Wall clock time and date at job start Wed Apr 1 2020 00:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47241 * 2 1 4 4 O 1.42903 * 109.47014 * 179.97438 * 3 2 1 5 5 C 1.42905 * 113.99721 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.46808 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00306 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00030 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.63336 * 180.02562 * 8 6 5 10 10 C 1.53191 * 108.89109 * 233.68039 * 9 8 6 11 11 C 1.53035 * 109.31327 * 305.29292 * 10 9 8 12 12 N 1.46907 * 109.45982 * 181.39007 * 11 10 9 13 13 C 1.46905 * 110.99745 * 298.94938 * 12 11 10 14 14 C 1.46899 * 110.99871 * 174.99942 * 12 11 10 15 15 C 1.50699 * 109.47187 * 189.99640 * 14 12 11 16 16 O 1.21294 * 119.99794 * 359.97438 * 15 14 12 17 17 N 1.34773 * 120.00369 * 179.97438 * 15 14 12 18 18 C 1.37094 * 120.00169 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00107 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00200 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00137 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99840 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47205 * 89.99917 * 22 20 18 24 24 H 1.48505 * 109.47070 * 209.99740 * 22 20 18 25 25 H 1.48500 * 109.47281 * 329.99639 * 22 20 18 26 26 C 1.53038 * 109.54175 * 61.36680 * 11 10 9 27 27 C 1.47207 * 120.81118 * 0.14238 * 8 6 5 28 28 H 1.09000 * 109.47099 * 59.99376 * 1 2 3 29 29 H 1.08988 * 109.47289 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46636 * 299.99837 * 1 2 3 31 31 H 1.09002 * 109.47128 * 240.00957 * 2 1 3 32 32 H 1.08997 * 109.47807 * 120.00422 * 2 1 3 33 33 H 1.09011 * 109.46794 * 60.00631 * 3 2 1 34 34 H 1.09000 * 109.47583 * 300.00327 * 3 2 1 35 35 H 1.08992 * 109.47241 * 60.00227 * 5 4 3 36 36 H 1.09000 * 109.47072 * 299.99682 * 5 4 3 37 37 H 1.09002 * 109.58861 * 113.82042 * 9 8 6 38 38 H 1.08996 * 109.58519 * 353.53933 * 9 8 6 39 39 H 1.09003 * 109.49975 * 65.24379 * 10 9 8 40 40 H 1.09000 * 109.49553 * 185.30642 * 10 9 8 41 41 H 1.09004 * 109.45942 * 301.34050 * 11 10 9 42 42 H 1.09000 * 109.46654 * 60.00417 * 13 12 11 43 43 H 1.08993 * 109.47225 * 180.02562 * 13 12 11 44 44 H 1.08994 * 109.46916 * 300.00191 * 13 12 11 45 45 H 1.08999 * 109.47176 * 309.99574 * 14 12 11 46 46 H 1.09003 * 109.47427 * 70.00208 * 14 12 11 47 47 H 0.97002 * 119.99675 * 0.02562 * 17 15 14 48 48 H 0.97004 * 120.00010 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.49557 * 58.58503 * 26 11 10 50 50 H 1.08996 * 109.50003 * 178.68400 * 26 11 10 51 51 H 1.08996 * 109.53610 * 6.53286 * 27 8 6 52 52 H 1.09002 * 109.68003 * 246.22753 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0503 2.7480 0.0012 6 6 5.5526 2.6289 0.0012 7 8 6.0742 1.5340 0.0012 8 7 6.3166 3.7392 0.0012 9 6 7.7824 3.6394 0.0006 10 6 8.3361 4.4618 1.1685 11 6 7.8066 5.8945 1.0744 12 7 8.3621 6.6947 2.1741 13 6 7.9588 6.1500 3.4774 14 6 7.9704 8.1050 2.0490 15 6 8.7485 8.9323 3.0396 16 8 9.5501 8.3993 3.7775 17 7 8.5537 10.2642 3.1055 18 6 9.2611 11.0167 4.0071 19 1 9.9749 10.5422 4.6642 20 6 9.0607 12.3900 4.0747 21 7 9.7385 13.1112 4.9392 22 14 7.8267 13.2108 2.9376 23 1 6.4925 13.2344 3.5893 24 1 8.2637 14.6015 2.6541 25 1 7.7429 12.4493 1.6655 26 6 6.2795 5.8834 1.1728 27 6 5.7024 5.0771 0.0044 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0275 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9565 -0.8899 35 1 3.7284 3.2886 0.8912 36 1 3.7291 3.2891 -0.8887 37 1 8.1749 4.0286 -0.9389 38 1 8.0776 2.5965 0.1158 39 1 8.0162 4.0169 2.1107 40 1 9.4251 4.4720 1.1222 41 1 8.1060 6.3305 0.1212 42 1 8.3222 5.1267 3.5716 43 1 8.3831 6.7613 4.2738 44 1 6.8716 6.1580 3.5538 45 1 8.1836 8.4530 1.0382 46 1 6.9039 8.2052 2.2504 47 1 7.9123 10.6903 2.5156 48 1 9.5988 14.0699 4.9862 49 1 5.9789 5.4251 2.1150 50 1 5.9046 6.9060 1.1292 51 1 4.6231 4.9824 0.1234 52 1 5.9234 5.5847 -0.9346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331001910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:05 Heat of formation + Delta-G solvation = -102.444151 kcal Electronic energy + Delta-G solvation = -30127.690060 eV Core-core repulsion = 25934.859578 eV Total energy + Delta-G solvation = -4192.830481 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68440 -39.26591 -38.32949 -37.67429 -35.75166 -34.14214 -33.95277 -32.13111 -31.68267 -31.21077 -28.87803 -28.00594 -26.32569 -25.77817 -24.52183 -23.65278 -22.71177 -22.01870 -20.47445 -19.35218 -19.11255 -18.24900 -17.80641 -16.98622 -16.87759 -16.42184 -15.97016 -15.66505 -15.23185 -15.03647 -14.91669 -14.83174 -14.58803 -14.26401 -14.05225 -13.97441 -13.54135 -13.34016 -13.16154 -12.89425 -12.58059 -12.55786 -12.51336 -12.47037 -12.36025 -12.18557 -11.86073 -11.60934 -11.40289 -11.38491 -11.34745 -11.29811 -11.06586 -10.94100 -10.62696 -10.53886 -10.15298 -9.99738 -9.99304 -9.55750 -9.01164 -8.59110 -8.20147 -7.94070 -6.32973 -3.84421 2.27233 2.33761 2.99466 3.03428 3.12407 3.34991 3.71534 3.84918 4.07812 4.11904 4.35109 4.46888 4.53566 4.61654 4.65033 4.66541 4.71671 4.78345 4.83771 4.91554 4.95801 4.99632 5.00885 5.13912 5.16940 5.23131 5.24696 5.36040 5.41188 5.53047 5.53355 5.58803 5.63656 5.65710 5.71140 5.75068 5.77005 5.85733 5.91368 5.98361 6.08559 6.22458 6.50501 6.61737 7.02114 7.14670 7.28262 7.56673 7.85616 8.12955 8.58363 8.93643 9.40531 9.81790 10.80180 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.001908 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.661311 B =14671.184611 C =15563.629709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.046 3.954 6 C 0.517 3.483 7 O -0.521 6.521 8 N -0.612 5.612 9 C 0.114 3.886 10 C -0.126 4.126 11 C 0.085 3.915 12 N -0.510 5.510 13 C 0.016 3.984 14 C 0.042 3.958 15 C 0.452 3.548 16 O -0.558 6.558 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.175 4.175 27 C 0.112 3.888 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.228 -18.910 -14.325 29.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.034 4.034 6 C 0.304 3.696 7 O -0.395 6.395 8 N -0.348 5.348 9 C -0.008 4.008 10 C -0.164 4.164 11 C -0.024 4.024 12 N -0.232 5.232 13 C -0.131 4.131 14 C -0.089 4.089 15 C 0.238 3.762 16 O -0.440 6.440 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.215 4.215 27 C -0.012 4.012 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.036 0.964 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.711 -19.853 -13.737 29.362 hybrid contribution -2.086 1.466 -0.778 2.665 sum -18.797 -18.388 -14.515 30.035 Atomic orbital electron populations 1.21698 0.94587 1.02394 1.02031 1.21452 0.95659 0.95314 1.03711 1.22656 0.80353 0.98419 1.00301 1.88007 1.19673 1.25214 1.95424 1.22226 0.91803 0.86938 1.02427 1.20188 0.88610 0.84167 0.76623 1.90728 1.74422 1.26107 1.48281 1.48159 1.07141 1.05655 1.73806 1.21649 0.78133 1.02343 0.98665 1.21988 1.01953 0.93907 0.98576 1.21778 0.90736 0.94138 0.95763 1.61823 1.58467 1.00517 1.02347 1.22617 0.97200 1.01063 0.92261 1.21907 0.97505 0.89239 1.00293 1.19654 0.86880 0.82481 0.87203 1.90534 1.37723 1.70948 1.44792 1.42211 1.38749 1.06621 1.35527 1.19427 1.20265 0.89569 1.14069 0.86279 1.25036 0.97764 0.96056 0.97297 1.69623 1.40594 1.06937 1.34983 0.86678 0.81815 0.80140 0.80773 1.19708 1.20180 1.19507 1.22714 0.98798 1.00843 0.99126 1.21782 0.97553 0.82506 0.99349 0.92517 0.91889 0.92464 0.90963 0.90913 0.93089 0.93132 0.90267 0.90328 0.91117 0.88689 0.91146 0.89307 0.89788 0.91828 0.88641 0.96438 0.89354 0.93313 0.79790 0.91623 0.90728 0.90170 0.90128 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.80 6.30 -26.73 -0.17 -0.96 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 O -0.36 -3.83 9.88 -55.14 -0.54 -4.37 16 5 C 0.05 0.38 4.77 36.00 0.17 0.55 16 6 C 0.52 5.79 7.78 -10.99 -0.09 5.70 16 7 O -0.52 -8.10 15.91 -14.36 -0.23 -8.33 16 8 N -0.61 -5.59 2.98 -172.52 -0.51 -6.11 16 9 C 0.11 1.07 6.42 -3.71 -0.02 1.05 16 10 C -0.13 -1.28 5.11 -26.61 -0.14 -1.42 16 11 C 0.09 0.90 2.19 -67.67 -0.15 0.75 16 12 N -0.51 -7.51 4.49 -236.28 -1.06 -8.57 16 13 C 0.02 0.24 8.46 60.07 0.51 0.75 16 14 C 0.04 0.65 4.89 -4.98 -0.02 0.63 16 15 C 0.45 9.91 7.47 -10.99 -0.08 9.83 16 16 O -0.56 -14.53 13.91 5.55 0.08 -14.46 16 17 N -0.59 -13.68 5.09 -10.97 -0.06 -13.74 16 18 C -0.30 -8.46 10.16 -14.93 -0.15 -8.62 16 19 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.46 13.96 55.50 0.77 -24.68 16 22 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 26 C -0.17 -1.49 4.66 -26.59 -0.12 -1.61 16 27 C 0.11 0.74 6.35 -3.53 -0.02 0.72 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.25 8.14 -51.94 -0.42 -0.17 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 36 H 0.08 0.44 7.95 -51.93 -0.41 0.03 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.03 7.00 -51.93 -0.36 0.66 16 39 H 0.07 0.79 6.50 -51.93 -0.34 0.45 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 42 H 0.06 0.87 6.36 -51.93 -0.33 0.54 16 43 H 0.10 1.80 5.82 -51.93 -0.30 1.50 16 44 H 0.02 0.23 6.31 -51.93 -0.33 -0.10 16 45 H 0.09 1.20 8.00 -51.93 -0.42 0.78 16 46 H 0.05 0.66 6.90 -51.93 -0.36 0.30 16 47 H 0.37 7.45 5.76 -40.82 -0.24 7.21 16 48 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 49 H 0.07 0.71 6.47 -51.93 -0.34 0.37 16 50 H 0.08 0.65 6.69 -51.93 -0.35 0.30 16 51 H 0.08 0.37 5.97 -51.93 -0.31 0.06 16 52 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -35.40 403.19 -8.66 -44.06 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -8.68 Total: 7.20 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 0.21 Total: 8.71 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.86 Total: -53.10 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.70 Total: -27.16 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.40 -8.66 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331001910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.387 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds