562 5.92571 6.04732 6.14677 6.19833 6.25463 6.26622 6.44533 6.54580 6.66200 7.12660 7.40098 7.50266 7.55599 8.05919 8.25822 8.61307 9.18293 9.53959 10.05769 10.76117 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.002643 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.033141 B =10589.889552 C =12134.696622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.161 4.161 4 C -0.108 4.108 5 H 0.097 0.903 6 C -0.145 4.145 7 C 0.522 3.478 8 O -0.526 6.526 9 N -0.698 5.698 10 C 0.150 3.850 11 C -0.122 4.122 12 C 0.083 3.917 13 O -0.574 6.574 14 C -0.007 4.007 15 N -0.439 5.439 16 C 0.008 3.992 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.017 3.983 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.403 0.597 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.376 0.624 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.056 0.944 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.095 0.905 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 -16.462 -10.948 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.218 4.218 4 C -0.129 4.129 5 H 0.115 0.885 6 C -0.202 4.202 7 C 0.309 3.691 8 O -0.402 6.402 9 N -0.350 5.350 10 C 0.063 3.937 11 C -0.160 4.160 12 C 0.005 3.995 13 O -0.379 6.379 14 C -0.137 4.137 15 N -0.161 5.161 16 C -0.124 4.124 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.113 4.113 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.223 0.777 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.110 0.890 48 H 0.075 0.925 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.114 0.886 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.175 -14.659 -11.317 24.589 hybrid contribution 0.974 -0.450 0.720 1.292 sum -15.201 -15.109 -10.598 23.909 Atomic orbital electron populations 1.21931 0.95188 1.01607 1.01949 1.20877 0.94910 0.96907 0.96534 1.22083 1.04207 0.94634 1.00879 1.21407 0.91712 0.98428 1.01370 0.88455 1.21831 1.01971 0.94132 1.02284 1.20591 0.89815 0.77119 0.81614 1.90616 1.70075 1.43115 1.36421 1.45498 1.05518 1.61152 1.22795 1.21279 0.81020 0.97483 0.93967 1.21733 1.01975 0.93769 0.98568 1.22086 0.96351 0.93742 0.87309 1.86503 1.76817 1.27859 1.46691 1.24270 1.00923 0.94551 0.93907 1.68857 1.30986 1.04108 1.12138 1.22506 0.91649 0.97782 1.00479 1.19639 0.84406 0.88633 0.84408 1.90539 1.40124 1.58620 1.56755 1.41869 1.18109 1.09358 1.50851 1.19744 1.04920 0.83781 1.34236 0.87911 1.25256 0.95338 1.00273 0.97104 1.69619 1.08874 1.35381 1.40518 0.85806 0.78396 0.82187 0.78011 1.19208 1.20743 1.20740 1.24109 1.00041 0.98615 0.88523 0.92643 0.92541 0.92536 0.90722 0.93392 0.89641 0.93203 0.92215 0.92228 0.91165 0.76173 0.88309 0.90207 0.93796 0.93989 0.77715 0.90021 0.89413 0.89022 0.92550 0.77528 0.91938 0.88611 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 2 C -0.07 -0.70 2.15 -90.62 -0.19 -0.89 16 3 C -0.16 -1.84 8.87 37.16 0.33 -1.51 16 4 C -0.11 -0.96 2.32 -91.77 -0.21 -1.18 16 5 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.14 -0.93 8.74 37.16 0.32 -0.60 16 7 C 0.52 6.21 6.58 -10.98 -0.07 6.14 16 8 O -0.53 -8.04 11.65 5.56 0.06 -7.98 16 9 N -0.70 -7.53 5.10 -47.23 -0.24 -7.77 16 10 C 0.15 1.82 0.70 -131.46 -0.09 1.73 16 11 C -0.12 -1.45 4.92 -26.73 -0.13 -1.59 16 12 C 0.08 0.78 6.89 37.16 0.26 1.04 16 13 O -0.57 -5.80 13.66 -35.23 -0.48 -6.28 16 14 C -0.01 -0.08 6.23 -7.56 -0.05 -0.12 16 15 N -0.44 -7.06 6.06 -245.85 -1.49 -8.55 16 16 C 0.01 0.14 5.31 -4.98 -0.03 0.11 16 17 C 0.44 10.61 7.62 -10.99 -0.08 10.53 16 18 O -0.58 -15.94 15.34 5.54 0.09 -15.85 16 19 N -0.56 -14.47 5.29 -10.97 -0.06 -14.53 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 24 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.02 0.28 6.11 -7.45 -0.05 0.23 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 32 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.22 5.52 -51.93 -0.29 0.94 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.32 7.69 -51.93 -0.40 -0.08 16 38 H 0.07 0.37 6.43 -51.93 -0.33 0.04 16 39 H 0.40 3.50 8.25 -40.82 -0.34 3.16 16 40 H 0.10 1.43 5.99 -51.93 -0.31 1.12 16 41 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 42 H 0.04 0.35 7.51 -51.93 -0.39 -0.04 16 43 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 1.95 9.12 45.56 0.42 2.37 16 45 H 0.08 0.84 7.73 -51.92 -0.40 0.43 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 49 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.10 1.90 8.13 -51.93 -0.42 1.48 16 52 H 0.07 1.20 7.57 -51.93 -0.39 0.81 16 LS Contribution 412.15 15.07 6.21 6.21 Total: -1.00 -34.72 412.15 -8.18 -42.89 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -8.06 Total: 14.50 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 0.09 Total: 5.08 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -1.07 Total: -54.86 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.33 Total: -30.11 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.72 -8.18 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329705309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.208 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds