Wall clock time and date at job start Wed Apr 1 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99958 * 2 1 4 4 C 1.50696 * 109.47318 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99698 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00126 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00162 * 359.97438 * 6 4 3 8 8 C 1.46504 * 119.99747 * 179.97438 * 6 4 3 9 9 C 1.50695 * 109.47223 * 269.99741 * 8 6 4 10 10 O 1.21291 * 120.00004 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00321 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00214 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.46784 * 35.00215 * 12 11 9 14 14 C 1.52998 * 109.47119 * 275.00070 * 12 11 9 15 15 C 1.53002 * 109.46983 * 155.00307 * 12 11 9 16 16 C 1.53041 * 109.45892 * 300.02530 * 15 12 11 17 17 C 1.53192 * 109.31528 * 178.60312 * 16 15 12 18 18 N 1.46925 * 108.76193 * 54.65744 * 17 16 15 19 19 C 1.36936 * 120.63030 * 126.40785 * 18 17 16 20 20 H 1.07999 * 120.00001 * 331.82647 * 19 18 17 21 21 C 1.38818 * 120.00038 * 151.82238 * 19 18 17 22 22 N 1.31619 * 119.99776 * 343.07183 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 163.06804 * 21 19 18 24 24 H 1.48503 * 109.46959 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47327 * 120.00417 * 23 21 19 26 26 H 1.48504 * 109.47254 * 240.00404 * 23 21 19 27 27 C 1.46928 * 118.74121 * 306.38249 * 18 17 16 28 28 C 1.53036 * 109.45735 * 179.97438 * 15 12 11 29 29 H 1.09005 * 109.46804 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46824 * 300.00060 * 1 2 3 31 31 H 1.08995 * 109.47211 * 60.00091 * 1 2 3 32 32 H 1.08999 * 109.47138 * 60.00034 * 3 2 1 33 33 H 1.08998 * 109.46655 * 299.99901 * 3 2 1 34 34 H 1.09005 * 109.46824 * 270.00051 * 7 6 4 35 35 H 1.09003 * 109.47174 * 29.99627 * 7 6 4 36 36 H 1.08993 * 109.47247 * 149.99946 * 7 6 4 37 37 H 1.09000 * 109.46531 * 150.00009 * 8 6 4 38 38 H 1.08996 * 109.47525 * 30.00208 * 8 6 4 39 39 H 0.97000 * 120.00000 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.47271 * 299.99664 * 14 12 11 41 41 H 1.09002 * 109.47174 * 180.02562 * 14 12 11 42 42 H 1.08997 * 109.47214 * 60.00075 * 14 12 11 43 43 H 1.08988 * 109.46401 * 59.99583 * 15 12 11 44 44 H 1.09003 * 109.50284 * 298.57161 * 16 15 12 45 45 H 1.09004 * 109.49907 * 58.66426 * 16 15 12 46 46 H 1.08993 * 109.59938 * 294.87075 * 17 16 15 47 47 H 1.08998 * 109.70633 * 174.50614 * 17 16 15 48 48 H 0.97000 * 119.99690 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.58471 * 293.82895 * 27 18 17 50 50 H 1.08994 * 109.70721 * 173.46836 * 27 18 17 51 51 H 1.09001 * 109.49570 * 301.32936 * 28 15 12 52 52 H 1.09002 * 109.50466 * 61.39679 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0013 7 6 3.6464 3.6195 -0.0019 8 6 5.7369 2.1812 -0.0013 9 6 6.2378 2.1423 1.4194 10 8 5.4521 2.2046 2.3414 11 7 7.5587 2.0383 1.6657 12 6 8.0456 1.9999 3.0469 13 1 7.3289 1.4651 3.6700 14 6 8.2097 3.4284 3.5697 15 6 9.3960 1.2822 3.0919 16 6 9.2318 -0.1465 2.5683 17 6 10.5921 -0.8507 2.5820 18 7 11.1546 -0.7658 3.9366 19 6 11.5617 -1.8953 4.5951 20 1 11.0959 -2.8450 4.3770 21 6 12.5731 -1.8197 5.5430 22 7 13.3628 -0.7674 5.5801 23 14 12.8131 -3.2113 6.7657 24 1 11.8030 -4.2706 6.5146 25 1 14.1758 -3.7798 6.6075 26 1 12.6515 -2.6901 8.1469 27 6 11.2727 0.5542 4.5711 28 6 9.9047 1.2428 4.5347 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.4901 3.9469 -1.0298 35 1 2.6866 3.5650 0.5120 36 1 4.2936 4.3305 0.5115 37 1 6.1692 3.0394 -0.5156 38 1 6.0288 1.2651 -0.5147 39 1 8.1871 1.9888 0.9284 40 1 8.9265 3.9633 2.9466 41 1 8.5724 3.3999 4.5972 42 1 7.2476 3.9398 3.5377 43 1 10.1125 1.8171 2.4687 44 1 8.5342 -0.6897 3.2058 45 1 8.8471 -0.1184 1.5487 46 1 11.2638 -0.3623 1.8761 47 1 10.4672 -1.8970 2.3032 48 1 14.0693 -0.7145 6.2427 49 1 11.9998 1.1572 4.0274 50 1 11.5955 0.4372 5.6056 51 1 9.9992 2.2600 4.9150 52 1 9.2005 0.6869 5.1538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332949552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:08 Heat of formation + Delta-G solvation = -90.721579 kcal Electronic energy + Delta-G solvation = -30756.632655 eV Core-core repulsion = 26564.310502 eV Total energy + Delta-G solvation = -4192.322153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.60775 -39.52558 -38.04778 -37.58223 -35.78070 -35.17225 -32.88923 -31.51778 -30.36884 -29.64110 -29.09714 -28.15136 -26.80690 -25.73388 -25.26656 -23.08242 -21.99732 -21.08395 -20.40863 -19.71277 -19.06590 -17.76033 -17.52476 -17.05917 -16.70888 -16.45818 -16.24283 -15.50102 -15.21173 -15.05660 -14.75286 -14.46358 -14.06149 -13.71293 -13.55426 -13.44818 -13.31141 -13.28338 -13.25319 -12.95772 -12.83206 -12.57854 -12.37858 -12.28934 -12.06498 -11.80716 -11.78217 -11.32364 -11.09881 -10.95518 -10.68858 -10.38353 -10.23002 -10.18321 -10.13603 -10.11111 -10.03143 -9.86126 -9.50324 -9.43589 -8.97423 -8.91811 -8.43352 -6.62210 -5.75289 -3.17106 2.17649 2.38723 2.61575 3.25147 3.40008 3.47954 3.50941 3.55313 4.20761 4.53604 4.55678 4.65685 4.66427 4.77075 4.78287 4.91705 4.96016 4.98667 5.04033 5.14600 5.24922 5.25596 5.29617 5.38166 5.41811 5.55660 5.69366 5.75818 5.88316 5.90500 6.00202 6.12231 6.21489 6.27854 6.37779 6.52048 6.56009 6.57299 6.65773 6.76542 6.81991 6.89617 6.94542 7.04969 7.40286 7.53037 7.69301 7.84265 7.87068 8.23288 8.49533 9.25908 9.89436 10.46182 11.33218 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.002201 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.509110 B =12716.861380 C =13713.040335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.519 3.481 5 O -0.510 6.510 6 N -0.601 5.601 7 C 0.080 3.920 8 C 0.097 3.903 9 C 0.496 3.504 10 O -0.536 6.536 11 N -0.718 5.718 12 C 0.145 3.855 13 H 0.084 0.916 14 C -0.160 4.160 15 C -0.083 4.083 16 C -0.126 4.126 17 C 0.146 3.854 18 N -0.593 5.593 19 C -0.248 4.248 20 H 0.065 0.935 21 C 0.000 4.000 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.399 0.601 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.015 0.985 47 H 0.052 0.948 48 H 0.252 0.748 49 H 0.017 0.983 50 H 0.087 0.913 51 H 0.053 0.947 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.708 13.897 -14.536 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.032 4.032 4 C 0.306 3.694 5 O -0.383 6.383 6 N -0.336 5.336 7 C -0.063 4.063 8 C -0.030 4.030 9 C 0.280 3.720 10 O -0.412 6.412 11 N -0.370 5.370 12 C 0.041 3.959 13 H 0.102 0.898 14 C -0.218 4.218 15 C -0.102 4.102 16 C -0.165 4.165 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.378 4.378 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.046 3.954 28 C -0.174 4.174 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.233 0.767 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.035 0.965 50 H 0.105 0.895 51 H 0.071 0.929 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.769 13.166 -13.756 28.922 hybrid contribution 0.314 -0.247 0.376 0.548 sum -21.456 12.919 -13.380 28.395 Atomic orbital electron populations 1.22849 0.80255 1.03464 1.00074 1.88036 1.19871 1.25136 1.95395 1.22236 0.91406 0.87059 1.02482 1.20238 0.88828 0.84056 0.76251 1.90762 1.74353 1.26106 1.47126 1.47270 1.05199 1.06623 1.74524 1.21852 0.99117 0.83611 1.01701 1.21327 0.80921 1.05780 0.94944 1.21065 0.82714 0.76378 0.91813 1.90693 1.55280 1.49194 1.46024 1.46104 1.06943 1.74393 1.09531 1.21157 0.96720 0.96269 0.81755 0.89789 1.22185 1.01326 0.96376 1.01938 1.21325 0.93812 0.95983 0.99080 1.22036 0.99940 0.95389 0.99128 1.20890 0.91378 0.97838 0.87951 1.44061 1.72357 1.03638 1.11480 1.19239 1.12848 0.88242 1.17496 0.91742 1.25038 0.95534 0.97642 1.01596 1.70041 1.18767 1.30046 1.36031 0.86240 0.77485 0.81803 0.81381 1.20259 1.21780 1.21580 1.20756 0.90041 0.84615 0.99967 1.22271 1.01325 0.99847 0.93911 0.88972 0.93733 0.93822 0.89992 0.90242 0.92070 0.90906 0.90573 0.87301 0.86678 0.76700 0.92692 0.91029 0.92943 0.91515 0.92379 0.93336 0.96673 0.92934 0.93770 0.96531 0.89492 0.92853 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.19 10.24 -55.14 -0.56 -4.76 16 3 C 0.05 0.42 4.97 36.00 0.18 0.60 16 4 C 0.52 6.41 7.75 -10.99 -0.09 6.33 16 5 O -0.51 -8.81 16.08 -14.36 -0.23 -9.04 16 6 N -0.60 -5.70 2.36 -182.96 -0.43 -6.13 16 7 C 0.08 0.42 10.24 59.85 0.61 1.03 16 8 C 0.10 0.89 5.89 -5.19 -0.03 0.86 16 9 C 0.50 6.35 7.86 -10.99 -0.09 6.26 16 10 O -0.54 -9.03 16.09 5.55 0.09 -8.94 16 11 N -0.72 -8.49 4.36 -53.81 -0.23 -8.72 16 12 C 0.14 2.06 2.16 -67.93 -0.15 1.91 16 13 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 14 C -0.16 -2.03 9.13 37.16 0.34 -1.69 16 15 C -0.08 -1.33 1.79 -90.58 -0.16 -1.49 16 16 C -0.13 -2.21 5.22 -26.61 -0.14 -2.35 16 17 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 18 N -0.59 -15.01 2.99 -172.32 -0.52 -15.53 16 19 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 20 H 0.06 1.80 7.89 -52.49 -0.41 1.38 16 21 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 22 N -0.90 -26.46 11.19 55.49 0.62 -25.83 16 23 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 28 C -0.13 -2.51 5.04 -26.61 -0.13 -2.64 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.58 7.40 -51.93 -0.38 0.19 16 33 H 0.08 0.43 8.11 -51.93 -0.42 0.00 16 34 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.31 6.44 -51.93 -0.33 -0.03 16 36 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.11 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.12 1.12 7.42 -51.93 -0.39 0.73 16 39 H 0.40 3.69 8.39 -40.82 -0.34 3.35 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.03 8.14 -51.94 -0.42 0.61 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.74 7.41 -51.93 -0.38 0.35 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 2.33 6.07 -51.93 -0.31 2.01 16 51 H 0.05 0.88 6.36 -51.93 -0.33 0.55 16 52 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 413.00 15.07 6.22 6.22 Total: -1.00 -37.76 413.00 -7.96 -45.72 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -9.07 Total: -0.17 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 1.19 Total: 10.08 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.56 Total: -56.21 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.71 Total: -22.74 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.76 -7.96 -45.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332949552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.005 kcal (2) G-P(sol) polarization free energy of solvation -37.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds