Wall clock time and date at job start Wed Apr 1 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99843 * 2 1 4 4 C 1.52998 * 109.46898 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47444 * 59.99871 * 4 3 2 6 6 C 1.53008 * 109.47150 * 299.99983 * 4 3 2 7 7 C 1.50698 * 109.47321 * 180.02562 * 4 3 2 8 8 O 1.21288 * 119.99595 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00363 * 179.97438 * 7 4 3 10 10 C 1.46503 * 119.99913 * 180.02562 * 9 7 4 11 11 H 1.08997 * 109.47245 * 324.99838 * 10 9 7 12 12 C 1.52996 * 109.47322 * 85.00358 * 10 9 7 13 13 C 1.53001 * 109.46742 * 205.00323 * 10 9 7 14 14 C 1.53944 * 113.73321 * 161.73191 * 13 10 9 15 15 N 1.47958 * 86.18032 * 221.91896 * 14 13 10 16 16 C 1.46900 * 110.99595 * 137.58108 * 15 14 13 17 17 C 1.50703 * 109.47051 * 90.64296 * 16 15 14 18 18 O 1.21286 * 119.99798 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99973 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00152 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00070 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00316 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99850 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00206 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47069 * 90.00077 * 24 22 20 26 26 H 1.48499 * 109.47316 * 210.00184 * 24 22 20 27 27 H 1.48505 * 109.47159 * 330.00280 * 24 22 20 28 28 C 1.47962 * 90.76460 * 24.69093 * 15 14 13 29 29 H 1.08997 * 109.47046 * 59.99924 * 1 2 3 30 30 H 1.09002 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46983 * 300.00211 * 1 2 3 32 32 H 1.08995 * 109.47182 * 60.00308 * 3 2 1 33 33 H 1.08996 * 109.47517 * 299.99840 * 3 2 1 34 34 H 1.09000 * 109.47463 * 180.02562 * 5 4 3 35 35 H 1.08995 * 109.47596 * 299.99996 * 5 4 3 36 36 H 1.09005 * 109.47074 * 60.00203 * 5 4 3 37 37 H 1.08995 * 109.47225 * 300.00017 * 6 4 3 38 38 H 1.08995 * 109.46966 * 60.00570 * 6 4 3 39 39 H 1.09000 * 109.47171 * 179.97438 * 6 4 3 40 40 H 0.97001 * 120.00131 * 0.02562 * 9 7 4 41 41 H 1.09004 * 109.46864 * 60.04007 * 12 10 9 42 42 H 1.08995 * 109.47184 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47227 * 300.04869 * 12 10 9 44 44 H 1.09001 * 112.93783 * 293.43575 * 13 10 9 45 45 H 1.09003 * 113.75597 * 336.24358 * 14 13 10 46 46 H 1.08998 * 113.75628 * 107.60077 * 14 13 10 47 47 H 1.09001 * 109.47173 * 210.63751 * 16 15 14 48 48 H 1.08999 * 109.47586 * 330.63696 * 16 15 14 49 49 H 0.96998 * 119.99975 * 359.97438 * 19 17 16 50 50 H 0.97005 * 120.00121 * 179.97438 * 23 22 20 51 51 H 1.09003 * 113.75729 * 220.99280 * 28 15 14 52 52 H 1.08997 * 113.86326 * 89.63563 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4257 -1.2501 6 6 3.9874 0.4252 1.2483 7 6 4.1484 2.5614 0.0000 8 8 3.4355 3.5426 0.0013 9 7 5.4888 2.7023 0.0001 10 6 6.0846 4.0407 0.0013 11 1 5.4634 4.7155 -0.5876 12 6 6.1773 4.5564 1.4387 13 6 7.4863 3.9753 -0.6085 14 6 8.0273 5.3420 -1.0660 15 7 8.5274 4.6320 -2.2639 16 6 8.2861 5.4185 -3.4810 17 6 9.4749 6.3046 -3.7505 18 8 10.4291 6.2833 -3.0020 19 7 9.4779 7.1206 -4.8231 20 6 10.5592 7.9270 -5.0680 21 1 11.4088 7.9081 -4.4016 22 6 10.5624 8.7679 -6.1742 23 7 9.5288 8.7906 -6.9853 24 14 12.0360 9.8661 -6.5082 25 1 13.0082 9.1425 -7.3664 26 1 11.5867 11.1002 -7.2013 27 1 12.6847 10.2287 -5.2225 28 6 7.4968 3.5836 -2.0972 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 5.0730 0.3392 -1.2504 35 1 3.5431 -0.5701 -1.2502 36 1 3.6644 0.9668 -2.1400 37 1 3.6661 0.9659 2.1385 38 1 3.5441 -0.5706 1.2483 39 1 5.0739 0.3387 1.2477 40 1 6.0590 1.9175 -0.0006 41 1 6.7992 3.8819 2.0273 42 1 6.6202 5.5523 1.4395 43 1 5.1788 4.6021 1.8735 44 1 8.1882 3.4052 0.0002 45 1 7.2479 6.0728 -1.2820 46 1 8.8176 5.7374 -0.4280 47 1 8.1361 4.7452 -4.3249 48 1 7.3971 6.0345 -3.3453 49 1 8.7149 7.1373 -5.4218 50 1 9.5309 9.3779 -7.7574 51 1 7.8633 2.5740 -2.2830 52 1 6.5616 3.7983 -2.6143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330013524.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:12 Heat of formation + Delta-G solvation = -119.750052 kcal Electronic energy + Delta-G solvation = -30218.959603 eV Core-core repulsion = 26025.378682 eV Total energy + Delta-G solvation = -4193.580922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74630 -40.95139 -39.64009 -38.84712 -36.41784 -35.92315 -35.84516 -33.31261 -32.31616 -30.60172 -28.32275 -28.23231 -27.44611 -27.05296 -26.52712 -25.73782 -24.17644 -22.31261 -21.13990 -20.99298 -20.09556 -19.86861 -18.15767 -17.86138 -17.55845 -16.91764 -16.89391 -16.73423 -16.55495 -16.22418 -16.15287 -15.86698 -15.62153 -15.37255 -14.95707 -14.81186 -14.34659 -14.19278 -14.06399 -13.97977 -13.69637 -13.51512 -13.40047 -13.27671 -13.04936 -12.99199 -12.87510 -12.75294 -12.45226 -12.43022 -12.39142 -12.14168 -12.03499 -11.91963 -11.84470 -11.68494 -11.59942 -11.49972 -10.71520 -10.66132 -10.38220 -10.14150 -10.01798 -9.62226 -8.47207 -5.96206 1.37345 1.40586 1.53687 1.59400 1.95768 2.05132 2.28086 2.77411 2.89811 3.18839 3.34666 3.42218 3.55673 3.68109 3.80066 3.89136 4.08757 4.17131 4.17724 4.21964 4.33860 4.39852 4.43945 4.47970 4.48462 4.50841 4.53112 4.61082 4.61891 4.76579 4.79057 4.79961 4.83338 4.83868 4.87796 4.93234 4.99152 5.01530 5.19698 5.31739 5.33955 5.35060 5.39433 5.43309 5.51010 5.89671 6.08271 6.13682 6.53738 6.59975 7.12365 7.22164 7.55834 8.12170 8.70304 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.001835 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.539805 B =15257.264468 C =15816.459951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.087 3.913 4 C -0.076 4.076 5 C -0.134 4.134 6 C -0.132 4.132 7 C 0.527 3.473 8 O -0.584 6.584 9 N -0.703 5.703 10 C 0.158 3.842 11 H 0.067 0.933 12 C -0.157 4.157 13 C -0.098 4.098 14 C 0.014 3.986 15 N -0.480 5.480 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.577 5.577 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.012 3.988 29 H 0.043 0.957 30 H 0.104 0.896 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.416 0.584 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.122 0.878 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.074 0.926 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.107 0.893 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 -20.098 15.235 30.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.010 3.990 4 C -0.079 4.079 5 C -0.191 4.191 6 C -0.189 4.189 7 C 0.314 3.686 8 O -0.464 6.464 9 N -0.354 5.354 10 C 0.052 3.948 11 H 0.085 0.915 12 C -0.215 4.215 13 C -0.117 4.117 14 C -0.116 4.116 15 N -0.203 5.203 16 C -0.108 4.108 17 C 0.230 3.770 18 O -0.503 6.503 19 N -0.215 5.215 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.116 4.116 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.140 0.860 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.123 0.877 48 H 0.092 0.908 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.125 0.875 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.065 -19.639 15.485 29.725 hybrid contribution -0.621 1.301 -0.856 1.677 sum -16.687 -18.338 14.629 28.787 Atomic orbital electron populations 1.22918 0.79632 1.03984 1.00499 1.87769 1.21061 1.27218 1.95518 1.22130 0.92092 0.84357 1.00419 1.20702 0.94309 0.92255 1.00677 1.21802 1.02615 1.00729 0.93978 1.21789 1.02553 1.00694 0.93883 1.20692 0.82605 0.90861 0.74437 1.90705 1.62051 1.42087 1.51529 1.45831 1.06059 1.09380 1.74154 1.20862 0.92394 0.84252 0.97243 0.91466 1.22089 1.01831 1.02169 0.95448 1.23137 0.95762 0.96814 0.95983 1.23954 0.98364 0.96103 0.93144 1.68351 1.42552 1.08710 1.00689 1.22347 0.94733 0.96891 0.96878 1.20795 0.90166 0.83601 0.82483 1.90476 1.38812 1.71024 1.49960 1.41968 1.18646 1.36574 1.24279 1.19664 0.97842 1.18696 1.10117 0.90383 1.26057 1.01129 0.99128 0.95080 1.69678 1.31058 1.40050 1.15485 0.84913 0.77466 0.77525 0.78337 1.19567 1.19501 1.19782 1.24060 0.94232 0.98101 0.95215 0.93825 0.87782 0.93629 0.93555 0.93829 0.89996 0.90131 0.93165 0.92922 0.90147 0.90038 0.74680 0.90580 0.91359 0.93470 0.85990 0.91267 0.90463 0.87655 0.90783 0.77136 0.91321 0.87482 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.18 9.35 -148.98 -1.39 -7.58 16 3 C 0.09 1.50 4.09 71.98 0.29 1.79 16 4 C -0.08 -1.08 0.70 -52.93 -0.04 -1.11 16 5 C -0.13 -1.51 8.22 71.98 0.59 -0.92 16 6 C -0.13 -1.35 8.22 71.98 0.59 -0.76 16 7 C 0.53 9.84 6.45 87.66 0.56 10.41 16 8 O -0.58 -16.10 15.65 -3.05 -0.05 -16.15 16 9 N -0.70 -9.84 4.73 -442.53 -2.09 -11.93 16 10 C 0.16 2.75 2.29 44.99 0.10 2.86 16 11 H 0.07 1.53 7.48 -2.39 -0.02 1.51 16 12 C -0.16 -2.62 9.44 71.98 0.68 -1.94 16 13 C -0.10 -1.79 3.35 -10.14 -0.03 -1.82 16 14 C 0.01 0.38 7.41 86.41 0.64 1.02 16 15 N -0.48 -15.08 5.65 -912.32 -5.15 -20.24 16 16 C 0.02 0.82 5.28 85.56 0.45 1.28 16 17 C 0.44 21.75 7.83 87.66 0.69 22.44 16 18 O -0.62 -35.31 16.01 -3.05 -0.05 -35.36 16 19 N -0.58 -30.46 5.29 -306.99 -1.62 -32.09 16 20 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.59 13.05 21.66 0.28 -50.31 16 24 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.01 0.25 7.38 86.41 0.64 0.89 16 29 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 34 H 0.08 0.59 7.57 -2.39 -0.02 0.57 16 35 H 0.08 0.89 7.68 -2.39 -0.02 0.87 16 36 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.81 7.68 -2.39 -0.02 0.79 16 39 H 0.08 0.50 7.56 -2.39 -0.02 0.48 16 40 H 0.42 3.43 7.44 -92.71 -0.69 2.74 16 41 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 1.86 7.36 -2.39 -0.02 1.85 16 46 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.11 3.31 8.08 -2.39 -0.02 3.29 16 48 H 0.07 2.36 7.38 -2.39 -0.02 2.34 16 49 H 0.40 19.82 7.90 -92.71 -0.73 19.09 16 50 H 0.28 14.23 8.31 -92.70 -0.77 13.46 16 51 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 52 H 0.07 1.47 7.88 -2.39 -0.02 1.45 16 Total: -1.00 -76.10 422.65 -0.86 -76.96 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.51 Total: 34.27 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 7.70 Total: 16.77 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -8.59 Total: -114.56 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -1.49 Total: -59.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -76.10 -0.86 -76.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330013524.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.791 kcal (2) G-P(sol) polarization free energy of solvation -76.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds