Wall clock time and date at job start Wed Apr 1 2020 01:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47299 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00376 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99633 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00115 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.46958 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46958 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34767 * 119.99942 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64894 * 359.69432 * 13 11 10 15 15 C 1.55132 * 104.72154 * 155.82032 * 14 13 11 16 16 C 1.55154 * 101.48912 * 37.29523 * 15 14 13 17 17 H 1.08991 * 110.72073 * 82.69501 * 16 15 14 18 18 N 1.46500 * 110.71885 * 205.97385 * 16 15 14 19 19 C 1.36937 * 119.99528 * 268.51859 * 18 16 15 20 20 H 1.07995 * 120.00307 * 0.02562 * 19 18 16 21 21 C 1.38820 * 119.99840 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99799 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00061 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47417 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47389 * 120.00157 * 23 21 19 26 26 H 1.48502 * 109.47455 * 240.00292 * 23 21 19 27 27 C 1.47025 * 125.65096 * 180.02562 * 13 11 10 28 28 H 1.09007 * 109.87944 * 61.60279 * 27 13 11 29 29 C 1.53002 * 109.88160 * 300.59747 * 27 13 11 30 30 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 32 32 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 33 33 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 34 34 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 35 35 H 1.09001 * 109.47194 * 299.99575 * 4 3 2 36 36 H 1.08992 * 109.47399 * 59.99748 * 4 3 2 37 37 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 38 38 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 39 39 H 0.97003 * 119.99983 * 359.97438 * 6 5 4 40 40 H 1.08998 * 109.47176 * 300.00647 * 9 7 6 41 41 H 1.09002 * 109.46793 * 60.00480 * 9 7 6 42 42 H 1.09001 * 109.47142 * 300.00227 * 10 9 7 43 43 H 1.09002 * 109.47097 * 60.00192 * 10 9 7 44 44 H 1.09004 * 110.36677 * 274.74429 * 14 13 11 45 45 H 1.08994 * 110.36674 * 37.06891 * 14 13 11 46 46 H 1.09003 * 111.18924 * 279.18785 * 15 14 13 47 47 H 1.08998 * 110.90595 * 155.27869 * 15 14 13 48 48 H 0.97004 * 120.00025 * 88.52062 * 18 16 15 49 49 H 0.97001 * 120.00270 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.47166 * 61.44686 * 29 27 13 51 51 H 1.08994 * 109.46946 * 181.45115 * 29 27 13 52 52 H 1.09005 * 109.46821 * 301.45257 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6181 2.4669 0.0000 7 6 6.3820 3.5772 0.0000 8 8 5.8604 4.6721 0.0005 9 6 7.8843 3.4583 0.0006 10 6 8.5066 4.8560 -0.0002 11 6 10.0089 4.7371 0.0010 12 8 10.5304 3.6422 0.0019 13 7 10.7727 5.8474 0.0011 14 6 10.2728 7.2343 -0.0062 15 6 11.4235 8.0715 0.6114 16 6 12.6720 7.3583 0.0282 17 1 12.8848 7.7158 -0.9792 18 7 13.8321 7.5466 0.9027 19 6 14.6780 8.6042 0.6996 20 1 14.4896 9.2996 -0.1049 21 6 15.7771 8.7830 1.5285 22 7 16.0064 7.9357 2.5093 23 14 16.9314 10.2251 1.2511 24 1 16.4565 11.0236 0.0925 25 1 16.9553 11.0806 2.4647 26 1 18.2998 9.7182 0.9758 27 6 12.2427 5.8762 0.0017 28 1 12.6232 5.3959 -0.8998 29 6 12.7768 5.1544 1.2406 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8574 0.6437 0.8892 36 1 3.8566 0.6440 -0.8908 37 1 3.8357 3.1239 -0.8896 38 1 3.8363 3.1229 0.8904 39 1 6.0353 1.5912 0.0000 40 1 8.2056 2.9175 0.8907 41 1 8.2062 2.9172 -0.8892 42 1 8.1852 5.3963 -0.8906 43 1 8.1846 5.3976 0.8893 44 1 10.0699 7.5590 -1.0268 45 1 9.3739 7.3167 0.6048 46 1 11.4130 8.0130 1.6998 47 1 11.3736 9.1076 0.2769 48 1 14.0011 6.9222 1.6255 49 1 16.7742 8.0608 3.0887 50 1 12.4588 4.1120 1.2191 51 1 13.8656 5.2021 1.2476 52 1 12.3861 5.6350 2.1376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331928462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:00 Heat of formation + Delta-G solvation = -111.600357 kcal Electronic energy + Delta-G solvation = -29124.851826 eV Core-core repulsion = 24931.624302 eV Total energy + Delta-G solvation = -4193.227524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.32330 -39.71964 -38.52860 -37.53149 -35.85092 -34.17512 -33.15765 -32.29424 -31.49158 -30.64375 -28.99540 -27.73204 -26.20399 -25.18478 -24.64635 -23.30405 -22.42479 -22.18299 -20.62108 -19.46850 -18.58915 -17.74278 -17.40584 -17.14115 -16.92977 -16.40754 -16.28442 -15.90098 -15.59251 -15.34228 -15.12139 -14.95975 -14.53701 -14.20218 -13.81761 -13.56048 -13.32074 -13.20772 -12.95176 -12.62517 -12.50342 -12.43067 -12.38039 -12.15443 -11.95453 -11.73861 -11.67739 -11.65362 -11.52167 -11.35344 -11.17881 -10.96736 -10.81910 -10.44442 -10.25135 -10.18864 -10.14457 -9.97591 -9.73462 -9.47912 -9.47665 -8.95631 -8.36969 -7.02695 -5.82191 -3.11837 2.36617 2.61141 2.81302 3.17584 3.37346 3.40825 3.46894 3.48861 4.31009 4.33512 4.49192 4.53223 4.55190 4.73715 4.78164 4.80590 4.87548 4.89168 4.90095 4.95474 5.07853 5.13340 5.15640 5.29701 5.37838 5.46130 5.50088 5.54709 5.57142 5.61585 5.67000 5.69104 5.77226 5.85479 6.02455 6.07869 6.12846 6.24777 6.34887 6.56007 6.57548 6.58776 6.73280 6.84991 6.99981 7.10316 7.66569 7.79975 7.89911 8.34844 8.37335 9.48089 10.03258 10.38308 11.40331 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.044023 B = 0.001433 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.877980 B =19528.671366 C =19836.154720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.734 5.734 7 C 0.515 3.485 8 O -0.540 6.540 9 C -0.124 4.124 10 C -0.120 4.120 11 C 0.526 3.474 12 O -0.549 6.549 13 N -0.608 5.608 14 C 0.096 3.904 15 C -0.154 4.154 16 C 0.173 3.827 17 H 0.066 0.934 18 N -0.716 5.716 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.126 3.874 28 H 0.070 0.930 29 C -0.157 4.157 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.391 0.609 49 H 0.256 0.744 50 H 0.059 0.941 51 H 0.079 0.921 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.636 -13.238 -5.878 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.387 5.387 7 C 0.303 3.697 8 O -0.417 6.417 9 C -0.164 4.164 10 C -0.161 4.161 11 C 0.315 3.685 12 O -0.428 6.428 13 N -0.342 5.342 14 C -0.027 4.027 15 C -0.196 4.196 16 C 0.061 3.939 17 H 0.083 0.917 18 N -0.359 5.359 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.023 3.977 28 H 0.088 0.912 29 C -0.215 4.215 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.229 0.771 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.097 0.903 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.541 -13.099 -5.922 31.957 hybrid contribution 0.566 0.515 0.183 0.786 sum -27.976 -12.585 -5.739 31.208 Atomic orbital electron populations 1.22764 0.80608 1.02966 1.00165 1.87861 1.20051 1.27809 1.95484 1.22380 0.93224 0.84925 1.00800 1.21683 0.94006 0.96959 1.04327 1.21159 0.79926 0.96360 1.02763 1.45961 1.06628 1.09501 1.76564 1.20811 0.89816 0.83938 0.75178 1.90715 1.75318 1.26564 1.49100 1.21370 0.90001 0.98967 1.06062 1.21333 0.91434 0.97638 1.05646 1.20184 0.88820 0.83205 0.76340 1.90671 1.75105 1.25994 1.50984 1.48613 1.07544 1.05981 1.72032 1.22450 0.98215 0.81378 1.00658 1.23599 0.95459 0.99077 1.01416 1.21186 0.87750 0.89924 0.95043 0.91653 1.42653 1.25913 1.32045 1.35311 1.19307 1.03447 1.02985 1.11815 0.90988 1.24750 0.98872 0.98986 0.98051 1.69669 1.30366 1.37696 1.20126 0.86112 0.80876 0.81849 0.77284 1.20501 1.21865 1.21834 1.21885 0.78329 0.98562 0.98945 0.91196 1.21988 1.02412 1.00142 0.97004 0.89462 0.93905 0.93910 0.92817 0.92842 0.90201 0.90214 0.91227 0.91213 0.76170 0.87899 0.87955 0.88386 0.88325 0.91553 0.91152 0.90694 0.90602 0.77138 0.93433 0.92174 0.90253 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.77 10.70 -35.23 -0.38 -3.14 16 3 C 0.06 0.33 5.94 37.16 0.22 0.55 16 4 C -0.13 -0.63 5.70 -26.73 -0.15 -0.79 16 5 C 0.12 0.75 5.67 -4.04 -0.02 0.73 16 6 N -0.73 -5.00 5.56 -60.29 -0.33 -5.34 16 7 C 0.52 5.03 7.83 -10.98 -0.09 4.95 16 8 O -0.54 -7.18 15.98 5.56 0.09 -7.09 16 9 C -0.12 -1.16 4.99 -27.88 -0.14 -1.30 16 10 C -0.12 -1.35 3.99 -27.88 -0.11 -1.46 16 11 C 0.53 7.75 7.63 -10.99 -0.08 7.67 16 12 O -0.55 -9.59 14.87 5.56 0.08 -9.51 16 13 N -0.61 -9.28 3.08 -162.87 -0.50 -9.79 16 14 C 0.10 1.27 6.70 -2.41 -0.02 1.26 16 15 C -0.15 -2.52 6.78 -24.46 -0.17 -2.68 16 16 C 0.17 3.32 3.48 -66.10 -0.23 3.09 16 17 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 18 N -0.72 -17.27 4.94 -51.66 -0.26 -17.52 16 19 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 23 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 C 0.13 2.25 3.47 -66.95 -0.23 2.01 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 C -0.16 -2.97 7.93 37.16 0.29 -2.67 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.40 1.79 8.47 -40.82 -0.35 1.44 16 40 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 43 H 0.10 1.09 7.81 -51.93 -0.41 0.69 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.39 9.98 5.08 -40.82 -0.21 9.78 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.06 1.12 6.73 -51.93 -0.35 0.78 16 51 H 0.08 1.64 6.82 -51.93 -0.35 1.28 16 52 H 0.05 1.06 8.01 -51.93 -0.42 0.65 16 LS Contribution 420.43 15.07 6.34 6.34 Total: -1.00 -33.92 420.43 -8.31 -42.23 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -9.19 Total: 8.20 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 0.14 Total: 5.52 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.37 Total: -59.43 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.21 Total: -19.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.92 -8.31 -42.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331928462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.374 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds