Wall clock time and date at job start Wed Apr 1 2020 01:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99843 * 2 1 4 4 C 1.52998 * 109.46898 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47444 * 59.99871 * 4 3 2 6 6 C 1.53008 * 109.47150 * 299.99983 * 4 3 2 7 7 C 1.50698 * 109.47321 * 180.02562 * 4 3 2 8 8 O 1.21288 * 119.99595 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00363 * 179.97438 * 7 4 3 10 10 C 1.46503 * 119.99913 * 180.02562 * 9 7 4 11 11 H 1.08997 * 109.47245 * 324.99838 * 10 9 7 12 12 C 1.52996 * 109.47322 * 85.00358 * 10 9 7 13 13 C 1.53001 * 109.46742 * 205.00323 * 10 9 7 14 14 C 1.53944 * 113.73321 * 161.73191 * 13 10 9 15 15 N 1.47958 * 86.18032 * 221.91896 * 14 13 10 16 16 C 1.46900 * 110.99595 * 137.58108 * 15 14 13 17 17 C 1.50703 * 109.47051 * 90.64296 * 16 15 14 18 18 O 1.21286 * 119.99798 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99973 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00152 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00070 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00316 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99850 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00206 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47069 * 90.00077 * 24 22 20 26 26 H 1.48499 * 109.47316 * 210.00184 * 24 22 20 27 27 H 1.48505 * 109.47159 * 330.00280 * 24 22 20 28 28 C 1.47962 * 90.76460 * 24.69093 * 15 14 13 29 29 H 1.08997 * 109.47046 * 59.99924 * 1 2 3 30 30 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46983 * 300.00211 * 1 2 3 32 32 H 1.08995 * 109.47182 * 60.00308 * 3 2 1 33 33 H 1.08996 * 109.47517 * 299.99840 * 3 2 1 34 34 H 1.09000 * 109.47463 * 180.02562 * 5 4 3 35 35 H 1.08995 * 109.47596 * 299.99996 * 5 4 3 36 36 H 1.09005 * 109.47074 * 60.00203 * 5 4 3 37 37 H 1.08995 * 109.47225 * 300.00017 * 6 4 3 38 38 H 1.08995 * 109.46966 * 60.00570 * 6 4 3 39 39 H 1.09000 * 109.47171 * 179.97438 * 6 4 3 40 40 H 0.97001 * 120.00131 * 0.02562 * 9 7 4 41 41 H 1.09004 * 109.46864 * 60.04007 * 12 10 9 42 42 H 1.08995 * 109.47184 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47227 * 300.04869 * 12 10 9 44 44 H 1.09001 * 112.93783 * 293.43575 * 13 10 9 45 45 H 1.09003 * 113.75597 * 336.24358 * 14 13 10 46 46 H 1.08998 * 113.75628 * 107.60077 * 14 13 10 47 47 H 1.09001 * 109.47173 * 210.63751 * 16 15 14 48 48 H 1.08999 * 109.47586 * 330.63696 * 16 15 14 49 49 H 0.96998 * 119.99975 * 359.97438 * 19 17 16 50 50 H 0.97005 * 120.00121 * 179.97438 * 23 22 20 51 51 H 1.09003 * 113.75729 * 220.99280 * 28 15 14 52 52 H 1.08997 * 113.86326 * 89.63563 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4257 -1.2501 6 6 3.9874 0.4252 1.2483 7 6 4.1484 2.5614 0.0000 8 8 3.4355 3.5426 0.0013 9 7 5.4888 2.7023 0.0001 10 6 6.0846 4.0407 0.0013 11 1 5.4634 4.7155 -0.5876 12 6 6.1773 4.5564 1.4387 13 6 7.4863 3.9753 -0.6085 14 6 8.0273 5.3420 -1.0660 15 7 8.5274 4.6320 -2.2639 16 6 8.2861 5.4185 -3.4810 17 6 9.4749 6.3046 -3.7505 18 8 10.4291 6.2833 -3.0020 19 7 9.4779 7.1206 -4.8231 20 6 10.5592 7.9270 -5.0680 21 1 11.4088 7.9081 -4.4016 22 6 10.5624 8.7679 -6.1742 23 7 9.5288 8.7906 -6.9853 24 14 12.0360 9.8661 -6.5082 25 1 13.0082 9.1425 -7.3664 26 1 11.5867 11.1002 -7.2013 27 1 12.6847 10.2287 -5.2225 28 6 7.4968 3.5836 -2.0972 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 5.0730 0.3392 -1.2504 35 1 3.5431 -0.5701 -1.2502 36 1 3.6644 0.9668 -2.1400 37 1 3.6661 0.9659 2.1385 38 1 3.5441 -0.5706 1.2483 39 1 5.0739 0.3387 1.2477 40 1 6.0590 1.9175 -0.0006 41 1 6.7992 3.8819 2.0273 42 1 6.6202 5.5523 1.4395 43 1 5.1788 4.6021 1.8735 44 1 8.1882 3.4052 0.0002 45 1 7.2479 6.0728 -1.2820 46 1 8.8176 5.7374 -0.4280 47 1 8.1361 4.7452 -4.3249 48 1 7.3971 6.0345 -3.3453 49 1 8.7149 7.1373 -5.4218 50 1 9.5309 9.3779 -7.7574 51 1 7.8633 2.5740 -2.2830 52 1 6.5616 3.7983 -2.6143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330013524.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:13 Heat of formation + Delta-G solvation = -92.906224 kcal Electronic energy + Delta-G solvation = -30217.795567 eV Core-core repulsion = 26025.378682 eV Total energy + Delta-G solvation = -4192.416886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86749 -39.90546 -38.26586 -37.72170 -35.47444 -35.22993 -33.85137 -31.48092 -31.10019 -29.44008 -27.78357 -27.72930 -26.10116 -25.94264 -25.76817 -24.33431 -23.18860 -21.36638 -20.27694 -19.33992 -19.09461 -17.87177 -17.44322 -16.83518 -16.27589 -16.12616 -16.04590 -15.62094 -15.41971 -15.11786 -14.96256 -14.58674 -14.36325 -14.01564 -13.79297 -13.72571 -13.67199 -13.34258 -12.98589 -12.71789 -12.64151 -12.56706 -12.48327 -12.29961 -12.24439 -11.94950 -11.89406 -11.55454 -11.47491 -11.29878 -11.14921 -11.04950 -10.90432 -10.84156 -10.57742 -10.37411 -10.18591 -10.04839 -9.90117 -9.47220 -9.34318 -8.70021 -8.14430 -7.92991 -6.38770 -3.79475 2.36125 2.67645 3.19664 3.27865 3.33836 3.50737 3.90542 3.95995 4.16521 4.23389 4.34621 4.40100 4.47868 4.54506 4.75330 4.94025 4.95781 4.97386 5.04455 5.13341 5.19200 5.21182 5.21481 5.26690 5.26875 5.27119 5.40354 5.41979 5.45355 5.45836 5.51356 5.52881 5.67658 5.69808 5.73163 5.76618 5.82128 5.85620 5.94494 6.00458 6.19706 6.28581 6.30791 6.60015 6.72477 7.18466 7.22397 7.57777 7.93995 8.09194 8.65471 9.21496 9.58110 10.10635 10.79161 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.001835 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.539805 B =15257.264468 C =15816.459951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.085 3.915 4 C -0.080 4.080 5 C -0.137 4.137 6 C -0.136 4.136 7 C 0.527 3.473 8 O -0.541 6.541 9 N -0.717 5.717 10 C 0.150 3.850 11 H 0.089 0.911 12 C -0.161 4.161 13 C -0.126 4.126 14 C 0.023 3.977 15 N -0.448 5.448 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.005 3.995 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.401 0.599 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.087 0.913 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.909 -18.453 15.007 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.008 3.992 4 C -0.084 4.084 5 C -0.195 4.195 6 C -0.194 4.194 7 C 0.313 3.687 8 O -0.418 6.418 9 N -0.368 5.368 10 C 0.045 3.955 11 H 0.107 0.893 12 C -0.219 4.219 13 C -0.146 4.146 14 C -0.106 4.106 15 N -0.170 5.170 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.124 4.124 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.235 0.765 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.105 0.895 48 H 0.075 0.925 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.982 -17.952 15.264 28.473 hybrid contribution -0.596 0.817 -0.814 1.298 sum -16.577 -17.136 14.450 27.879 Atomic orbital electron populations 1.22730 0.80739 1.02697 1.00190 1.87789 1.19784 1.27716 1.95522 1.22214 0.91145 0.84226 1.01601 1.20716 0.95146 0.93330 0.99166 1.21806 1.01365 1.01090 0.95217 1.21796 1.01264 1.01090 0.95202 1.20313 0.82456 0.90551 0.75393 1.90718 1.61017 1.40554 1.49491 1.45995 1.06377 1.09354 1.75070 1.21077 0.93282 0.83874 0.97261 0.89330 1.22132 1.02232 1.01766 0.95805 1.23349 0.95439 0.99427 0.96343 1.23917 0.98724 0.94236 0.93753 1.68381 1.40012 1.07472 1.01138 1.22482 0.97524 0.97238 0.94977 1.19689 0.89020 0.84123 0.83985 1.90515 1.36624 1.69873 1.48872 1.41880 1.18990 1.36165 1.23458 1.19695 0.97230 1.16541 1.09269 0.87971 1.25253 0.98414 0.98479 0.95892 1.69615 1.29845 1.39703 1.15322 0.85859 0.80752 0.79028 0.78649 1.20427 1.20965 1.19452 1.23971 0.95202 0.98595 0.94653 0.93974 0.89545 0.94044 0.92501 0.92406 0.91952 0.90447 0.92102 0.92267 0.90446 0.92050 0.76450 0.92322 0.91161 0.92256 0.87702 0.91248 0.88768 0.89510 0.92464 0.77575 0.91934 0.89452 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.22 9.35 -35.23 -0.33 -3.55 16 3 C 0.09 0.74 4.09 37.16 0.15 0.89 16 4 C -0.08 -0.63 0.70 -155.66 -0.11 -0.73 16 5 C -0.14 -0.92 8.22 37.16 0.31 -0.62 16 6 C -0.14 -0.85 8.22 37.16 0.31 -0.54 16 7 C 0.53 5.23 6.45 -10.99 -0.07 5.16 16 8 O -0.54 -7.44 15.65 5.55 0.09 -7.35 16 9 N -0.72 -5.83 4.73 -53.81 -0.25 -6.09 16 10 C 0.15 1.43 2.29 -67.93 -0.16 1.28 16 11 H 0.09 1.04 7.48 -51.93 -0.39 0.65 16 12 C -0.16 -1.46 9.44 37.16 0.35 -1.11 16 13 C -0.13 -1.29 3.35 -89.68 -0.30 -1.60 16 14 C 0.02 0.32 7.41 -2.76 -0.02 0.30 16 15 N -0.45 -7.31 5.65 -239.71 -1.35 -8.66 16 16 C 0.01 0.18 5.28 -4.97 -0.03 0.15 16 17 C 0.45 10.82 7.83 -10.98 -0.09 10.73 16 18 O -0.58 -16.05 16.01 5.55 0.09 -15.96 16 19 N -0.57 -14.69 5.29 -10.96 -0.06 -14.75 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.00 0.06 7.38 -2.76 -0.02 0.04 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.06 0.33 7.57 -51.93 -0.39 -0.06 16 35 H 0.08 0.51 7.68 -51.93 -0.40 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.48 7.68 -51.93 -0.40 0.08 16 39 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 40 H 0.40 2.38 7.44 -40.82 -0.30 2.07 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.94 7.36 -51.93 -0.38 0.56 16 46 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.09 1.43 8.08 -51.93 -0.42 1.02 16 48 H 0.06 0.94 7.38 -51.93 -0.38 0.56 16 49 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 51 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 52 H 0.07 0.76 7.88 -51.93 -0.41 0.36 16 LS Contribution 422.65 15.07 6.37 6.37 Total: -1.00 -34.35 422.65 -7.75 -42.10 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -9.19 Total: 8.62 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 1.20 Total: 7.14 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.94 Total: -53.69 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.15 Total: -26.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.35 -7.75 -42.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330013524.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.809 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds