Wall clock time and date at job start Wed Apr 1 2020 01:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47299 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00376 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99633 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00115 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.46958 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46958 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34767 * 119.99942 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64894 * 359.69432 * 13 11 10 15 15 C 1.55132 * 104.72154 * 155.82032 * 14 13 11 16 16 C 1.55154 * 101.48912 * 37.29523 * 15 14 13 17 17 H 1.08991 * 110.72073 * 82.69501 * 16 15 14 18 18 N 1.46500 * 110.71885 * 205.97385 * 16 15 14 19 19 C 1.36937 * 119.99528 * 268.51859 * 18 16 15 20 20 H 1.07995 * 120.00307 * 0.02562 * 19 18 16 21 21 C 1.38820 * 119.99840 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99799 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00061 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47417 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47389 * 120.00157 * 23 21 19 26 26 H 1.48502 * 109.47455 * 240.00292 * 23 21 19 27 27 C 1.47025 * 125.65096 * 180.02562 * 13 11 10 28 28 H 1.09007 * 109.87944 * 61.60279 * 27 13 11 29 29 C 1.53002 * 109.88160 * 300.59747 * 27 13 11 30 30 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 32 32 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 33 33 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 34 34 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 35 35 H 1.09001 * 109.47194 * 299.99575 * 4 3 2 36 36 H 1.08992 * 109.47399 * 59.99748 * 4 3 2 37 37 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 38 38 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 39 39 H 0.97003 * 119.99983 * 359.97438 * 6 5 4 40 40 H 1.08998 * 109.47176 * 300.00647 * 9 7 6 41 41 H 1.09002 * 109.46793 * 60.00480 * 9 7 6 42 42 H 1.09001 * 109.47142 * 300.00227 * 10 9 7 43 43 H 1.09002 * 109.47097 * 60.00192 * 10 9 7 44 44 H 1.09004 * 110.36677 * 274.74429 * 14 13 11 45 45 H 1.08994 * 110.36674 * 37.06891 * 14 13 11 46 46 H 1.09003 * 111.18924 * 279.18785 * 15 14 13 47 47 H 1.08998 * 110.90595 * 155.27869 * 15 14 13 48 48 H 0.97004 * 120.00025 * 88.52062 * 18 16 15 49 49 H 0.97001 * 120.00270 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.47166 * 61.44686 * 29 27 13 51 51 H 1.08994 * 109.46946 * 181.45115 * 29 27 13 52 52 H 1.09005 * 109.46821 * 301.45257 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 0.0000 6 7 5.6181 2.4669 0.0000 7 6 6.3820 3.5772 0.0000 8 8 5.8604 4.6721 0.0005 9 6 7.8843 3.4583 0.0006 10 6 8.5066 4.8560 -0.0002 11 6 10.0089 4.7371 0.0010 12 8 10.5304 3.6422 0.0019 13 7 10.7727 5.8474 0.0011 14 6 10.2728 7.2343 -0.0062 15 6 11.4235 8.0715 0.6114 16 6 12.6720 7.3583 0.0282 17 1 12.8848 7.7158 -0.9792 18 7 13.8321 7.5466 0.9027 19 6 14.6780 8.6042 0.6996 20 1 14.4896 9.2996 -0.1049 21 6 15.7771 8.7830 1.5285 22 7 16.0064 7.9357 2.5093 23 14 16.9314 10.2251 1.2511 24 1 16.4565 11.0236 0.0925 25 1 16.9553 11.0806 2.4647 26 1 18.2998 9.7182 0.9758 27 6 12.2427 5.8762 0.0017 28 1 12.6232 5.3959 -0.8998 29 6 12.7768 5.1544 1.2406 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8574 0.6437 0.8892 36 1 3.8566 0.6440 -0.8908 37 1 3.8357 3.1239 -0.8896 38 1 3.8363 3.1229 0.8904 39 1 6.0353 1.5912 0.0000 40 1 8.2056 2.9175 0.8907 41 1 8.2062 2.9172 -0.8892 42 1 8.1852 5.3963 -0.8906 43 1 8.1846 5.3976 0.8893 44 1 10.0699 7.5590 -1.0268 45 1 9.3739 7.3167 0.6048 46 1 11.4130 8.0130 1.6998 47 1 11.3736 9.1076 0.2769 48 1 14.0011 6.9222 1.6255 49 1 16.7742 8.0608 3.0887 50 1 12.4588 4.1120 1.2191 51 1 13.8656 5.2021 1.2476 52 1 12.3861 5.6350 2.1376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331928462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:59 Heat of formation + Delta-G solvation = -135.617702 kcal Electronic energy + Delta-G solvation = -29125.893296 eV Core-core repulsion = 24931.624302 eV Total energy + Delta-G solvation = -4194.268994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40156 -40.66502 -38.99823 -38.83860 -36.46255 -35.90816 -34.12240 -33.34688 -32.72428 -32.02084 -30.61756 -28.24191 -26.91546 -26.75728 -25.56604 -24.89793 -23.56723 -22.69604 -21.44293 -20.77453 -19.83688 -19.44873 -18.57376 -17.65172 -17.45152 -17.38768 -17.18070 -16.74973 -16.55708 -16.43432 -16.23532 -15.72078 -15.71388 -15.55738 -15.14070 -14.73889 -14.58516 -14.27808 -13.95569 -13.79847 -13.59250 -13.34653 -13.19095 -13.04997 -12.97913 -12.89603 -12.86943 -12.84722 -12.71687 -12.51839 -12.17580 -12.06768 -12.05394 -12.03447 -12.00092 -11.59389 -11.51239 -10.95037 -10.92099 -10.76942 -10.64060 -10.11077 -9.63414 -9.00091 -7.93012 -5.21786 1.50121 1.50514 1.60347 1.61990 1.65111 1.84651 2.22445 2.58739 2.89993 3.37016 3.48408 3.73484 3.80395 3.92713 3.93872 3.94611 4.06144 4.14232 4.15117 4.20464 4.23763 4.39656 4.43071 4.44264 4.49581 4.51055 4.56526 4.57682 4.63823 4.69381 4.70717 4.82923 4.85282 4.86528 4.91444 4.98599 5.08166 5.09187 5.11160 5.22706 5.28398 5.35267 5.43475 5.51869 5.56375 6.19740 6.28812 6.50894 6.61454 7.16606 7.22649 7.36213 8.09883 8.33584 9.30853 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.044023 B = 0.001433 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.877980 B =19528.671366 C =19836.154720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C -0.121 4.121 5 C 0.124 3.876 6 N -0.721 5.721 7 C 0.518 3.482 8 O -0.578 6.578 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.524 3.476 12 O -0.579 6.579 13 N -0.610 5.610 14 C 0.104 3.896 15 C -0.146 4.146 16 C 0.164 3.836 17 H 0.069 0.931 18 N -0.731 5.731 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.074 4.074 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.297 1.297 27 C 0.133 3.867 28 H 0.065 0.935 29 C -0.143 4.143 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.055 0.945 47 H 0.087 0.913 48 H 0.380 0.620 49 H 0.250 0.750 50 H 0.059 0.941 51 H 0.054 0.946 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.807 -12.950 -7.124 34.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.017 4.017 4 C -0.159 4.159 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.306 3.694 8 O -0.458 6.458 9 C -0.159 4.159 10 C -0.150 4.150 11 C 0.315 3.685 12 O -0.459 6.459 13 N -0.344 5.344 14 C -0.018 4.018 15 C -0.187 4.187 16 C 0.054 3.946 17 H 0.087 0.913 18 N -0.373 5.373 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.266 4.266 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.187 1.187 25 H -0.224 1.224 26 H -0.225 1.225 27 C 0.028 3.972 28 H 0.083 0.917 29 C -0.201 4.201 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.105 0.895 48 H 0.216 0.784 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.073 0.927 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -30.779 -12.831 -7.212 34.117 hybrid contribution 1.146 0.345 0.528 1.308 sum -29.633 -12.486 -6.684 32.843 Atomic orbital electron populations 1.22920 0.79447 1.03798 1.00908 1.87816 1.21484 1.28766 1.95650 1.22460 0.93295 0.84531 1.01407 1.21567 0.93821 0.95960 1.04547 1.21160 0.79394 0.97109 1.02303 1.45885 1.06928 1.09539 1.75021 1.20799 0.89937 0.83912 0.74750 1.90703 1.75882 1.27972 1.51215 1.21323 0.89709 0.98092 1.06734 1.21299 0.88293 0.99013 1.06432 1.20827 0.90123 0.82391 0.75160 1.90660 1.75937 1.27129 1.52223 1.48658 1.06245 1.07264 1.72205 1.22554 0.97539 0.79276 1.02419 1.23408 0.94998 0.99997 1.00273 1.21400 0.87368 0.91310 0.94500 0.91252 1.42822 1.27286 1.31366 1.35855 1.19714 1.03199 1.03097 1.11035 0.90080 1.25525 1.00896 1.01728 0.98461 1.69826 1.30995 1.39794 1.21511 0.85099 0.78484 0.78994 0.77325 1.18719 1.22353 1.22470 1.21605 0.80364 0.97295 0.97896 0.91726 1.21804 1.00739 1.00159 0.97396 0.88693 0.93197 0.93130 0.92295 0.92201 0.90028 0.89901 0.91615 0.91781 0.74645 0.87478 0.87103 0.87176 0.87747 0.88921 0.88565 0.92580 0.89481 0.78395 0.94126 0.92226 0.92666 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.42 -5.40 10.70 -148.98 -1.59 -6.99 16 3 C 0.06 0.54 5.94 71.98 0.43 0.97 16 4 C -0.12 -0.97 5.70 30.59 0.17 -0.80 16 5 C 0.12 1.35 5.67 86.38 0.49 1.84 16 6 N -0.72 -8.44 5.56 -463.06 -2.57 -11.01 16 7 C 0.52 9.11 7.83 87.66 0.69 9.80 16 8 O -0.58 -14.37 15.98 -3.03 -0.05 -14.42 16 9 C -0.12 -1.96 4.99 29.85 0.15 -1.81 16 10 C -0.11 -2.19 3.99 29.85 0.12 -2.07 16 11 C 0.52 14.49 7.63 87.66 0.67 15.16 16 12 O -0.58 -19.59 14.87 -3.03 -0.05 -19.63 16 13 N -0.61 -17.51 3.08 -787.60 -2.43 -19.94 16 14 C 0.10 2.43 6.70 86.93 0.58 3.02 16 15 C -0.15 -4.51 6.78 32.06 0.22 -4.29 16 16 C 0.16 6.18 3.48 46.18 0.16 6.34 16 17 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 18 N -0.73 -35.62 4.94 -317.34 -1.57 -37.19 16 19 C -0.24 -12.77 9.96 84.04 0.84 -11.94 16 20 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 22 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 23 Si 0.97 45.36 29.55 68.60 2.03 47.38 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 C 0.13 4.67 3.47 45.34 0.16 4.82 16 28 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 29 C -0.14 -5.51 7.93 71.98 0.57 -4.93 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.42 2.76 8.47 -92.71 -0.79 1.98 16 40 H 0.11 1.71 8.10 -2.39 -0.02 1.69 16 41 H 0.11 1.67 8.10 -2.39 -0.02 1.65 16 42 H 0.11 1.98 8.10 -2.39 -0.02 1.96 16 43 H 0.10 2.01 7.81 -2.39 -0.02 2.00 16 44 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.10 1.83 7.48 -2.39 -0.02 1.81 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.38 20.03 5.08 -92.71 -0.47 19.56 16 49 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 50 H 0.06 2.27 6.73 -2.39 -0.02 2.25 16 51 H 0.05 2.38 6.82 -2.39 -0.02 2.36 16 52 H 0.05 1.83 8.01 -2.38 -0.02 1.81 16 Total: -1.00 -73.57 420.43 0.67 -72.90 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.35 Total: 33.60 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 6.96 Total: 13.85 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -6.28 Total: -126.69 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.69 Total: -41.04 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -73.57 0.67 -72.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331928462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.717 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds