Wall clock time and date at job start Wed Apr 1 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46993 * 2 1 4 4 C 1.52999 * 109.46746 * 119.99639 * 2 1 3 5 5 N 1.46494 * 109.47388 * 65.79505 * 4 2 1 6 6 C 1.34777 * 120.00429 * 175.96676 * 5 4 2 7 7 O 1.21351 * 119.99835 * 0.27612 * 6 5 4 8 8 C 1.49453 * 120.00466 * 180.27026 * 6 5 4 9 9 O 1.21351 * 119.99698 * 0.02562 * 8 6 5 10 10 N 1.34775 * 120.00092 * 180.02562 * 8 6 5 11 11 C 1.46494 * 119.99449 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.46720 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47114 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00202 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00118 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00513 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99969 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46942 * 90.00080 * 17 15 13 19 19 H 1.48499 * 109.47236 * 209.99818 * 17 15 13 20 20 H 1.48503 * 109.46889 * 330.00107 * 17 15 13 21 21 N 1.46895 * 109.47163 * 239.99822 * 2 1 3 22 22 C 1.47012 * 111.00182 * 58.91163 * 21 2 1 23 23 C 1.53098 * 109.25764 * 182.39227 * 22 21 2 24 24 H 1.08992 * 109.50656 * 63.09631 * 23 22 21 25 25 C 1.53005 * 109.50530 * 183.22236 * 23 22 21 26 26 O 1.43019 * 109.26079 * 303.15269 * 23 22 21 27 27 C 1.43017 * 113.73144 * 58.67314 * 26 23 22 28 28 H 1.08992 * 109.50848 * 61.26526 * 27 26 23 29 29 C 1.53003 * 109.50288 * 181.35056 * 27 26 23 30 30 C 1.47009 * 110.99900 * 182.55448 * 21 2 1 31 31 H 1.09006 * 109.47046 * 300.00107 * 1 2 3 32 32 H 1.09005 * 109.47149 * 60.00044 * 1 2 3 33 33 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47346 * 305.79178 * 4 2 1 35 35 H 1.09006 * 109.46679 * 185.79320 * 4 2 1 36 36 H 0.97003 * 120.00000 * 356.23864 * 5 4 2 37 37 H 0.96996 * 119.99716 * 0.02562 * 10 8 6 38 38 H 1.09001 * 109.47763 * 299.99384 * 11 10 8 39 39 H 1.09003 * 109.47400 * 60.00536 * 11 10 8 40 40 H 1.09005 * 109.47195 * 299.99621 * 12 11 10 41 41 H 1.08994 * 109.47355 * 60.00087 * 12 11 10 42 42 H 0.96993 * 120.00379 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.51312 * 302.33333 * 22 21 2 44 44 H 1.09003 * 109.50266 * 62.46133 * 22 21 2 45 45 H 1.09004 * 109.47244 * 59.99989 * 25 23 22 46 46 H 1.09000 * 109.47200 * 180.02562 * 25 23 22 47 47 H 1.08995 * 109.47046 * 300.00309 * 25 23 22 48 48 H 1.09003 * 109.47090 * 60.00056 * 29 27 26 49 49 H 1.09000 * 109.47316 * 180.02562 * 29 27 26 50 50 H 1.09001 * 109.47127 * 299.99922 * 29 27 26 51 51 H 1.08997 * 109.50804 * 297.54001 * 30 21 2 52 52 H 1.08995 * 109.50888 * 57.67163 * 30 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6688 -2.1367 1.1817 6 6 2.0845 -2.9889 2.1396 7 8 2.7621 -2.5827 3.0607 8 6 1.7110 -4.4342 2.0674 9 8 1.0337 -4.8405 1.1461 10 7 2.1263 -5.2862 3.0255 11 6 1.7605 -6.7030 2.9544 12 6 2.3538 -7.4437 4.1545 13 6 1.9781 -8.9012 4.0811 14 1 1.3760 -9.2631 3.2607 15 6 2.4030 -9.7730 5.0612 16 7 2.0748 -11.0449 4.9974 17 14 3.4451 -9.1474 6.4798 18 1 2.5602 -8.7189 7.5927 19 1 4.3427 -10.2325 6.9508 20 1 4.2607 -7.9933 6.0234 21 7 2.0197 -0.6925 -1.1994 22 6 1.5272 -0.0412 -2.4218 23 6 2.0107 -0.8279 -3.6430 24 1 1.5842 -1.8307 -3.6221 25 6 1.5692 -0.1106 -4.9204 26 8 3.4379 -0.9150 -3.6133 27 6 3.9517 -1.5448 -2.4366 28 1 3.5818 -2.5684 -2.3805 29 6 5.4808 -1.5563 -2.4896 30 6 3.4880 -0.7653 -1.2031 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.5944 -0.2707 2.1362 35 1 3.1251 -0.6322 1.3027 36 1 1.1272 -2.4615 0.4455 37 1 2.6673 -4.9613 3.7621 38 1 0.6748 -6.7992 2.9691 39 1 2.1510 -7.1332 2.0322 40 1 3.4395 -7.3476 4.1403 41 1 1.9630 -7.0134 5.0765 42 1 2.3740 -11.6582 5.6867 43 1 0.4375 -0.0210 -2.4099 44 1 1.9102 0.9782 -2.4706 45 1 1.9978 0.8914 -4.9411 46 1 1.9133 -0.6714 -5.7894 47 1 0.4816 -0.0410 -4.9406 48 1 5.8502 -0.5322 -2.5441 49 1 5.8719 -2.0368 -1.5928 50 1 5.8097 -2.1085 -3.3700 51 1 3.9023 0.2424 -1.2324 52 1 3.8295 -1.2738 -0.3016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333025486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:05 Heat of formation + Delta-G solvation = -143.677054 kcal Electronic energy + Delta-G solvation = -30593.937623 eV Core-core repulsion = 26399.319149 eV Total energy + Delta-G solvation = -4194.618474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76736 -40.98868 -39.64173 -38.13984 -36.87425 -35.37109 -34.76438 -34.66529 -32.43529 -32.11332 -30.70150 -28.98015 -27.61611 -26.67418 -25.70837 -24.51042 -22.85056 -22.65379 -21.68213 -21.49646 -20.95345 -19.54762 -19.01585 -17.98397 -17.63498 -17.58749 -17.07231 -16.69242 -16.49312 -16.24212 -16.07773 -15.94396 -15.85939 -15.29825 -15.08631 -14.88624 -14.73533 -14.55928 -14.41131 -13.87882 -13.71483 -13.54158 -13.39086 -13.18837 -13.06673 -12.97720 -12.88243 -12.82854 -12.79103 -12.53421 -12.34442 -12.22165 -12.19086 -11.94891 -11.78257 -11.68883 -11.51036 -11.41067 -10.78971 -10.69663 -10.55003 -10.29369 -10.19583 -9.44354 -8.30107 -6.36892 0.36096 1.35517 1.39611 1.41246 1.52508 2.15720 2.36377 2.54072 2.69418 2.80450 3.04935 3.48368 3.53073 3.78784 3.82211 3.92931 4.08354 4.13210 4.17375 4.26949 4.27680 4.39107 4.39410 4.44732 4.48759 4.61333 4.64224 4.66438 4.69998 4.72503 4.73415 4.87495 4.93989 4.97144 5.00260 5.01455 5.13073 5.16742 5.18746 5.28859 5.30455 5.32387 5.37268 5.59006 5.88203 5.91337 5.98219 6.20970 6.26452 6.39805 6.69205 6.77577 6.96852 7.27607 8.86114 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.002109 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.802789 B =13275.178043 C =13714.862379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 H 0.076 0.924 4 C 0.121 3.879 5 N -0.673 5.673 6 C 0.513 3.487 7 O -0.544 6.544 8 C 0.499 3.501 9 O -0.549 6.549 10 N -0.689 5.689 11 C 0.143 3.857 12 C -0.017 4.017 13 C -0.536 4.536 14 H 0.035 0.965 15 C 0.007 3.993 16 N -0.947 5.947 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.241 1.241 21 N -0.544 5.544 22 C 0.028 3.972 23 C 0.082 3.918 24 H 0.056 0.944 25 C -0.139 4.139 26 O -0.396 6.396 27 C 0.088 3.912 28 H 0.051 0.949 29 C -0.142 4.142 30 C 0.027 3.973 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.421 0.579 37 H 0.417 0.583 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.268 0.732 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.048 0.952 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 31.626 -15.388 35.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 H 0.094 0.906 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.293 3.707 7 O -0.422 6.422 8 C 0.279 3.721 9 O -0.428 6.428 10 N -0.341 5.341 11 C 0.020 3.980 12 C -0.055 4.055 13 C -0.574 4.574 14 H 0.054 0.946 15 C -0.191 4.191 16 N -0.587 5.587 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.212 1.212 20 H -0.164 1.164 21 N -0.269 5.269 22 C -0.099 4.099 23 C 0.024 3.976 24 H 0.074 0.926 25 C -0.196 4.196 26 O -0.317 6.317 27 C 0.030 3.970 28 H 0.070 0.930 29 C -0.199 4.199 30 C -0.101 4.101 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.259 0.741 37 H 0.254 0.746 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.124 0.876 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.066 0.934 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.806 31.075 -15.452 34.715 hybrid contribution 0.465 -0.043 0.755 0.887 sum 1.271 31.032 -14.697 34.360 Atomic orbital electron populations 1.21934 0.92409 1.02801 1.03455 1.21944 0.97180 0.96240 0.87964 0.90576 1.21728 1.00844 0.79005 0.98614 1.45617 1.52333 1.08826 1.25822 1.19873 0.80951 0.86543 0.83308 1.90748 1.38635 1.78488 1.34303 1.20430 0.80994 0.87770 0.82866 1.90742 1.38757 1.79048 1.34214 1.45970 1.52491 1.09182 1.26429 1.21258 0.99562 0.77602 0.99620 1.19691 0.97327 0.93946 0.94502 1.21199 1.33503 0.93016 1.09680 0.94616 1.26005 0.97175 0.94737 1.01162 1.70057 1.47615 1.04771 1.36286 0.85620 0.79103 0.78915 0.78770 1.19061 1.21150 1.16425 1.62195 1.09084 1.53285 1.02380 1.22872 1.02129 0.96092 0.88857 1.22305 0.80588 0.99002 0.95709 0.92574 1.21734 1.02356 1.00514 0.95033 1.87972 1.21596 1.80712 1.41377 1.22153 0.95390 0.95342 0.84142 0.93048 1.21736 0.91850 1.03160 1.03168 1.22782 0.88017 1.00031 0.99236 0.90561 0.90747 0.92530 0.89427 0.90955 0.74090 0.74613 0.92324 0.92396 0.94645 0.94734 0.92315 0.87636 0.93604 0.91833 0.92056 0.89041 0.91491 0.90155 0.91731 0.93429 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.81 71.98 0.63 -0.69 16 2 C 0.07 0.79 2.33 44.92 0.10 0.89 16 3 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 4 C 0.12 1.76 4.65 86.38 0.40 2.16 16 5 N -0.67 -13.52 5.13 -464.41 -2.38 -15.90 16 6 C 0.51 13.74 7.89 87.27 0.69 14.43 16 7 O -0.54 -16.21 16.48 -3.25 -0.05 -16.26 16 8 C 0.50 16.03 7.89 87.27 0.69 16.72 16 9 O -0.55 -20.13 16.48 -3.25 -0.05 -20.18 16 10 N -0.69 -22.96 5.55 -464.41 -2.58 -25.53 16 11 C 0.14 5.70 5.61 86.38 0.48 6.18 16 12 C -0.02 -0.75 4.16 29.85 0.12 -0.63 16 13 C -0.54 -30.25 9.66 25.60 0.25 -30.01 16 14 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 15 C 0.01 0.38 5.47 84.65 0.46 0.85 16 16 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 17 Si 0.95 42.83 27.47 68.60 1.88 44.72 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 21 N -0.54 -7.29 4.05 -870.01 -3.53 -10.81 16 22 C 0.03 0.32 4.60 86.31 0.40 0.72 16 23 C 0.08 1.19 3.43 30.63 0.10 1.29 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 C -0.14 -1.43 9.57 71.98 0.69 -0.74 16 26 O -0.40 -7.49 10.11 -148.98 -1.51 -9.00 16 27 C 0.09 1.53 3.42 30.63 0.10 1.63 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 C -0.14 -2.07 9.57 71.98 0.69 -1.38 16 30 C 0.03 0.41 4.56 86.32 0.39 0.80 16 31 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.50 6.33 -2.38 -0.02 0.48 16 33 H 0.06 0.67 7.15 -2.39 -0.02 0.66 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.12 6.65 -2.38 -0.02 1.10 16 36 H 0.42 8.58 6.77 -92.71 -0.63 7.96 16 37 H 0.42 12.55 7.94 -92.71 -0.74 11.82 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.04 1.52 7.20 -2.38 -0.02 1.50 16 41 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.11 0.90 6.16 -2.39 -0.01 0.89 16 44 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.08 1.35 6.26 -2.39 -0.01 1.33 16 Total: -1.00 -69.87 412.06 -2.20 -72.06 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.50 Total: 27.10 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.21 Total: 12.23 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -8.18 Total: -110.67 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.61 Total: -45.44 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.72 kcal Total: -69.87 -2.20 -72.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333025486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.612 kcal (2) G-P(sol) polarization free energy of solvation -69.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds