Wall clock time and date at job start Wed Apr 1 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47128 * 2 1 4 4 C 1.52995 * 109.47379 * 239.99999 * 2 1 3 5 5 H 1.09001 * 109.47131 * 59.99854 * 4 2 1 6 6 C 1.53000 * 109.46767 * 299.99766 * 4 2 1 7 7 C 1.50699 * 109.47478 * 180.02562 * 4 2 1 8 8 O 1.21285 * 119.99470 * 359.97438 * 7 4 2 9 9 N 1.34767 * 120.00316 * 179.97438 * 7 4 2 10 10 C 1.46504 * 120.00047 * 174.96021 * 9 7 4 11 11 C 1.52994 * 112.93934 * 293.59668 * 10 9 7 12 12 C 1.52997 * 109.47465 * 303.65093 * 11 10 9 13 13 O 1.42903 * 109.47088 * 175.13378 * 12 11 10 14 14 C 1.53938 * 113.72981 * 161.89136 * 10 9 7 15 15 N 1.47962 * 86.17984 * 269.36405 * 14 10 9 16 16 C 1.46902 * 110.99778 * 222.42107 * 15 14 10 17 17 C 1.50700 * 109.47070 * 269.35825 * 16 15 14 18 18 O 1.21299 * 119.99859 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00248 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00312 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99989 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00521 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99303 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00241 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47200 * 60.00294 * 24 22 20 26 26 H 1.48506 * 109.46997 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47298 * 300.00168 * 24 22 20 28 28 C 1.47962 * 90.76383 * 335.31000 * 15 14 10 29 29 H 1.09004 * 109.46871 * 59.99704 * 1 2 3 30 30 H 1.09004 * 109.47016 * 300.00257 * 1 2 3 31 31 H 1.08993 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46641 * 119.99591 * 2 1 3 33 33 H 1.09004 * 109.47382 * 59.99968 * 3 2 1 34 34 H 1.09001 * 109.47059 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46995 * 299.99909 * 3 2 1 36 36 H 1.09001 * 109.46911 * 60.00522 * 6 4 2 37 37 H 1.09004 * 109.47158 * 179.97438 * 6 4 2 38 38 H 1.09000 * 109.47397 * 300.00497 * 6 4 2 39 39 H 0.96998 * 119.99853 * 354.96703 * 9 7 4 40 40 H 1.09004 * 109.47293 * 63.65739 * 11 10 9 41 41 H 1.08999 * 109.47196 * 183.65057 * 11 10 9 42 42 H 1.08997 * 109.47342 * 295.13819 * 12 11 10 43 43 H 1.09001 * 109.47004 * 55.14181 * 12 11 10 44 44 H 0.96705 * 113.99454 * 179.97438 * 13 12 11 45 45 H 1.08989 * 113.76161 * 23.68301 * 14 10 9 46 46 H 1.09004 * 113.75621 * 155.05142 * 14 10 9 47 47 H 1.09000 * 109.47271 * 29.36287 * 16 15 14 48 48 H 1.09002 * 109.47048 * 149.36391 * 16 15 14 49 49 H 0.96998 * 119.99680 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99457 * 180.02562 * 23 22 20 51 51 H 1.08994 * 113.76053 * 270.37151 * 28 15 14 52 52 H 1.09000 * 113.85642 * 139.01473 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 1 1.6768 -0.2074 -2.1392 6 6 1.5301 -2.1637 -1.2491 7 6 3.5471 -0.7218 -1.2489 8 8 4.1534 -0.1965 -0.3392 9 7 4.2209 -1.3059 -2.2593 10 6 5.6818 -1.2111 -2.3168 11 6 6.1778 0.2161 -2.5573 12 6 5.5528 0.7636 -3.8420 13 8 5.9256 2.1333 -4.0069 14 6 6.3349 -2.2596 -3.2354 15 7 6.4132 -3.1190 -2.0336 16 6 7.7096 -3.8063 -1.9615 17 6 7.6134 -5.1352 -2.6657 18 8 6.5679 -5.4760 -3.1776 19 7 8.6893 -5.9446 -2.7275 20 6 8.6019 -7.1533 -3.3685 21 1 7.6708 -7.4571 -3.8237 22 6 9.7110 -7.9880 -3.4318 23 7 10.8435 -7.6189 -2.8767 24 14 9.5917 -9.6352 -4.3046 25 1 9.2259 -9.4163 -5.7271 26 1 10.9023 -10.3297 -4.2324 27 1 8.5523 -10.4688 -3.6489 28 6 6.3953 -1.9277 -1.1562 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 0.4401 -2.1637 -1.2492 37 1 1.8931 -2.6775 -2.1393 38 1 1.8934 -2.6775 -0.3590 39 1 3.7387 -1.7889 -2.9485 40 1 5.8908 0.8471 -1.7160 41 1 7.2634 0.2120 -2.6545 42 1 5.9087 0.1850 -4.6944 43 1 4.4673 0.6877 -3.7790 44 1 5.5643 2.5460 -4.8033 45 1 5.6680 -2.6436 -4.0072 46 1 7.3077 -1.9580 -3.6238 47 1 8.4725 -3.1944 -2.4428 48 1 7.9780 -3.9671 -0.9174 49 1 9.5254 -5.6719 -2.3184 50 1 11.6178 -8.2015 -2.9212 51 1 7.3857 -1.5292 -0.9365 52 1 5.7771 -2.0450 -0.2662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329705310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:20 Heat of formation + Delta-G solvation = -126.491300 kcal Electronic energy + Delta-G solvation = -31145.573663 eV Core-core repulsion = 26951.700419 eV Total energy + Delta-G solvation = -4193.873244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15259 -40.51837 -39.59224 -37.80505 -36.96316 -35.95764 -35.21578 -33.29375 -32.88315 -31.15424 -30.30543 -28.10482 -27.34546 -27.12598 -25.56478 -24.99768 -23.02715 -22.35395 -21.00615 -20.53287 -20.24178 -19.87320 -18.45921 -18.23720 -17.78851 -17.14791 -16.71233 -16.49651 -16.23452 -16.14455 -16.07542 -15.58973 -15.41136 -15.31830 -15.13734 -14.71231 -14.54019 -14.47369 -13.89482 -13.75040 -13.51066 -13.40578 -13.09524 -13.04855 -12.99117 -12.95604 -12.85065 -12.71435 -12.43943 -12.42112 -12.28796 -12.23397 -12.10607 -11.91932 -11.61222 -11.55175 -11.48472 -11.42967 -10.90077 -10.43263 -10.33264 -10.06777 -10.00517 -9.63003 -8.46018 -5.94778 1.39624 1.41235 1.52230 1.71503 2.06308 2.12454 2.28227 2.71559 3.02779 3.20450 3.29832 3.36535 3.68972 3.81384 3.89117 3.98579 4.11255 4.13641 4.24500 4.27574 4.33745 4.38008 4.41553 4.46236 4.50513 4.55535 4.58906 4.64350 4.68302 4.73500 4.79700 4.85011 4.94354 4.94612 4.96006 5.06871 5.11154 5.14199 5.24568 5.33550 5.38867 5.40918 5.48633 5.56386 5.69128 5.83969 6.05293 6.60655 6.61032 6.88911 7.13361 7.34194 7.57205 8.13068 8.71276 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.002420 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.061056 B =11566.872453 C =12664.108870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.155 4.155 4 C -0.099 4.099 5 H 0.117 0.883 6 C -0.145 4.145 7 C 0.518 3.482 8 O -0.561 6.561 9 N -0.696 5.696 10 C 0.168 3.832 11 C -0.113 4.113 12 C 0.084 3.916 13 O -0.594 6.594 14 C 0.013 3.987 15 N -0.471 5.471 16 C 0.020 3.980 17 C 0.445 3.555 18 O -0.615 6.615 19 N -0.577 5.577 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.008 3.992 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.412 0.588 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.397 0.603 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.090 0.910 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 19.512 -0.018 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C -0.212 4.212 4 C -0.120 4.120 5 H 0.135 0.865 6 C -0.202 4.202 7 C 0.307 3.693 8 O -0.440 6.440 9 N -0.348 5.348 10 C 0.080 3.920 11 C -0.152 4.152 12 C 0.006 3.994 13 O -0.402 6.402 14 C -0.116 4.116 15 N -0.193 5.193 16 C -0.111 4.111 17 C 0.233 3.767 18 O -0.500 6.500 19 N -0.215 5.215 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.121 4.121 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.249 0.751 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.247 0.753 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.118 0.882 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.108 0.892 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.047 18.902 0.947 24.813 hybrid contribution 1.007 -0.555 -0.813 1.408 sum -15.040 18.347 0.134 23.724 Atomic orbital electron populations 1.21887 0.93249 1.02543 1.02491 1.20869 0.96466 0.95941 0.96073 1.22002 1.02258 0.95524 1.01383 1.21417 0.89521 0.99317 1.01753 0.86497 1.21847 1.03041 0.93095 1.02248 1.21120 0.91003 0.76522 0.80703 1.90620 1.71110 1.46076 1.36181 1.45612 1.05260 1.55600 1.28348 1.21394 0.81544 0.93221 0.95853 1.21662 1.01217 0.93927 0.98372 1.22035 0.98365 0.82145 0.96846 1.86430 1.77742 1.25813 1.50262 1.24384 1.01542 0.90976 0.94661 1.68372 1.28961 1.17040 1.04958 1.22382 0.93233 0.93721 1.01797 1.20680 0.83881 0.87610 0.84575 1.90473 1.30613 1.76930 1.52005 1.41956 1.12146 1.16999 1.50355 1.19610 0.98447 0.95200 1.32864 0.90309 1.26046 0.94226 1.03024 0.98115 1.69674 1.02011 1.39612 1.45004 0.84993 0.77704 0.77109 0.78568 1.19516 1.19580 1.19809 1.24293 1.00872 0.89562 0.97399 0.91537 0.92383 0.91644 0.92782 0.92939 0.92370 0.92525 0.89253 0.91616 0.93736 0.75061 0.91583 0.89951 0.92345 0.93045 0.75301 0.89068 0.88816 0.89727 0.88179 0.77134 0.91353 0.89208 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.84 71.98 0.64 -1.08 16 2 C -0.07 -1.26 2.15 -10.79 -0.02 -1.28 16 3 C -0.15 -2.85 8.87 71.98 0.64 -2.21 16 4 C -0.10 -1.56 2.33 -11.54 -0.03 -1.58 16 5 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 6 C -0.14 -2.14 8.73 71.98 0.63 -1.51 16 7 C 0.52 11.35 6.43 87.66 0.56 11.92 16 8 O -0.56 -15.99 11.62 -3.04 -0.04 -16.03 16 9 N -0.70 -14.08 4.41 -426.36 -1.88 -15.96 16 10 C 0.17 3.77 0.61 5.17 0.00 3.78 16 11 C -0.11 -2.37 4.90 30.59 0.15 -2.22 16 12 C 0.08 1.43 6.87 71.98 0.49 1.93 16 13 O -0.59 -10.77 13.66 -148.98 -2.04 -12.81 16 14 C 0.01 0.34 7.11 86.41 0.61 0.96 16 15 N -0.47 -15.02 5.65 -911.81 -5.15 -20.17 16 16 C 0.02 0.71 5.28 85.56 0.45 1.16 16 17 C 0.45 21.25 7.83 87.66 0.69 21.94 16 18 O -0.61 -33.90 16.01 -3.09 -0.05 -33.95 16 19 N -0.58 -29.76 5.29 -306.98 -1.62 -31.39 16 20 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.04 13.05 21.66 0.28 -49.75 16 24 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C 0.01 0.22 6.80 86.41 0.59 0.81 16 29 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 6.43 -2.39 -0.02 0.68 16 32 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.41 5.51 -2.39 -0.01 1.40 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.96 6.43 -2.39 -0.02 0.95 16 37 H 0.06 0.94 7.46 -2.39 -0.02 0.92 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.41 6.97 7.95 -92.71 -0.74 6.23 16 40 H 0.07 1.70 7.19 -2.39 -0.02 1.68 16 41 H 0.08 1.67 8.11 -2.39 -0.02 1.65 16 42 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 43 H 0.05 0.80 7.54 -2.39 -0.02 0.78 16 44 H 0.40 3.37 9.12 -74.05 -0.68 2.69 16 45 H 0.09 2.40 8.09 -2.39 -0.02 2.38 16 46 H 0.09 2.17 7.41 -2.39 -0.02 2.15 16 47 H 0.08 2.50 7.38 -2.39 -0.02 2.48 16 48 H 0.10 3.24 8.08 -2.39 -0.02 3.22 16 49 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 50 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 51 H 0.09 2.13 7.88 -2.39 -0.02 2.11 16 52 H 0.08 2.44 7.25 -2.39 -0.02 2.42 16 Total: -1.00 -74.35 412.71 -2.97 -77.32 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: -1.20 Total: 43.53 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.68 Total: 14.24 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -8.37 Total: -117.27 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -2.12 Total: -62.79 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -74.35 -2.97 -77.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329705310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.168 kcal (2) G-P(sol) polarization free energy of solvation -74.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds