Wall clock time and date at job start Wed Apr 1 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46993 * 2 1 4 4 C 1.52999 * 109.46746 * 119.99639 * 2 1 3 5 5 N 1.46494 * 109.47388 * 65.79505 * 4 2 1 6 6 C 1.34777 * 120.00429 * 175.96676 * 5 4 2 7 7 O 1.21351 * 119.99835 * 0.27612 * 6 5 4 8 8 C 1.49453 * 120.00466 * 180.27026 * 6 5 4 9 9 O 1.21351 * 119.99698 * 0.02562 * 8 6 5 10 10 N 1.34775 * 120.00092 * 180.02562 * 8 6 5 11 11 C 1.46494 * 119.99449 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.46720 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47114 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00202 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00118 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00513 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99969 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46942 * 90.00080 * 17 15 13 19 19 H 1.48499 * 109.47236 * 209.99818 * 17 15 13 20 20 H 1.48503 * 109.46889 * 330.00107 * 17 15 13 21 21 N 1.46895 * 109.47163 * 239.99822 * 2 1 3 22 22 C 1.47012 * 111.00182 * 58.91163 * 21 2 1 23 23 C 1.53098 * 109.25764 * 182.39227 * 22 21 2 24 24 H 1.08992 * 109.50656 * 63.09631 * 23 22 21 25 25 C 1.53005 * 109.50530 * 183.22236 * 23 22 21 26 26 O 1.43019 * 109.26079 * 303.15269 * 23 22 21 27 27 C 1.43017 * 113.73144 * 58.67314 * 26 23 22 28 28 H 1.08992 * 109.50848 * 61.26526 * 27 26 23 29 29 C 1.53003 * 109.50288 * 181.35056 * 27 26 23 30 30 C 1.47009 * 110.99900 * 182.55448 * 21 2 1 31 31 H 1.09006 * 109.47046 * 300.00107 * 1 2 3 32 32 H 1.09005 * 109.47149 * 60.00044 * 1 2 3 33 33 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47346 * 305.79178 * 4 2 1 35 35 H 1.09006 * 109.46679 * 185.79320 * 4 2 1 36 36 H 0.97003 * 120.00000 * 356.23864 * 5 4 2 37 37 H 0.96996 * 119.99716 * 0.02562 * 10 8 6 38 38 H 1.09001 * 109.47763 * 299.99384 * 11 10 8 39 39 H 1.09003 * 109.47400 * 60.00536 * 11 10 8 40 40 H 1.09005 * 109.47195 * 299.99621 * 12 11 10 41 41 H 1.08994 * 109.47355 * 60.00087 * 12 11 10 42 42 H 0.96993 * 120.00379 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.51312 * 302.33333 * 22 21 2 44 44 H 1.09003 * 109.50266 * 62.46133 * 22 21 2 45 45 H 1.09004 * 109.47244 * 59.99989 * 25 23 22 46 46 H 1.09000 * 109.47200 * 180.02562 * 25 23 22 47 47 H 1.08995 * 109.47046 * 300.00309 * 25 23 22 48 48 H 1.09003 * 109.47090 * 60.00056 * 29 27 26 49 49 H 1.09000 * 109.47316 * 180.02562 * 29 27 26 50 50 H 1.09001 * 109.47127 * 299.99922 * 29 27 26 51 51 H 1.08997 * 109.50804 * 297.54001 * 30 21 2 52 52 H 1.08995 * 109.50888 * 57.67163 * 30 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6688 -2.1367 1.1817 6 6 2.0845 -2.9889 2.1396 7 8 2.7621 -2.5827 3.0607 8 6 1.7110 -4.4342 2.0674 9 8 1.0337 -4.8405 1.1461 10 7 2.1263 -5.2862 3.0255 11 6 1.7605 -6.7030 2.9544 12 6 2.3538 -7.4437 4.1545 13 6 1.9781 -8.9012 4.0811 14 1 1.3760 -9.2631 3.2607 15 6 2.4030 -9.7730 5.0612 16 7 2.0748 -11.0449 4.9974 17 14 3.4451 -9.1474 6.4798 18 1 2.5602 -8.7189 7.5927 19 1 4.3427 -10.2325 6.9508 20 1 4.2607 -7.9933 6.0234 21 7 2.0197 -0.6925 -1.1994 22 6 1.5272 -0.0412 -2.4218 23 6 2.0107 -0.8279 -3.6430 24 1 1.5842 -1.8307 -3.6221 25 6 1.5692 -0.1106 -4.9204 26 8 3.4379 -0.9150 -3.6133 27 6 3.9517 -1.5448 -2.4366 28 1 3.5818 -2.5684 -2.3805 29 6 5.4808 -1.5563 -2.4896 30 6 3.4880 -0.7653 -1.2031 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.5944 -0.2707 2.1362 35 1 3.1251 -0.6322 1.3027 36 1 1.1272 -2.4615 0.4455 37 1 2.6673 -4.9613 3.7621 38 1 0.6748 -6.7992 2.9691 39 1 2.1510 -7.1332 2.0322 40 1 3.4395 -7.3476 4.1403 41 1 1.9630 -7.0134 5.0765 42 1 2.3740 -11.6582 5.6867 43 1 0.4375 -0.0210 -2.4099 44 1 1.9102 0.9782 -2.4706 45 1 1.9978 0.8914 -4.9411 46 1 1.9133 -0.6714 -5.7894 47 1 0.4816 -0.0410 -4.9406 48 1 5.8502 -0.5322 -2.5441 49 1 5.8719 -2.0368 -1.5928 50 1 5.8097 -2.1085 -3.3700 51 1 3.9023 0.2424 -1.2324 52 1 3.8295 -1.2738 -0.3016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333025486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:06 Heat of formation + Delta-G solvation = -118.794554 kcal Electronic energy + Delta-G solvation = -30592.858637 eV Core-core repulsion = 26399.319149 eV Total energy + Delta-G solvation = -4193.539488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75832 -40.14303 -38.44805 -37.36507 -35.35254 -34.38688 -34.07367 -32.79625 -31.76698 -30.27458 -30.11874 -28.26781 -26.48445 -25.57599 -24.95942 -23.21098 -22.23579 -21.02414 -20.88450 -20.44063 -20.16578 -18.30685 -17.20446 -16.99229 -16.93614 -16.57070 -15.98793 -15.72783 -15.65600 -15.18263 -14.96120 -14.67666 -14.46701 -14.29012 -14.16383 -13.92444 -13.56123 -13.33603 -13.27019 -13.04710 -12.85836 -12.63380 -12.60863 -12.44661 -12.31448 -12.27386 -11.96154 -11.81643 -11.56819 -11.46694 -11.34476 -11.23982 -11.12621 -10.78442 -10.43513 -10.29166 -9.95564 -9.90146 -9.44599 -9.33355 -9.28910 -8.87521 -8.74720 -8.60588 -6.11936 -4.12555 1.59396 2.51184 3.17477 3.26768 3.30796 3.34748 3.36706 3.41010 3.90896 4.11496 4.34615 4.38064 4.42195 4.50863 4.68295 4.71751 4.72822 4.77512 4.78318 4.97598 5.04224 5.06617 5.14419 5.20258 5.21117 5.22372 5.26781 5.28322 5.40241 5.40920 5.54386 5.58464 5.68840 5.73032 5.77890 5.83567 5.98610 6.09585 6.11856 6.45832 6.48570 6.48836 6.54186 6.90099 6.99860 7.15437 7.19505 7.62571 7.63394 7.90797 8.25318 8.42483 8.91460 9.48042 11.00793 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.002109 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.802789 B =13275.178043 C =13714.862379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 H 0.060 0.940 4 C 0.124 3.876 5 N -0.690 5.690 6 C 0.506 3.494 7 O -0.527 6.527 8 C 0.498 3.502 9 O -0.527 6.527 10 N -0.692 5.692 11 C 0.128 3.872 12 C -0.024 4.024 13 C -0.523 4.523 14 H 0.077 0.923 15 C 0.070 3.930 16 N -0.897 5.897 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.265 1.265 21 N -0.533 5.533 22 C 0.023 3.977 23 C 0.089 3.911 24 H 0.069 0.931 25 C -0.144 4.144 26 O -0.381 6.381 27 C 0.091 3.909 28 H 0.069 0.931 29 C -0.145 4.145 30 C 0.021 3.979 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.419 0.581 37 H 0.408 0.592 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.265 0.735 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.043 0.957 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 28.491 -16.039 32.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.040 4.040 3 H 0.078 0.922 4 C 0.000 4.000 5 N -0.345 5.345 6 C 0.286 3.714 7 O -0.404 6.404 8 C 0.278 3.722 9 O -0.404 6.404 10 N -0.343 5.343 11 C 0.006 3.994 12 C -0.061 4.061 13 C -0.562 4.562 14 H 0.095 0.905 15 C -0.132 4.132 16 N -0.536 5.536 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.190 1.190 21 N -0.258 5.258 22 C -0.105 4.105 23 C 0.031 3.969 24 H 0.087 0.913 25 C -0.201 4.201 26 O -0.300 6.300 27 C 0.033 3.967 28 H 0.087 0.913 29 C -0.202 4.202 30 C -0.107 4.107 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.258 0.742 37 H 0.244 0.756 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.086 0.914 51 H 0.061 0.939 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.324 27.887 -16.072 32.188 hybrid contribution 0.701 0.947 1.097 1.610 sum 1.025 28.834 -14.975 32.507 Atomic orbital electron populations 1.21941 0.93216 1.03350 1.02332 1.21951 0.96685 0.96006 0.89381 0.92200 1.21499 1.00667 0.80737 0.97126 1.45613 1.53755 1.08057 1.27102 1.20437 0.80620 0.87620 0.82684 1.90747 1.37505 1.78655 1.33444 1.19974 0.81863 0.86652 0.83737 1.90751 1.37888 1.78348 1.33459 1.46196 1.52105 1.10343 1.25682 1.21697 1.00465 0.76019 1.01218 1.19824 0.96655 0.96799 0.92869 1.20878 1.34255 0.90149 1.10903 0.90535 1.24992 0.95650 0.94720 0.97866 1.69898 1.45765 1.03082 1.34810 0.86766 0.80816 0.78857 0.82768 1.20169 1.21240 1.18955 1.62194 1.09439 1.52541 1.01617 1.22892 1.01372 0.96411 0.89847 1.22139 0.81467 0.99128 0.94166 0.91310 1.21741 1.01199 1.00909 0.96290 1.87986 1.20394 1.80723 1.40942 1.22129 0.94697 0.96147 0.83743 0.91256 1.21750 0.92618 1.02846 1.03016 1.22895 0.87511 1.00150 1.00129 0.91492 0.91976 0.91203 0.90372 0.90899 0.74248 0.75639 0.91319 0.91285 0.95742 0.96175 0.92513 0.89092 0.93939 0.92003 0.91461 0.90898 0.91988 0.90749 0.91397 0.93851 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.81 37.16 0.33 -0.55 16 2 C 0.07 0.45 2.33 -67.71 -0.16 0.29 16 3 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 4 C 0.12 1.04 4.65 -4.05 -0.02 1.02 16 5 N -0.69 -7.48 5.13 -60.73 -0.31 -7.79 16 6 C 0.51 7.14 7.89 -11.58 -0.09 7.04 16 7 O -0.53 -8.35 16.48 5.50 0.09 -8.26 16 8 C 0.50 8.22 7.89 -11.58 -0.09 8.13 16 9 O -0.53 -9.74 16.48 5.50 0.09 -9.65 16 10 N -0.69 -11.92 5.55 -60.73 -0.34 -12.25 16 11 C 0.13 2.56 5.61 -4.04 -0.02 2.54 16 12 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 13 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 14 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 17 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 21 N -0.53 -4.02 4.05 -226.34 -0.92 -4.94 16 22 C 0.02 0.15 4.60 -3.71 -0.02 0.14 16 23 C 0.09 0.68 3.43 -26.68 -0.09 0.59 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 C -0.14 -0.84 9.57 37.16 0.36 -0.48 16 26 O -0.38 -3.68 10.11 -35.23 -0.36 -4.03 16 27 C 0.09 0.80 3.42 -26.68 -0.09 0.71 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 C -0.14 -1.09 9.57 37.16 0.36 -0.73 16 30 C 0.02 0.17 4.56 -3.71 -0.02 0.15 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.30 6.33 -51.93 -0.33 -0.03 16 33 H 0.07 0.49 7.15 -51.93 -0.37 0.12 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.64 6.65 -51.93 -0.35 0.30 16 36 H 0.42 4.55 6.77 -40.82 -0.28 4.28 16 37 H 0.41 6.53 7.94 -40.82 -0.32 6.21 16 38 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 41 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.09 0.51 6.16 -51.93 -0.32 0.19 16 44 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 52 H 0.09 0.78 6.26 -51.93 -0.33 0.45 16 LS Contribution 412.06 15.07 6.21 6.21 Total: -1.00 -32.10 412.06 -8.52 -40.62 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.99 Total: 4.79 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.11 Total: 5.23 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.79 Total: -51.39 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.18 Total: -21.94 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.10 -8.52 -40.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333025486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.176 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds