Wall clock time and date at job start Wed Apr 1 2020 01:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47373 * 180.02562 * 5 4 3 7 7 C 1.34767 * 119.99818 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00273 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47592 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47235 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64640 * 0.02751 * 13 11 10 15 15 C 1.54903 * 104.83384 * 204.08733 * 14 13 11 16 16 C 1.55156 * 101.58443 * 322.99331 * 15 14 13 17 17 H 1.09004 * 110.72193 * 276.96086 * 16 15 14 18 18 N 1.46501 * 110.72746 * 153.85968 * 16 15 14 19 19 C 1.36938 * 119.99469 * 86.45139 * 18 16 15 20 20 H 1.08003 * 120.00650 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99604 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00245 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99942 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47035 * 89.99997 * 23 21 19 25 25 H 1.48504 * 109.46848 * 210.00183 * 23 21 19 26 26 H 1.48499 * 109.47144 * 329.99780 * 23 21 19 27 27 C 1.47017 * 125.64992 * 179.71579 * 13 11 10 28 28 H 1.08997 * 109.88380 * 59.56055 * 27 13 11 29 29 C 1.52999 * 109.88383 * 298.39769 * 27 13 11 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 34 34 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 35 35 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 36 36 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 37 37 H 1.09000 * 109.46866 * 300.00212 * 5 4 3 38 38 H 1.08996 * 109.47261 * 59.99820 * 5 4 3 39 39 H 0.97003 * 119.99531 * 0.02562 * 6 5 4 40 40 H 1.09004 * 109.46818 * 300.00682 * 9 7 6 41 41 H 1.09004 * 109.46923 * 60.00132 * 9 7 6 42 42 H 1.09000 * 109.46870 * 300.00070 * 10 9 7 43 43 H 1.09004 * 109.47108 * 59.99965 * 10 9 7 44 44 H 1.08998 * 110.37305 * 322.92892 * 14 13 11 45 45 H 1.09003 * 110.37201 * 85.25257 * 14 13 11 46 46 H 1.09007 * 111.00604 * 81.06076 * 15 14 13 47 47 H 1.08999 * 111.00967 * 204.91514 * 15 14 13 48 48 H 0.96994 * 120.00392 * 266.45752 * 18 16 15 49 49 H 0.97006 * 120.00283 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.47281 * 61.45026 * 29 27 13 51 51 H 1.09003 * 109.47483 * 181.45044 * 29 27 13 52 52 H 1.08999 * 109.47348 * 301.45136 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 7 5.6182 2.4668 0.0013 7 6 6.3820 3.5771 0.0013 8 8 5.8604 4.6721 0.0018 9 6 7.8843 3.4583 0.0019 10 6 8.5066 4.8560 0.0024 11 6 10.0089 4.7370 0.0023 12 8 10.5305 3.6420 0.0024 13 7 10.7728 5.8473 0.0022 14 6 10.2729 7.2342 0.0027 15 6 11.4241 8.0710 -0.6087 16 6 12.6720 7.3582 -0.0240 17 1 12.8859 7.7187 0.9823 18 7 13.8331 7.5459 -0.8974 19 6 14.6201 8.6582 -0.7604 20 1 14.3851 9.3968 -0.0083 21 6 15.7200 8.8364 -1.5883 22 7 16.0062 7.9365 -2.5052 23 14 16.7940 10.3533 -1.4010 24 1 17.8823 10.0724 -0.4305 25 1 17.3836 10.7078 -2.7171 26 1 15.9699 11.4854 -0.9067 27 6 12.2427 5.8761 0.0081 28 1 12.6271 5.3617 -0.8726 29 6 12.7712 5.2058 1.2778 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 -0.8900 34 1 1.6885 1.8463 0.8900 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6437 -0.8892 37 1 3.8365 3.1236 -0.8887 38 1 3.8357 3.1231 0.8912 39 1 6.0353 1.5911 0.0005 40 1 8.2056 2.9175 0.8921 41 1 8.2063 2.9171 -0.8879 42 1 8.1853 5.3970 -0.8876 43 1 8.1846 5.3967 0.8924 44 1 9.3769 7.3148 -0.6128 45 1 10.0650 7.5623 1.0212 46 1 11.4147 8.0119 -1.6972 47 1 11.3739 9.1074 -0.2749 48 1 14.0444 6.8825 -1.5726 49 1 16.7750 8.0608 -3.0835 50 1 12.4532 4.1634 1.2978 51 1 13.8602 5.2537 1.2877 52 1 12.3769 5.7227 2.1527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331928468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:03 Heat of formation + Delta-G solvation = -118.112728 kcal Electronic energy + Delta-G solvation = -29023.685928 eV Core-core repulsion = 24830.176007 eV Total energy + Delta-G solvation = -4193.509922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.31905 -39.70274 -38.52783 -37.47363 -35.85199 -34.11686 -33.17809 -32.30867 -31.45434 -30.84219 -29.16190 -27.74813 -26.21311 -25.19798 -24.61690 -23.02013 -22.36840 -22.10445 -20.60901 -19.99245 -18.72203 -17.64860 -17.20593 -17.14854 -16.93064 -16.46392 -16.27347 -15.90495 -15.74450 -15.31982 -15.16475 -14.78952 -14.54008 -14.09824 -13.75326 -13.41841 -13.36613 -13.27552 -12.91202 -12.80228 -12.64190 -12.48895 -12.39972 -12.16461 -11.98504 -11.85659 -11.67782 -11.65489 -11.58189 -11.32781 -11.14546 -11.03020 -10.83026 -10.58048 -10.25169 -10.24544 -10.15009 -10.00837 -9.76736 -9.54090 -9.47920 -8.94543 -8.38275 -7.03050 -5.81689 -3.12072 2.36462 2.60872 2.80263 3.16271 3.36648 3.41169 3.46662 3.48123 4.30678 4.33465 4.49003 4.53108 4.54858 4.73038 4.78167 4.80585 4.87466 4.88926 4.89565 4.95350 5.06843 5.13319 5.15579 5.28371 5.36539 5.43330 5.49874 5.50842 5.54631 5.62296 5.67001 5.69972 5.76679 5.80850 5.96007 6.02276 6.10449 6.14958 6.31920 6.46646 6.55968 6.59418 6.62547 6.73858 6.94024 7.10183 7.65697 7.78388 7.89712 8.33756 8.36391 9.47252 10.01912 10.36671 11.40527 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.001433 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.692305 B =19529.913462 C =19781.188585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.733 5.733 7 C 0.515 3.485 8 O -0.540 6.540 9 C -0.124 4.124 10 C -0.120 4.120 11 C 0.526 3.474 12 O -0.549 6.549 13 N -0.608 5.608 14 C 0.097 3.903 15 C -0.156 4.156 16 C 0.176 3.824 17 H 0.064 0.936 18 N -0.715 5.715 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.127 3.873 28 H 0.077 0.923 29 C -0.153 4.153 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.404 0.596 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.386 0.614 49 H 0.256 0.744 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.599 -13.269 6.641 32.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.386 5.386 7 C 0.303 3.697 8 O -0.417 6.417 9 C -0.164 4.164 10 C -0.160 4.160 11 C 0.315 3.685 12 O -0.428 6.428 13 N -0.341 5.341 14 C -0.026 4.026 15 C -0.197 4.197 16 C 0.064 3.936 17 H 0.082 0.918 18 N -0.355 5.355 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.023 3.977 28 H 0.095 0.905 29 C -0.212 4.212 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.080 0.920 51 H 0.088 0.912 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -28.521 -13.116 6.671 32.093 hybrid contribution 0.555 0.517 -0.229 0.792 sum -27.966 -12.600 6.441 31.343 Atomic orbital electron populations 1.22762 0.80608 1.02966 1.00166 1.87861 1.20052 1.27810 1.95484 1.22380 0.93223 0.84925 1.00800 1.21685 0.94006 0.96958 1.04326 1.21160 0.79923 0.96362 1.02767 1.45957 1.06631 1.09499 1.76557 1.20805 0.89810 0.83941 0.75184 1.90717 1.75321 1.26556 1.49102 1.21372 0.90016 0.98956 1.06067 1.21329 0.91379 0.97657 1.05671 1.20194 0.88845 0.83186 0.76321 1.90674 1.75120 1.25980 1.50998 1.48578 1.07492 1.06020 1.72043 1.22413 0.98240 0.81286 1.00674 1.23563 0.95491 0.99117 1.01524 1.21248 0.87637 0.89738 0.94982 0.91806 1.42340 1.27924 1.25659 1.39625 1.19207 1.05140 0.98421 1.14696 0.90993 1.24754 0.98873 0.98524 0.98424 1.69666 1.29688 1.35385 1.23036 0.86189 0.80627 0.82451 0.76886 1.21652 1.21755 1.20694 1.21890 0.78437 0.98488 0.98880 0.90499 1.22036 1.01706 1.00882 0.96541 0.93911 0.93904 0.89462 0.92815 0.92842 0.90220 0.90194 0.91213 0.91222 0.76167 0.87953 0.87894 0.88306 0.88360 0.91100 0.91632 0.90624 0.90562 0.78005 0.93384 0.91998 0.91206 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.77 10.70 -35.23 -0.38 -3.14 16 3 C 0.06 0.33 5.94 37.16 0.22 0.55 16 4 C -0.13 -0.63 5.70 -26.73 -0.15 -0.79 16 5 C 0.12 0.75 5.67 -4.04 -0.02 0.73 16 6 N -0.73 -4.99 5.56 -60.29 -0.33 -5.33 16 7 C 0.52 5.03 7.83 -10.99 -0.09 4.94 16 8 O -0.54 -7.18 15.98 5.56 0.09 -7.09 16 9 C -0.12 -1.16 4.99 -27.88 -0.14 -1.30 16 10 C -0.12 -1.34 4.00 -27.89 -0.11 -1.45 16 11 C 0.53 7.75 7.64 -10.99 -0.08 7.66 16 12 O -0.55 -9.59 15.03 5.56 0.08 -9.50 16 13 N -0.61 -9.28 3.06 -163.02 -0.50 -9.78 16 14 C 0.10 1.29 6.69 -2.53 -0.02 1.27 16 15 C -0.16 -2.55 6.77 -24.59 -0.17 -2.72 16 16 C 0.18 3.36 3.12 -66.09 -0.21 3.15 16 17 H 0.06 1.22 7.83 -51.93 -0.41 0.82 16 18 N -0.71 -17.33 5.25 -51.64 -0.27 -17.60 16 19 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 23 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.13 2.24 3.21 -66.95 -0.21 2.02 16 28 H 0.08 1.53 7.69 -51.93 -0.40 1.14 16 29 C -0.15 -2.55 9.11 37.16 0.34 -2.21 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.40 1.78 8.47 -40.82 -0.35 1.44 16 40 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 42 H 0.10 1.09 7.80 -51.93 -0.41 0.68 16 43 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 44 H 0.07 0.81 7.48 -51.93 -0.39 0.43 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 47 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.39 10.10 7.51 -40.82 -0.31 9.79 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.06 1.05 6.89 -51.93 -0.36 0.69 16 51 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 52 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 424.77 15.07 6.40 6.40 Total: -1.00 -33.91 424.77 -8.32 -42.23 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -9.34 Total: 7.75 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 0.23 Total: 6.07 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.38 Total: -59.60 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.20 Total: -19.73 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.91 -8.32 -42.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331928468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.885 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds