Wall clock time and date at job start Wed Apr 1 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99958 * 2 1 4 4 C 1.50696 * 109.47318 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99698 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00126 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00162 * 359.97438 * 6 4 3 8 8 C 1.46504 * 119.99747 * 179.97438 * 6 4 3 9 9 C 1.50695 * 109.47223 * 269.99741 * 8 6 4 10 10 O 1.21291 * 120.00004 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00321 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00214 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.46784 * 35.00215 * 12 11 9 14 14 C 1.52998 * 109.47119 * 275.00070 * 12 11 9 15 15 C 1.53002 * 109.46983 * 155.00307 * 12 11 9 16 16 C 1.53041 * 109.45892 * 300.02530 * 15 12 11 17 17 C 1.53192 * 109.31528 * 178.60312 * 16 15 12 18 18 N 1.46925 * 108.76193 * 54.65744 * 17 16 15 19 19 C 1.36936 * 120.63030 * 126.40785 * 18 17 16 20 20 H 1.07999 * 120.00001 * 331.82647 * 19 18 17 21 21 C 1.38818 * 120.00038 * 151.82238 * 19 18 17 22 22 N 1.31619 * 119.99776 * 343.07183 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 163.06804 * 21 19 18 24 24 H 1.48503 * 109.46959 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47327 * 120.00417 * 23 21 19 26 26 H 1.48504 * 109.47254 * 240.00404 * 23 21 19 27 27 C 1.46928 * 118.74121 * 306.38249 * 18 17 16 28 28 C 1.53036 * 109.45735 * 179.97438 * 15 12 11 29 29 H 1.09005 * 109.46804 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46824 * 300.00060 * 1 2 3 31 31 H 1.08995 * 109.47211 * 60.00091 * 1 2 3 32 32 H 1.08999 * 109.47138 * 60.00034 * 3 2 1 33 33 H 1.08998 * 109.46655 * 299.99901 * 3 2 1 34 34 H 1.09005 * 109.46824 * 270.00051 * 7 6 4 35 35 H 1.09003 * 109.47174 * 29.99627 * 7 6 4 36 36 H 1.08993 * 109.47247 * 149.99946 * 7 6 4 37 37 H 1.09000 * 109.46531 * 150.00009 * 8 6 4 38 38 H 1.08996 * 109.47525 * 30.00208 * 8 6 4 39 39 H 0.97000 * 120.00000 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.47271 * 299.99664 * 14 12 11 41 41 H 1.09002 * 109.47174 * 180.02562 * 14 12 11 42 42 H 1.08997 * 109.47214 * 60.00075 * 14 12 11 43 43 H 1.08988 * 109.46401 * 59.99583 * 15 12 11 44 44 H 1.09003 * 109.50284 * 298.57161 * 16 15 12 45 45 H 1.09004 * 109.49907 * 58.66426 * 16 15 12 46 46 H 1.08993 * 109.59938 * 294.87075 * 17 16 15 47 47 H 1.08998 * 109.70633 * 174.50614 * 17 16 15 48 48 H 0.97000 * 119.99690 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.58471 * 293.82895 * 27 18 17 50 50 H 1.08994 * 109.70721 * 173.46836 * 27 18 17 51 51 H 1.09001 * 109.49570 * 301.32936 * 28 15 12 52 52 H 1.09002 * 109.50466 * 61.39679 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0013 7 6 3.6464 3.6195 -0.0019 8 6 5.7369 2.1812 -0.0013 9 6 6.2378 2.1423 1.4194 10 8 5.4521 2.2046 2.3414 11 7 7.5587 2.0383 1.6657 12 6 8.0456 1.9999 3.0469 13 1 7.3289 1.4651 3.6700 14 6 8.2097 3.4284 3.5697 15 6 9.3960 1.2822 3.0919 16 6 9.2318 -0.1465 2.5683 17 6 10.5921 -0.8507 2.5820 18 7 11.1546 -0.7658 3.9366 19 6 11.5617 -1.8953 4.5951 20 1 11.0959 -2.8450 4.3770 21 6 12.5731 -1.8197 5.5430 22 7 13.3628 -0.7674 5.5801 23 14 12.8131 -3.2113 6.7657 24 1 11.8030 -4.2706 6.5146 25 1 14.1758 -3.7798 6.6075 26 1 12.6515 -2.6901 8.1469 27 6 11.2727 0.5542 4.5711 28 6 9.9047 1.2428 4.5347 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.4901 3.9469 -1.0298 35 1 2.6866 3.5650 0.5120 36 1 4.2936 4.3305 0.5115 37 1 6.1692 3.0394 -0.5156 38 1 6.0288 1.2651 -0.5147 39 1 8.1871 1.9888 0.9284 40 1 8.9265 3.9633 2.9466 41 1 8.5724 3.3999 4.5972 42 1 7.2476 3.9398 3.5377 43 1 10.1125 1.8171 2.4687 44 1 8.5342 -0.6897 3.2058 45 1 8.8471 -0.1184 1.5487 46 1 11.2638 -0.3623 1.8761 47 1 10.4672 -1.8970 2.3032 48 1 14.0693 -0.7145 6.2427 49 1 11.9998 1.1572 4.0274 50 1 11.5955 0.4372 5.6056 51 1 9.9992 2.2600 4.9150 52 1 9.2005 0.6869 5.1538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332949552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:07 Heat of formation + Delta-G solvation = -117.363056 kcal Electronic energy + Delta-G solvation = -30757.787916 eV Core-core repulsion = 26564.310502 eV Total energy + Delta-G solvation = -4193.477414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.50491 -40.56956 -39.37373 -38.41651 -36.91842 -36.36010 -34.52155 -33.02845 -31.53097 -31.22777 -30.30425 -28.78980 -27.38180 -27.16334 -26.30145 -24.61239 -23.68339 -22.36358 -21.55502 -20.86649 -20.36146 -18.82475 -18.49268 -18.27517 -17.79716 -17.21980 -17.19586 -16.81072 -16.35805 -16.14434 -15.88909 -15.61827 -15.33602 -15.23339 -14.90760 -14.80251 -14.67000 -14.32910 -14.05084 -13.95491 -13.87747 -13.58512 -13.41877 -13.35591 -13.15675 -12.98755 -12.84190 -12.72145 -12.64036 -12.40656 -12.34335 -12.16458 -12.01162 -11.81811 -11.50713 -11.32296 -11.09873 -11.05913 -10.91632 -10.78143 -10.55375 -10.03867 -9.75496 -8.67466 -7.88998 -5.33565 1.37329 1.42975 1.45128 1.55679 1.64211 1.68375 2.33178 2.49410 2.97762 3.24748 3.55644 3.66938 3.70607 3.84897 3.95522 4.05844 4.07780 4.18593 4.21569 4.30486 4.38865 4.42295 4.47083 4.48456 4.54530 4.55944 4.58891 4.72927 4.75155 4.81314 4.85468 4.89647 4.93513 4.98627 5.02556 5.11807 5.18284 5.27586 5.29680 5.35060 5.44298 5.52528 5.57249 5.64752 5.79498 5.98504 6.27669 6.38855 6.58761 7.06006 7.14830 7.28579 7.86787 8.37186 9.16972 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.002201 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.509110 B =12716.861380 C =13713.040335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.049 3.951 4 C 0.505 3.495 5 O -0.576 6.576 6 N -0.598 5.598 7 C 0.072 3.928 8 C 0.098 3.902 9 C 0.493 3.507 10 O -0.581 6.581 11 N -0.709 5.709 12 C 0.157 3.843 13 H 0.051 0.949 14 C -0.152 4.152 15 C -0.071 4.071 16 C -0.113 4.113 17 C 0.142 3.858 18 N -0.613 5.613 19 C -0.263 4.263 20 H 0.059 0.941 21 C -0.050 4.050 22 N -0.931 5.931 23 Si 0.964 3.036 24 H -0.272 1.272 25 H -0.289 1.289 26 H -0.288 1.288 27 C 0.178 3.822 28 C -0.122 4.122 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.158 0.842 38 H 0.109 0.891 39 H 0.415 0.585 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.033 0.967 45 H 0.078 0.922 46 H 0.024 0.976 47 H 0.044 0.956 48 H 0.250 0.750 49 H 0.004 0.996 50 H 0.050 0.950 51 H 0.079 0.921 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.166 16.092 -16.344 32.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.030 4.030 4 C 0.294 3.706 5 O -0.454 6.454 6 N -0.331 5.331 7 C -0.070 4.070 8 C -0.029 4.029 9 C 0.279 3.721 10 O -0.460 6.460 11 N -0.361 5.361 12 C 0.051 3.949 13 H 0.069 0.931 14 C -0.210 4.210 15 C -0.090 4.090 16 C -0.152 4.152 17 C 0.017 3.983 18 N -0.337 5.337 19 C -0.393 4.393 20 H 0.076 0.924 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.196 1.196 25 H -0.216 1.216 26 H -0.215 1.215 27 C 0.052 3.948 28 C -0.161 4.161 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.176 0.824 38 H 0.127 0.873 39 H 0.252 0.748 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.022 0.978 50 H 0.069 0.931 51 H 0.097 0.903 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -23.241 15.418 -15.611 31.962 hybrid contribution 0.753 -0.903 0.901 1.481 sum -22.489 14.515 -14.710 30.542 Atomic orbital electron populations 1.23040 0.78151 1.04141 1.01756 1.87976 1.22334 1.27003 1.95782 1.22409 0.88937 0.86643 1.05010 1.21042 0.90577 0.83794 0.75170 1.90718 1.75683 1.28562 1.50483 1.47481 1.05327 1.07559 1.72733 1.22179 0.99371 0.81347 1.04056 1.21492 0.81229 1.07665 0.92486 1.21752 0.82348 0.75063 0.92933 1.90676 1.56351 1.51278 1.47732 1.45963 1.07289 1.73890 1.08983 1.20799 0.94453 0.96739 0.82860 0.93058 1.22105 1.01811 0.95082 1.02044 1.21185 0.95287 0.95347 0.97218 1.21883 0.97119 0.95716 1.00518 1.21038 0.93024 0.98143 0.86135 1.44338 1.72655 1.03469 1.13195 1.19487 1.12699 0.89032 1.18087 0.92364 1.25749 0.95534 1.00041 1.03204 1.70170 1.19265 1.31705 1.36615 0.85264 0.77307 0.79251 0.78980 1.19646 1.21578 1.21493 1.20592 0.92389 0.84360 0.97456 1.22075 0.97857 1.00279 0.95916 0.88979 0.92553 0.91520 0.88309 0.86343 0.88773 0.89871 0.90269 0.82426 0.87270 0.74799 0.90628 0.91383 0.93110 0.89672 0.94768 0.90305 0.95812 0.93697 0.94041 0.97778 0.93130 0.90293 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -9.23 10.24 -129.94 -1.33 -10.56 16 3 C 0.05 0.78 4.97 71.23 0.35 1.13 16 4 C 0.51 12.10 7.75 87.66 0.68 12.78 16 5 O -0.58 -20.42 16.08 16.00 0.26 -20.16 16 6 N -0.60 -10.02 2.36 -851.15 -2.01 -12.03 16 7 C 0.07 0.50 10.24 127.77 1.31 1.81 16 8 C 0.10 1.55 5.89 85.63 0.50 2.06 16 9 C 0.49 11.84 7.86 87.66 0.69 12.52 16 10 O -0.58 -19.31 16.09 -3.07 -0.05 -19.36 16 11 N -0.71 -15.18 4.36 -442.53 -1.93 -17.11 16 12 C 0.16 4.22 2.16 44.99 0.10 4.31 16 13 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 14 C -0.15 -3.51 9.13 71.98 0.66 -2.85 16 15 C -0.07 -2.18 1.79 -10.77 -0.02 -2.20 16 16 C -0.11 -3.91 5.22 30.67 0.16 -3.75 16 17 C 0.14 6.01 6.52 86.36 0.56 6.57 16 18 N -0.61 -31.67 2.99 -699.10 -2.09 -33.76 16 19 C -0.26 -15.06 9.58 84.04 0.81 -14.25 16 20 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 21 C -0.05 -2.86 4.92 84.86 0.42 -2.45 16 22 N -0.93 -55.81 11.19 21.65 0.24 -55.57 16 23 Si 0.96 46.40 29.59 68.60 2.03 48.43 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 C 0.18 8.59 5.30 86.36 0.46 9.05 16 28 C -0.12 -4.53 5.04 30.67 0.15 -4.38 16 29 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 1.18 7.40 -2.39 -0.02 1.16 16 33 H 0.12 0.87 8.11 -2.39 -0.02 0.85 16 34 H 0.09 0.09 8.14 -2.38 -0.02 0.07 16 35 H 0.08 0.42 6.44 -2.39 -0.02 0.41 16 36 H 0.08 0.55 8.07 -2.39 -0.02 0.53 16 37 H 0.16 0.92 8.07 -2.39 -0.02 0.90 16 38 H 0.11 1.95 7.42 -2.39 -0.02 1.93 16 39 H 0.42 6.28 8.39 -92.71 -0.78 5.51 16 40 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.07 1.61 6.40 -2.39 -0.02 1.60 16 42 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 2.24 7.41 -2.38 -0.02 2.23 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.04 1.93 7.93 -2.39 -0.02 1.91 16 48 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 49 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16 51 H 0.08 2.53 6.36 -2.39 -0.02 2.51 16 52 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -87.57 413.00 3.32 -84.25 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.13 Total: 13.97 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 8.08 Total: 21.90 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -5.79 Total: -118.47 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.12 Total: -50.08 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -87.57 3.32 -84.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332949552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.115 kcal (2) G-P(sol) polarization free energy of solvation -87.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds