Wall clock time and date at job start Wed Apr 1 2020 00:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 359.97438 * 3 2 1 5 5 N 1.34771 * 119.99622 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99622 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47064 * 179.97438 * 6 5 3 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.52765 * 109.00862 * 233.58544 * 10 9 7 12 12 C 1.53035 * 109.38268 * 305.59133 * 11 10 9 13 13 O 1.42906 * 109.44659 * 181.25249 * 12 11 10 14 14 C 1.42901 * 113.99587 * 89.94096 * 13 12 11 15 15 C 1.53001 * 109.46746 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47362 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47488 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00335 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00002 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00138 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00167 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99907 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46891 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46849 * 119.99648 * 22 20 18 25 25 H 1.48491 * 109.47086 * 239.99756 * 22 20 18 26 26 C 1.53043 * 109.53810 * 61.23936 * 12 11 10 27 27 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.47153 * 60.00002 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47289 * 299.99918 * 1 2 3 31 31 H 1.09001 * 109.46832 * 239.99807 * 2 1 3 32 32 H 1.09002 * 109.47153 * 119.99998 * 2 1 3 33 33 H 0.96996 * 120.00772 * 359.97438 * 5 3 2 34 34 H 1.09002 * 109.47068 * 299.99729 * 6 5 3 35 35 H 1.09001 * 109.47372 * 59.99816 * 6 5 3 36 36 H 1.09000 * 109.59185 * 353.42700 * 10 9 7 37 37 H 1.09004 * 109.58365 * 113.84987 * 10 9 7 38 38 H 1.09003 * 109.56176 * 185.55325 * 11 10 9 39 39 H 1.09000 * 109.36023 * 65.50261 * 11 10 9 40 40 H 1.09007 * 109.46249 * 301.21815 * 12 11 10 41 41 H 1.08996 * 109.47256 * 299.99391 * 14 13 12 42 42 H 1.08999 * 109.47217 * 60.00162 * 14 13 12 43 43 H 1.09001 * 109.47308 * 300.00275 * 15 14 13 44 44 H 1.09001 * 109.47150 * 59.99629 * 15 14 13 45 45 H 1.09009 * 109.46754 * 299.99817 * 16 15 14 46 46 H 1.09001 * 109.47338 * 59.99686 * 16 15 14 47 47 H 0.96999 * 119.99953 * 359.97438 * 17 16 15 48 48 H 0.96995 * 119.99811 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.49283 * 178.67961 * 26 12 11 50 50 H 1.09000 * 109.52145 * 58.60445 * 26 12 11 51 51 H 1.09006 * 109.58607 * 246.15487 * 27 9 7 52 52 H 1.08997 * 109.58881 * 6.42852 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8457 3.0482 -0.0011 7 6 5.3528 3.0482 -0.0010 8 8 5.9591 1.9979 0.0000 9 7 6.0267 4.2154 -0.0009 10 6 5.3061 5.4958 -0.0073 11 6 5.8144 6.3470 -1.1695 12 6 7.3357 6.4820 -1.0729 13 8 7.8095 7.3022 -2.1429 14 6 7.8593 8.6954 -1.8290 15 6 8.3788 9.4727 -3.0402 16 6 8.4328 10.9643 -2.7040 17 7 8.9296 11.7087 -3.8639 18 6 9.0635 13.0699 -3.7978 19 1 8.8025 13.5948 -2.8908 20 6 9.5338 13.7752 -4.8970 21 7 9.8514 13.1356 -6.0026 22 14 9.7157 15.6322 -4.8071 23 1 9.2956 16.1062 -3.4639 24 1 11.1348 16.0023 -5.0405 25 1 8.8622 16.2640 -5.8449 26 6 7.9795 5.0968 -1.1687 27 6 7.4958 4.2315 -0.0013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9298 -0.0005 34 1 3.4821 3.5618 -0.8911 35 1 3.4827 3.5624 0.8888 36 1 4.2384 5.3137 -0.1290 37 1 5.4847 6.0202 0.9315 38 1 5.3578 7.3358 -1.1247 39 1 5.5508 5.8665 -2.1117 40 1 7.5999 6.9401 -0.1197 41 1 6.8595 9.0462 -1.5733 42 1 8.5275 8.8535 -0.9825 43 1 9.3786 9.1218 -3.2956 44 1 7.7110 9.3147 -3.8870 45 1 7.4330 11.3156 -2.4484 46 1 9.1008 11.1220 -1.8573 47 1 9.1637 11.2373 -4.6787 48 1 10.1804 13.6285 -6.7705 49 1 9.0641 5.1959 -1.1234 50 1 7.6961 4.6278 -2.1109 51 1 7.8569 4.6504 0.9380 52 1 7.8724 3.2152 -0.1167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329775068.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:38 Heat of formation + Delta-G solvation = -146.282053 kcal Electronic energy + Delta-G solvation = -28911.547420 eV Core-core repulsion = 24716.815985 eV Total energy + Delta-G solvation = -4194.731435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.64467 -40.58810 -39.61377 -37.81992 -36.82980 -35.61265 -34.34010 -33.74314 -33.12528 -32.26393 -31.29947 -29.25038 -27.02670 -25.77135 -24.87827 -24.43492 -23.89321 -22.49002 -21.94195 -21.44137 -20.21223 -19.14617 -18.77792 -17.97416 -17.61091 -17.22593 -17.20786 -16.83156 -16.58655 -16.37597 -16.27278 -15.70021 -15.42403 -15.26075 -15.12756 -15.07538 -14.91137 -14.47383 -14.38485 -13.94916 -13.82263 -13.42724 -13.38255 -13.32407 -13.13510 -12.90848 -12.88601 -12.63575 -12.49169 -12.40815 -12.28020 -12.08663 -12.02654 -12.02521 -11.81831 -11.72741 -11.48894 -11.11517 -11.01120 -10.96040 -10.40447 -10.28479 -9.85486 -9.03189 -7.96723 -5.26863 1.34055 1.47695 1.48983 1.59228 1.59264 1.61792 2.28951 2.50298 2.65926 3.23172 3.37412 3.67346 3.78823 3.79649 3.93770 3.97965 4.08961 4.11825 4.18868 4.20918 4.27181 4.28085 4.29499 4.29843 4.36940 4.42177 4.58186 4.62423 4.71104 4.73490 4.75365 4.76988 4.80582 4.81493 4.92753 5.00863 5.07018 5.11356 5.20162 5.21638 5.32743 5.33203 5.37535 5.41474 5.48636 6.16660 6.24954 6.34115 6.43714 6.87731 7.15984 7.31261 8.06594 8.29368 9.27399 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.001399 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.090791 B =20006.552467 C =20780.230250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.509 3.491 4 O -0.583 6.583 5 N -0.718 5.718 6 C 0.100 3.900 7 C 0.514 3.486 8 O -0.570 6.570 9 N -0.605 5.605 10 C 0.107 3.893 11 C -0.156 4.156 12 C 0.084 3.916 13 O -0.402 6.402 14 C 0.078 3.922 15 C -0.114 4.114 16 C 0.155 3.845 17 N -0.750 5.750 18 C -0.249 4.249 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.977 3.023 23 H -0.263 1.263 24 H -0.292 1.292 25 H -0.293 1.293 26 C -0.126 4.126 27 C 0.119 3.881 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.417 0.583 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.087 0.913 50 H 0.058 0.942 51 H 0.093 0.907 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.363 -28.796 18.947 37.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.298 3.702 4 O -0.463 6.463 5 N -0.374 5.374 6 C -0.027 4.027 7 C 0.303 3.697 8 O -0.450 6.450 9 N -0.338 5.338 10 C -0.015 4.015 11 C -0.195 4.195 12 C 0.027 3.973 13 O -0.322 6.322 14 C 0.001 3.999 15 C -0.152 4.152 16 C 0.029 3.971 17 N -0.393 5.393 18 C -0.380 4.380 19 H 0.098 0.902 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.187 1.187 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.165 4.165 27 C -0.003 4.003 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.255 0.745 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.204 0.796 48 H 0.060 0.940 49 H 0.106 0.894 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.548 -28.591 18.891 37.229 hybrid contribution 0.718 0.903 -0.748 1.375 sum -13.830 -27.687 18.143 35.875 Atomic orbital electron populations 1.21544 0.93375 1.02656 1.01980 1.21694 0.98157 0.91300 1.06650 1.21463 0.81198 0.93199 0.74331 1.90703 1.56194 1.48030 1.51333 1.45843 1.07758 1.08356 1.75398 1.21148 0.89955 0.86092 1.05509 1.20674 0.90209 0.83460 0.75389 1.90679 1.70472 1.31883 1.51934 1.48174 1.07472 1.06184 1.71943 1.21910 0.97501 0.82520 0.99548 1.22346 0.96103 1.01641 0.99391 1.22225 0.93306 0.91117 0.90692 1.87920 1.86720 1.17671 1.39881 1.22348 1.00614 0.80381 0.96555 1.21486 1.01443 0.93794 0.98514 1.20677 0.96629 0.90017 0.89811 1.42617 1.78959 1.04238 1.13507 1.19727 1.35308 0.84647 0.98346 0.90242 1.25641 1.02584 1.02814 0.95887 1.69839 1.52221 1.36146 1.04018 0.85019 0.76862 0.79789 0.77753 1.18721 1.21961 1.21980 1.21925 1.01704 0.93857 0.98993 1.21617 0.78541 1.01471 0.98697 0.93510 0.89789 0.93296 0.86710 0.86449 0.74453 0.87926 0.87150 0.87583 0.88238 0.89115 0.91939 0.90122 0.91799 0.91878 0.92401 0.92430 0.95479 0.95496 0.79578 0.93950 0.89410 0.92361 0.88898 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.20 71.98 0.66 -0.65 16 2 C -0.14 -1.03 6.42 29.85 0.19 -0.84 16 3 C 0.51 7.52 7.83 87.66 0.69 8.21 16 4 O -0.58 -13.29 15.98 -3.03 -0.05 -13.33 16 5 N -0.72 -9.11 5.53 -466.78 -2.58 -11.69 16 6 C 0.10 1.22 4.50 85.63 0.39 1.61 16 7 C 0.51 7.68 7.77 87.66 0.68 8.36 16 8 O -0.57 -11.86 15.08 -3.02 -0.05 -11.91 16 9 N -0.61 -7.40 2.98 -819.82 -2.44 -9.84 16 10 C 0.11 0.88 6.31 86.22 0.54 1.43 16 11 C -0.16 -2.02 5.68 30.53 0.17 -1.84 16 12 C 0.08 1.35 2.57 30.62 0.08 1.43 16 13 O -0.40 -9.70 9.99 -148.98 -1.49 -11.18 16 14 C 0.08 1.86 5.75 71.98 0.41 2.28 16 15 C -0.11 -3.74 5.70 30.59 0.17 -3.56 16 16 C 0.15 6.11 6.26 86.38 0.54 6.65 16 17 N -0.75 -39.09 5.60 -343.46 -1.92 -41.02 16 18 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 21 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 22 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 C -0.13 -1.93 5.73 30.66 0.18 -1.75 16 27 C 0.12 1.49 6.43 86.35 0.56 2.05 16 28 H 0.05 0.59 8.10 -2.39 -0.02 0.57 16 29 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.05 0.59 8.10 -2.39 -0.02 0.57 16 31 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.42 4.62 7.44 -92.71 -0.69 3.93 16 34 H 0.10 1.22 7.68 -2.39 -0.02 1.21 16 35 H 0.11 1.11 7.95 -2.39 -0.02 1.10 16 36 H 0.11 0.60 5.94 -2.39 -0.01 0.58 16 37 H 0.10 0.47 8.14 -2.38 -0.02 0.46 16 38 H 0.09 1.08 7.84 -2.39 -0.02 1.06 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.02 7.79 -2.38 -0.02 1.00 16 41 H 0.06 1.33 7.84 -2.39 -0.02 1.31 16 42 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 45 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 49 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 50 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.09 1.35 7.00 -2.39 -0.02 1.34 16 Total: -1.00 -77.21 420.00 -0.14 -77.35 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.49 Total: 27.44 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 6.57 Total: 6.11 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -6.66 Total: -122.68 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.58 Total: -36.43 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -77.21 -0.14 -77.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329775068.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.931 kcal (2) G-P(sol) polarization free energy of solvation -77.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds