Wall clock time and date at job start Wed Apr 1 2020 00:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 359.97438 * 3 2 1 5 5 N 1.34771 * 119.99622 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99622 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47064 * 179.97438 * 6 5 3 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.52765 * 109.00862 * 233.58544 * 10 9 7 12 12 C 1.53035 * 109.38268 * 305.59133 * 11 10 9 13 13 O 1.42906 * 109.44659 * 181.25249 * 12 11 10 14 14 C 1.42901 * 113.99587 * 89.94096 * 13 12 11 15 15 C 1.53001 * 109.46746 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47362 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47488 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00335 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00002 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00138 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99907 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46891 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46849 * 119.99648 * 22 20 18 25 25 H 1.48491 * 109.47086 * 239.99756 * 22 20 18 26 26 C 1.53043 * 109.53810 * 61.23936 * 12 11 10 27 27 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.47153 * 60.00002 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47289 * 299.99918 * 1 2 3 31 31 H 1.09001 * 109.46832 * 239.99807 * 2 1 3 32 32 H 1.09002 * 109.47153 * 119.99998 * 2 1 3 33 33 H 0.96996 * 120.00772 * 359.97438 * 5 3 2 34 34 H 1.09002 * 109.47068 * 299.99729 * 6 5 3 35 35 H 1.09001 * 109.47372 * 59.99816 * 6 5 3 36 36 H 1.09000 * 109.59185 * 353.42700 * 10 9 7 37 37 H 1.09004 * 109.58365 * 113.84987 * 10 9 7 38 38 H 1.09003 * 109.56176 * 185.55325 * 11 10 9 39 39 H 1.09000 * 109.36023 * 65.50261 * 11 10 9 40 40 H 1.09007 * 109.46249 * 301.21815 * 12 11 10 41 41 H 1.08996 * 109.47256 * 299.99391 * 14 13 12 42 42 H 1.08999 * 109.47217 * 60.00162 * 14 13 12 43 43 H 1.09001 * 109.47308 * 300.00275 * 15 14 13 44 44 H 1.09001 * 109.47150 * 59.99629 * 15 14 13 45 45 H 1.09009 * 109.46754 * 299.99817 * 16 15 14 46 46 H 1.09001 * 109.47338 * 59.99686 * 16 15 14 47 47 H 0.96999 * 119.99953 * 359.97438 * 17 16 15 48 48 H 0.96995 * 119.99811 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.49283 * 178.67961 * 26 12 11 50 50 H 1.09000 * 109.52145 * 58.60445 * 26 12 11 51 51 H 1.09006 * 109.58607 * 246.15487 * 27 9 7 52 52 H 1.08997 * 109.58881 * 6.42852 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8457 3.0482 -0.0011 7 6 5.3528 3.0482 -0.0010 8 8 5.9591 1.9979 0.0000 9 7 6.0267 4.2154 -0.0009 10 6 5.3061 5.4958 -0.0073 11 6 5.8144 6.3470 -1.1695 12 6 7.3357 6.4820 -1.0729 13 8 7.8095 7.3022 -2.1429 14 6 7.8593 8.6954 -1.8290 15 6 8.3788 9.4727 -3.0402 16 6 8.4328 10.9643 -2.7040 17 7 8.9296 11.7087 -3.8639 18 6 9.0635 13.0699 -3.7978 19 1 8.8025 13.5948 -2.8908 20 6 9.5338 13.7752 -4.8970 21 7 9.8514 13.1356 -6.0026 22 14 9.7157 15.6322 -4.8071 23 1 9.2956 16.1062 -3.4639 24 1 11.1348 16.0023 -5.0405 25 1 8.8622 16.2640 -5.8449 26 6 7.9795 5.0968 -1.1687 27 6 7.4958 4.2315 -0.0013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9298 -0.0005 34 1 3.4821 3.5618 -0.8911 35 1 3.4827 3.5624 0.8888 36 1 4.2384 5.3137 -0.1290 37 1 5.4847 6.0202 0.9315 38 1 5.3578 7.3358 -1.1247 39 1 5.5508 5.8665 -2.1117 40 1 7.5999 6.9401 -0.1197 41 1 6.8595 9.0462 -1.5733 42 1 8.5275 8.8535 -0.9825 43 1 9.3786 9.1218 -3.2956 44 1 7.7110 9.3147 -3.8870 45 1 7.4330 11.3156 -2.4484 46 1 9.1008 11.1220 -1.8573 47 1 9.1637 11.2373 -4.6787 48 1 10.1804 13.6285 -6.7705 49 1 9.0641 5.1959 -1.1234 50 1 7.6961 4.6278 -2.1109 51 1 7.8569 4.6504 0.9380 52 1 7.8724 3.2152 -0.1167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329775068.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:40 Heat of formation + Delta-G solvation = -120.779029 kcal Electronic energy + Delta-G solvation = -28910.441526 eV Core-core repulsion = 24716.815985 eV Total energy + Delta-G solvation = -4193.625541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03469 -39.96470 -38.81440 -36.95291 -35.16090 -35.00130 -33.31726 -32.92269 -31.97602 -31.60841 -29.64310 -28.64014 -25.67867 -24.80576 -24.35880 -23.56806 -22.47478 -21.49527 -20.88878 -20.83509 -19.61039 -18.22137 -17.32476 -17.03545 -16.83018 -16.64116 -16.51942 -15.92244 -15.71047 -15.69956 -14.89447 -14.62999 -14.59711 -14.45076 -14.35333 -13.94414 -13.62249 -13.37738 -13.24964 -13.12544 -12.96920 -12.79630 -12.74090 -12.59692 -12.31405 -12.22052 -11.73371 -11.64442 -11.54231 -11.28773 -10.99548 -10.90406 -10.74323 -10.63681 -10.60897 -10.42519 -10.38369 -10.03056 -9.72412 -9.69816 -9.54117 -9.27311 -8.88684 -6.93370 -5.76910 -3.06169 1.95459 2.15971 2.16739 2.80022 3.43101 3.45841 3.49965 3.51182 3.78209 4.20370 4.26919 4.43472 4.53547 4.58081 4.58763 4.59704 4.70966 4.74806 4.77321 4.79914 4.96910 5.05010 5.06260 5.07904 5.22873 5.27312 5.33868 5.35791 5.41056 5.46036 5.53751 5.56548 5.58284 5.70838 5.73899 5.82067 5.83590 5.97257 5.98395 6.07640 6.25803 6.34978 6.73325 6.80938 6.84968 6.97126 7.21737 7.47888 7.69488 7.71699 8.41801 9.52898 10.10731 10.45436 11.46106 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.001399 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.090791 B =20006.552467 C =20780.230250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.540 6.540 5 N -0.722 5.722 6 C 0.099 3.901 7 C 0.514 3.486 8 O -0.539 6.539 9 N -0.607 5.607 10 C 0.105 3.895 11 C -0.160 4.160 12 C 0.090 3.910 13 O -0.379 6.379 14 C 0.068 3.932 15 C -0.125 4.125 16 C 0.157 3.843 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.132 4.132 27 C 0.115 3.885 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 -28.576 16.825 35.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.417 6.417 5 N -0.378 5.378 6 C -0.028 4.028 7 C 0.301 3.699 8 O -0.417 6.417 9 N -0.340 5.340 10 C -0.017 4.017 11 C -0.198 4.198 12 C 0.032 3.968 13 O -0.298 6.298 14 C -0.009 4.009 15 C -0.163 4.163 16 C 0.029 3.971 17 N -0.377 5.377 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.170 4.170 27 C -0.007 4.007 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.250 0.750 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.105 0.895 50 H 0.095 0.905 51 H 0.091 0.909 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.918 -28.359 16.720 35.742 hybrid contribution 0.516 0.901 -0.113 1.045 sum -13.401 -27.458 16.607 34.775 Atomic orbital electron populations 1.21542 0.92752 1.01783 1.03468 1.21623 0.98782 0.93184 1.04675 1.20866 0.81423 0.92273 0.75401 1.90725 1.55253 1.46549 1.49177 1.45808 1.07812 1.08064 1.76122 1.21109 0.90952 0.85866 1.04886 1.20486 0.89793 0.83658 0.75948 1.90693 1.69828 1.30791 1.50363 1.48095 1.07390 1.05819 1.72738 1.21775 0.96930 0.83560 0.99481 1.22393 0.97163 1.01048 0.99246 1.21977 0.92348 0.91491 0.90973 1.87959 1.86145 1.17758 1.37964 1.22543 0.99652 0.80287 0.98415 1.21672 1.02135 0.95421 0.97041 1.20512 0.96627 0.88421 0.91553 1.42344 1.78654 1.04458 1.12291 1.19282 1.36458 0.83285 0.98195 0.91086 1.24760 1.02092 0.98075 0.96081 1.69676 1.50700 1.34442 1.03311 0.86101 0.77339 0.85449 0.77214 1.20533 1.21826 1.21823 1.21984 1.01591 0.94088 0.99357 1.21650 0.78428 1.02243 0.98403 0.91871 0.91907 0.91929 0.88647 0.88697 0.74995 0.88162 0.88268 0.89078 0.90402 0.89737 0.90332 0.91947 0.93387 0.93336 0.91178 0.91184 0.96352 0.96347 0.78183 0.93521 0.89533 0.90489 0.90888 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.20 37.16 0.34 -0.37 16 2 C -0.14 -0.65 6.42 -27.88 -0.18 -0.82 16 3 C 0.51 3.99 7.83 -10.99 -0.09 3.90 16 4 O -0.54 -6.18 15.98 5.56 0.09 -6.09 16 5 N -0.72 -4.93 5.53 -61.47 -0.34 -5.27 16 6 C 0.10 0.66 4.50 -5.19 -0.02 0.64 16 7 C 0.51 4.12 7.77 -10.98 -0.09 4.03 16 8 O -0.54 -5.77 15.08 5.56 0.08 -5.69 16 9 N -0.61 -4.21 2.98 -173.06 -0.52 -4.73 16 10 C 0.11 0.56 6.31 -3.93 -0.02 0.54 16 11 C -0.16 -1.18 5.68 -26.83 -0.15 -1.33 16 12 C 0.09 0.81 2.57 -26.69 -0.07 0.74 16 13 O -0.38 -4.81 9.99 -35.23 -0.35 -5.16 16 14 C 0.07 0.88 5.75 37.16 0.21 1.09 16 15 C -0.12 -2.07 5.70 -26.73 -0.15 -2.22 16 16 C 0.16 3.16 6.26 -4.05 -0.03 3.13 16 17 N -0.73 -19.03 5.60 -59.91 -0.34 -19.36 16 18 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 22 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 C -0.13 -1.07 5.73 -26.63 -0.15 -1.22 16 27 C 0.11 0.80 6.43 -3.74 -0.02 0.78 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.41 2.50 7.44 -40.82 -0.30 2.20 16 34 H 0.10 0.65 7.68 -51.93 -0.40 0.25 16 35 H 0.10 0.58 7.95 -51.93 -0.41 0.17 16 36 H 0.09 0.37 5.94 -51.93 -0.31 0.06 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.61 7.84 -51.93 -0.41 0.20 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 41 H 0.05 0.57 7.84 -51.93 -0.41 0.16 16 42 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.10 0.79 7.00 -51.93 -0.36 0.43 16 LS Contribution 420.00 15.07 6.33 6.33 Total: -1.00 -35.51 420.00 -9.20 -44.71 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -9.20 Total: 4.26 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.66 Total: 1.37 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.47 Total: -57.21 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.18 Total: -16.93 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.51 -9.20 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329775068.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.069 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds