Wall clock time and date at job start Wed Apr 1 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 C 1.53005 * 109.46820 * 119.99586 * 2 1 3 5 5 H 1.08998 * 109.47498 * 299.99528 * 4 2 1 6 6 C 1.52998 * 109.47368 * 60.00363 * 4 2 1 7 7 C 1.50707 * 109.46455 * 179.97438 * 4 2 1 8 8 O 1.21275 * 120.00398 * 359.97438 * 7 4 2 9 9 N 1.34780 * 119.99450 * 179.97438 * 7 4 2 10 10 C 1.46498 * 119.99984 * 174.92464 * 9 7 4 11 11 C 1.53007 * 113.38360 * 307.50705 * 10 9 7 12 12 C 1.52998 * 109.46965 * 292.15551 * 11 10 9 13 13 O 1.42896 * 109.47057 * 184.63082 * 12 11 10 14 14 C 1.53506 * 114.17232 * 174.42292 * 10 9 7 15 15 N 1.47474 * 88.00084 * 272.40959 * 14 10 9 16 16 C 1.46901 * 111.00455 * 221.26878 * 15 14 10 17 17 C 1.50693 * 109.47565 * 170.00013 * 16 15 14 18 18 O 1.21296 * 119.99650 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00252 * 180.02562 * 17 16 15 20 20 C 1.37103 * 120.00230 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99821 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00059 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00172 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46871 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46791 * 120.00189 * 24 22 20 27 27 H 1.48501 * 109.47203 * 240.00345 * 24 22 20 28 28 C 1.47479 * 87.83583 * 332.95920 * 15 14 10 29 29 H 1.09005 * 109.47260 * 300.00017 * 1 2 3 30 30 H 1.08995 * 109.47568 * 60.00154 * 1 2 3 31 31 H 1.08997 * 109.47429 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47029 * 239.99423 * 2 1 3 33 33 H 1.08991 * 109.47721 * 59.99847 * 3 2 1 34 34 H 1.09006 * 109.46781 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46981 * 299.99531 * 3 2 1 36 36 H 1.08998 * 109.46972 * 59.99096 * 6 4 2 37 37 H 1.08992 * 109.47196 * 179.97438 * 6 4 2 38 38 H 1.09001 * 109.46982 * 299.99990 * 6 4 2 39 39 H 0.97004 * 120.00286 * 354.92846 * 9 7 4 40 40 H 1.09000 * 109.46589 * 52.15570 * 11 10 9 41 41 H 1.08999 * 109.46862 * 172.15439 * 11 10 9 42 42 H 1.08998 * 109.47044 * 304.62881 * 12 11 10 43 43 H 1.09000 * 109.47443 * 64.62606 * 12 11 10 44 44 H 0.96700 * 114.00073 * 180.02562 * 13 12 11 45 45 H 1.09009 * 113.47933 * 157.61031 * 14 10 9 46 46 H 1.09001 * 113.47575 * 27.21007 * 14 10 9 47 47 H 1.09002 * 109.46817 * 289.99889 * 16 15 14 48 48 H 1.09005 * 109.46969 * 49.99328 * 16 15 14 49 49 H 0.97001 * 119.99967 * 359.97438 * 19 17 16 50 50 H 0.97004 * 120.00113 * 179.97438 * 23 22 20 51 51 H 1.08996 * 113.47857 * 141.77478 * 28 15 14 52 52 H 1.08998 * 113.48014 * 272.18345 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6767 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 3.5470 -0.7217 1.2490 8 8 4.1534 -0.1974 0.3389 9 7 4.2209 -1.3049 2.2601 10 6 5.6815 -1.4039 2.2059 11 6 6.1997 -2.0371 0.9130 12 6 5.8003 -3.5135 0.8724 13 8 6.3750 -4.1309 -0.2810 14 6 6.3210 -1.9680 3.4823 15 7 6.3561 -0.5917 4.0110 16 6 7.6208 -0.3285 4.7105 17 6 7.7270 1.1425 5.0201 18 8 6.8368 1.8975 4.6900 19 7 8.8114 1.6194 5.6627 20 6 8.9082 2.9578 5.9439 21 1 8.1153 3.6299 5.6508 22 6 10.0260 3.4493 6.6069 23 7 10.9906 2.6315 6.9641 24 14 10.1582 5.2730 6.9894 25 1 8.9496 5.9733 6.4853 26 1 10.2641 5.4642 8.4582 27 1 11.3657 5.8310 6.3292 28 6 6.4150 -0.1170 2.6160 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.8933 -2.6775 0.3595 37 1 1.8937 -2.6775 2.1392 38 1 0.4400 -2.1637 1.2494 39 1 3.7388 -1.6591 3.0237 40 1 5.7671 -1.5200 0.0565 41 1 7.2859 -1.9534 0.8774 42 1 6.1633 -4.0129 1.7707 43 1 4.7144 -3.5950 0.8251 44 1 6.1627 -5.0699 -0.3714 45 1 7.3103 -2.3961 3.3198 46 1 5.6615 -2.6314 4.0418 47 1 7.6476 -0.8981 5.6395 48 1 8.4557 -0.6276 4.0767 49 1 9.5234 1.0157 5.9263 50 1 11.7711 2.9747 7.4266 51 1 5.8344 0.7886 2.4406 52 1 7.4293 -0.0500 2.2225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329705309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:15 Heat of formation + Delta-G solvation = -126.707872 kcal Electronic energy + Delta-G solvation = -31261.744462 eV Core-core repulsion = 27067.861827 eV Total energy + Delta-G solvation = -4193.882635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26301 -40.63275 -39.64435 -37.79348 -37.00301 -36.01645 -35.21002 -33.34736 -32.91695 -31.23338 -30.31534 -28.12954 -27.34839 -26.98877 -25.57049 -24.95107 -23.16289 -22.42815 -21.01624 -20.52936 -20.27127 -19.91261 -18.44208 -18.22972 -17.81606 -17.06426 -16.74412 -16.55382 -16.48027 -16.28088 -15.77258 -15.59626 -15.45815 -15.39301 -15.12671 -14.74049 -14.61225 -14.40581 -13.90521 -13.72113 -13.54496 -13.39893 -13.18832 -13.05348 -13.01694 -12.96780 -12.86305 -12.62177 -12.57887 -12.43859 -12.34638 -12.20077 -12.13416 -11.89000 -11.60270 -11.55897 -11.49196 -11.43899 -10.89194 -10.39130 -10.34489 -10.06783 -10.04537 -9.76756 -8.50150 -5.98775 1.33307 1.38510 1.52684 1.70095 2.01861 2.11680 2.26044 2.80805 2.97671 3.16608 3.32546 3.40499 3.67239 3.77461 3.87640 3.97977 4.10893 4.18192 4.26543 4.27778 4.33642 4.40484 4.43728 4.47375 4.49995 4.55476 4.58902 4.64433 4.66213 4.71405 4.81155 4.83593 4.94686 4.95341 4.98756 5.05820 5.11057 5.18541 5.24124 5.26374 5.37213 5.37744 5.48334 5.55572 5.67508 5.82637 6.02206 6.57007 6.64188 6.93886 7.09860 7.36674 7.52566 8.09216 8.67519 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.002643 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.033141 B =10589.889552 C =12134.696622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.160 4.160 4 C -0.103 4.103 5 H 0.105 0.895 6 C -0.139 4.139 7 C 0.514 3.486 8 O -0.566 6.566 9 N -0.690 5.690 10 C 0.167 3.833 11 C -0.118 4.118 12 C 0.090 3.910 13 O -0.597 6.597 14 C 0.009 3.991 15 N -0.459 5.459 16 C 0.020 3.980 17 C 0.438 3.562 18 O -0.621 6.621 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.074 0.926 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.276 1.276 26 H -0.268 1.268 27 H -0.270 1.270 28 C 0.006 3.994 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.416 0.584 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.398 0.602 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.079 0.921 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.046 0.954 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.808 -19.228 -9.945 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C -0.217 4.217 4 C -0.124 4.124 5 H 0.123 0.877 6 C -0.196 4.196 7 C 0.302 3.698 8 O -0.445 6.445 9 N -0.342 5.342 10 C 0.078 3.922 11 C -0.157 4.157 12 C 0.012 3.988 13 O -0.406 6.406 14 C -0.120 4.120 15 N -0.181 5.181 16 C -0.111 4.111 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.092 0.908 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.201 1.201 26 H -0.193 1.193 27 H -0.195 1.195 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.254 0.746 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.248 0.752 45 H 0.121 0.879 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.097 0.903 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.065 0.935 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.060 -17.490 -10.290 26.511 hybrid contribution 1.254 0.446 0.346 1.375 sum -15.806 -17.045 -9.944 25.283 Atomic orbital electron populations 1.21883 0.92954 1.02952 1.02246 1.20860 0.96632 0.95143 0.96469 1.22044 1.01959 0.96647 1.01092 1.21442 0.89252 1.00537 1.01205 0.87735 1.21831 1.03017 0.91828 1.02922 1.21253 0.91206 0.76234 0.81088 1.90619 1.71154 1.44663 1.38067 1.45453 1.04996 1.60723 1.23052 1.21070 0.81518 0.94656 0.94919 1.21628 1.01287 0.95788 0.97005 1.22009 0.96859 0.91727 0.88199 1.86445 1.77149 1.29885 1.47076 1.24354 1.02626 0.92380 0.92620 1.68826 1.30182 1.07400 1.11720 1.22422 0.93417 0.92862 1.02430 1.20808 0.82897 0.91305 0.82394 1.90512 1.41512 1.60754 1.57976 1.41932 1.18944 1.08691 1.51563 1.19643 1.05224 0.85014 1.36381 0.90777 1.26010 0.94515 1.04393 0.96222 1.69667 1.09091 1.36940 1.40284 0.84902 0.78172 0.77044 0.78402 1.20108 1.19276 1.19514 1.24076 0.99643 0.98862 0.89844 0.92198 0.92440 0.90631 0.91970 0.93419 0.93064 0.92714 0.92643 0.90532 0.89376 0.74573 0.91472 0.90858 0.91171 0.93109 0.75197 0.87905 0.85865 0.86273 0.90291 0.76916 0.91227 0.93541 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.84 71.98 0.64 -1.22 16 2 C -0.07 -1.36 2.15 -10.79 -0.02 -1.38 16 3 C -0.16 -3.90 8.87 71.98 0.64 -3.26 16 4 C -0.10 -1.75 2.32 -11.54 -0.03 -1.78 16 5 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 6 C -0.14 -1.39 8.74 71.98 0.63 -0.76 16 7 C 0.51 12.45 6.58 87.66 0.58 13.03 16 8 O -0.57 -18.60 11.65 -3.01 -0.04 -18.64 16 9 N -0.69 -14.28 5.10 -421.71 -2.15 -16.43 16 10 C 0.17 3.92 0.70 4.11 0.00 3.92 16 11 C -0.12 -2.77 4.92 30.60 0.15 -2.62 16 12 C 0.09 1.46 6.89 71.98 0.50 1.96 16 13 O -0.60 -10.85 13.66 -148.98 -2.03 -12.88 16 14 C 0.01 0.17 6.23 83.57 0.52 0.69 16 15 N -0.46 -14.33 6.06 -931.73 -5.65 -19.98 16 16 C 0.02 0.69 5.31 85.55 0.45 1.14 16 17 C 0.44 21.47 7.62 87.66 0.67 22.14 16 18 O -0.62 -36.02 15.34 -3.08 -0.05 -36.06 16 19 N -0.57 -30.08 5.29 -306.99 -1.62 -31.70 16 20 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 21 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 24 Si 0.99 43.92 29.55 68.60 2.03 45.94 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 C 0.01 0.21 6.11 83.64 0.51 0.73 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.71 6.43 -2.39 -0.02 0.69 16 32 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.62 5.52 -2.38 -0.01 1.60 16 35 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.53 7.69 -2.39 -0.02 0.51 16 38 H 0.09 0.61 6.43 -2.39 -0.02 0.59 16 39 H 0.42 6.24 8.25 -92.71 -0.77 5.47 16 40 H 0.07 2.04 5.99 -2.39 -0.01 2.02 16 41 H 0.07 1.78 8.01 -2.39 -0.02 1.76 16 42 H 0.07 0.80 7.51 -2.39 -0.02 0.78 16 43 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.40 3.08 9.12 -74.06 -0.68 2.40 16 45 H 0.10 1.65 7.73 -2.38 -0.02 1.64 16 46 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 48 H 0.08 2.35 7.56 -2.38 -0.02 2.33 16 49 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 50 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 51 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 52 H 0.06 2.25 7.57 -2.39 -0.02 2.23 16 Total: -1.00 -81.02 412.15 -3.94 -84.96 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -1.22 Total: 40.78 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 6.52 Total: 13.80 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -9.14 Total: -117.90 kcal Atomic # 8 Polarization: -65.47 SS G_CDS: -2.12 Total: -67.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -81.02 -3.94 -84.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329705309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.748 kcal (2) G-P(sol) polarization free energy of solvation -81.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds