Wall clock time and date at job start Wed Apr 1 2020 01:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47373 * 180.02562 * 5 4 3 7 7 C 1.34767 * 119.99818 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00273 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47592 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47235 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64640 * 0.02751 * 13 11 10 15 15 C 1.54903 * 104.83384 * 204.08733 * 14 13 11 16 16 C 1.55156 * 101.58443 * 322.99331 * 15 14 13 17 17 H 1.09004 * 110.72193 * 276.96086 * 16 15 14 18 18 N 1.46501 * 110.72746 * 153.85968 * 16 15 14 19 19 C 1.36938 * 119.99469 * 86.45139 * 18 16 15 20 20 H 1.08003 * 120.00650 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99604 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00245 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99942 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47035 * 89.99997 * 23 21 19 25 25 H 1.48504 * 109.46848 * 210.00183 * 23 21 19 26 26 H 1.48499 * 109.47144 * 329.99780 * 23 21 19 27 27 C 1.47017 * 125.64992 * 179.71579 * 13 11 10 28 28 H 1.08997 * 109.88380 * 59.56055 * 27 13 11 29 29 C 1.52999 * 109.88383 * 298.39769 * 27 13 11 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 34 34 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 35 35 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 36 36 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 37 37 H 1.09000 * 109.46866 * 300.00212 * 5 4 3 38 38 H 1.08996 * 109.47261 * 59.99820 * 5 4 3 39 39 H 0.97003 * 119.99531 * 0.02562 * 6 5 4 40 40 H 1.09004 * 109.46818 * 300.00682 * 9 7 6 41 41 H 1.09004 * 109.46923 * 60.00132 * 9 7 6 42 42 H 1.09000 * 109.46870 * 300.00070 * 10 9 7 43 43 H 1.09004 * 109.47108 * 59.99965 * 10 9 7 44 44 H 1.08998 * 110.37305 * 322.92892 * 14 13 11 45 45 H 1.09003 * 110.37201 * 85.25257 * 14 13 11 46 46 H 1.09007 * 111.00604 * 81.06076 * 15 14 13 47 47 H 1.08999 * 111.00967 * 204.91514 * 15 14 13 48 48 H 0.96994 * 120.00392 * 266.45752 * 18 16 15 49 49 H 0.97006 * 120.00283 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.47281 * 61.45026 * 29 27 13 51 51 H 1.09003 * 109.47483 * 181.45044 * 29 27 13 52 52 H 1.08999 * 109.47348 * 301.45136 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 7 5.6182 2.4668 0.0013 7 6 6.3820 3.5771 0.0013 8 8 5.8604 4.6721 0.0018 9 6 7.8843 3.4583 0.0019 10 6 8.5066 4.8560 0.0024 11 6 10.0089 4.7370 0.0023 12 8 10.5305 3.6420 0.0024 13 7 10.7728 5.8473 0.0022 14 6 10.2729 7.2342 0.0027 15 6 11.4241 8.0710 -0.6087 16 6 12.6720 7.3582 -0.0240 17 1 12.8859 7.7187 0.9823 18 7 13.8331 7.5459 -0.8974 19 6 14.6201 8.6582 -0.7604 20 1 14.3851 9.3968 -0.0083 21 6 15.7200 8.8364 -1.5883 22 7 16.0062 7.9365 -2.5052 23 14 16.7940 10.3533 -1.4010 24 1 17.8823 10.0724 -0.4305 25 1 17.3836 10.7078 -2.7171 26 1 15.9699 11.4854 -0.9067 27 6 12.2427 5.8761 0.0081 28 1 12.6271 5.3617 -0.8726 29 6 12.7712 5.2058 1.2778 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 -0.8900 34 1 1.6885 1.8463 0.8900 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6437 -0.8892 37 1 3.8365 3.1236 -0.8887 38 1 3.8357 3.1231 0.8912 39 1 6.0353 1.5911 0.0005 40 1 8.2056 2.9175 0.8921 41 1 8.2063 2.9171 -0.8879 42 1 8.1853 5.3970 -0.8876 43 1 8.1846 5.3967 0.8924 44 1 9.3769 7.3148 -0.6128 45 1 10.0650 7.5623 1.0212 46 1 11.4147 8.0119 -1.6972 47 1 11.3739 9.1074 -0.2749 48 1 14.0444 6.8825 -1.5726 49 1 16.7750 8.0608 -3.0835 50 1 12.4532 4.1634 1.2978 51 1 13.8602 5.2537 1.2877 52 1 12.3769 5.7227 2.1527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331928468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:02 Heat of formation + Delta-G solvation = -142.444456 kcal Electronic energy + Delta-G solvation = -29024.741031 eV Core-core repulsion = 24830.176007 eV Total energy + Delta-G solvation = -4194.565025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37874 -40.65128 -38.98281 -38.78898 -36.46440 -35.89767 -34.13127 -33.30368 -32.75617 -32.13982 -30.75839 -28.24524 -26.90423 -26.82040 -25.34211 -24.70871 -23.42944 -22.69198 -21.66314 -21.16797 -19.95611 -19.12449 -18.51740 -17.65971 -17.62372 -17.38497 -17.15881 -16.79636 -16.57722 -16.42597 -16.07544 -15.72828 -15.57948 -15.37594 -15.18854 -14.78513 -14.58295 -14.34166 -14.03547 -13.95245 -13.55591 -13.35026 -13.20810 -13.10298 -13.04629 -12.90605 -12.86929 -12.72330 -12.61066 -12.50562 -12.17821 -12.16781 -12.06907 -12.05445 -12.04716 -11.70334 -11.52094 -10.95300 -10.92893 -10.78480 -10.64118 -10.11299 -9.64217 -9.01601 -7.93255 -5.23123 1.50055 1.51318 1.59546 1.61706 1.64174 1.83453 2.21622 2.58430 2.89847 3.37276 3.46960 3.71056 3.78432 3.90213 3.94167 3.94873 4.08122 4.14232 4.15097 4.20503 4.22696 4.37897 4.43962 4.44260 4.49557 4.50985 4.53699 4.56517 4.62513 4.69218 4.70514 4.78993 4.85501 4.86499 4.96148 4.97952 5.06953 5.09076 5.11041 5.24073 5.24694 5.36458 5.43189 5.47842 5.55986 6.19679 6.27165 6.50646 6.60345 7.15458 7.22306 7.33770 8.06012 8.29771 9.30320 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.001433 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.692305 B =19529.913462 C =19781.188585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C -0.121 4.121 5 C 0.124 3.876 6 N -0.721 5.721 7 C 0.519 3.481 8 O -0.578 6.578 9 C -0.119 4.119 10 C -0.110 4.110 11 C 0.524 3.476 12 O -0.580 6.580 13 N -0.611 5.611 14 C 0.105 3.895 15 C -0.149 4.149 16 C 0.169 3.831 17 H 0.069 0.931 18 N -0.729 5.729 19 C -0.238 4.238 20 H 0.083 0.917 21 C -0.074 4.074 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.266 1.266 27 C 0.133 3.867 28 H 0.045 0.955 29 C -0.143 4.143 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.417 0.583 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.087 0.913 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.056 0.944 51 H 0.056 0.944 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.755 -12.822 8.038 34.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.017 4.017 4 C -0.159 4.159 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.306 3.694 8 O -0.458 6.458 9 C -0.159 4.159 10 C -0.150 4.150 11 C 0.315 3.685 12 O -0.460 6.460 13 N -0.344 5.344 14 C -0.017 4.017 15 C -0.189 4.189 16 C 0.059 3.941 17 H 0.087 0.913 18 N -0.369 5.369 19 C -0.369 4.369 20 H 0.101 0.899 21 C -0.266 4.266 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.216 1.216 25 H -0.226 1.226 26 H -0.190 1.190 27 C 0.028 3.972 28 H 0.063 0.937 29 C -0.201 4.201 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.203 0.797 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.075 0.925 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -30.745 -12.685 8.112 34.234 hybrid contribution 1.129 0.299 -0.630 1.327 sum -29.616 -12.386 7.482 32.962 Atomic orbital electron populations 1.22917 0.79446 1.03799 1.00909 1.87816 1.21485 1.28767 1.95651 1.22460 0.93292 0.84531 1.01408 1.21569 0.93823 0.95959 1.04546 1.21161 0.79385 0.97113 1.02310 1.45881 1.06934 1.09533 1.75011 1.20788 0.89921 0.83918 0.74758 1.90704 1.75881 1.27961 1.51216 1.21323 0.89738 0.98078 1.06730 1.21297 0.88224 0.99035 1.06457 1.20844 0.90154 0.82375 0.75157 1.90663 1.75967 1.27142 1.52261 1.48642 1.06267 1.07274 1.72204 1.22511 0.97514 0.79221 1.02466 1.23383 0.95176 1.00073 1.00304 1.21446 0.87092 0.91166 0.94353 0.91303 1.42509 1.29421 1.24788 1.40142 1.19625 1.04733 0.98788 1.13769 0.89933 1.25547 1.00724 1.01479 0.98820 1.69833 1.30334 1.37533 1.24481 0.85162 0.78885 0.79623 0.76218 1.21605 1.22614 1.19024 1.21590 0.80390 0.97152 0.98054 0.93686 1.21926 1.00846 1.00652 0.96708 0.93127 0.93200 0.88692 0.92299 0.92194 0.89898 0.90030 0.91790 0.91594 0.74643 0.87072 0.87526 0.87764 0.87103 0.88548 0.88921 0.92670 0.89422 0.79731 0.94127 0.92538 0.92506 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -5.40 10.70 -148.98 -1.59 -7.00 16 3 C 0.06 0.55 5.94 71.98 0.43 0.97 16 4 C -0.12 -0.97 5.70 30.60 0.17 -0.80 16 5 C 0.12 1.35 5.67 86.38 0.49 1.84 16 6 N -0.72 -8.47 5.56 -463.06 -2.57 -11.04 16 7 C 0.52 9.14 7.83 87.66 0.69 9.83 16 8 O -0.58 -14.39 15.98 -3.04 -0.05 -14.44 16 9 C -0.12 -1.98 4.99 29.85 0.15 -1.83 16 10 C -0.11 -2.20 4.00 29.85 0.12 -2.08 16 11 C 0.52 14.61 7.64 87.66 0.67 15.28 16 12 O -0.58 -19.81 15.03 -3.04 -0.05 -19.86 16 13 N -0.61 -17.68 3.06 -788.06 -2.41 -20.09 16 14 C 0.11 2.48 6.69 86.85 0.58 3.06 16 15 C -0.15 -4.64 6.77 31.98 0.22 -4.43 16 16 C 0.17 6.37 3.12 46.18 0.14 6.51 16 17 H 0.07 2.54 7.83 -2.38 -0.02 2.52 16 18 N -0.73 -35.90 5.25 -317.30 -1.67 -37.57 16 19 C -0.24 -12.72 9.98 84.03 0.84 -11.88 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16 23 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.13 4.68 3.21 45.35 0.15 4.82 16 28 H 0.04 1.87 7.69 -2.39 -0.02 1.85 16 29 C -0.14 -4.70 9.11 71.98 0.66 -4.04 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.27 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.42 2.78 8.47 -92.71 -0.79 2.00 16 40 H 0.11 1.68 8.10 -2.39 -0.02 1.66 16 41 H 0.11 1.73 8.10 -2.38 -0.02 1.71 16 42 H 0.10 2.03 7.80 -2.39 -0.02 2.01 16 43 H 0.11 2.00 8.10 -2.38 -0.02 1.98 16 44 H 0.10 1.86 7.48 -2.39 -0.02 1.84 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.37 20.20 7.51 -92.71 -0.70 19.50 16 49 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 50 H 0.06 1.91 6.89 -2.39 -0.02 1.89 16 51 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 52 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -73.96 424.77 0.41 -73.55 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.57 Total: 33.07 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 7.01 Total: 15.00 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -6.37 Total: -127.65 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.69 Total: -41.29 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -73.96 0.41 -73.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331928468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.893 kcal (2) G-P(sol) polarization free energy of solvation -73.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds