Wall clock time and date at job start Wed Apr 1 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47230 * 2 1 4 4 C 1.53000 * 109.47397 * 240.00367 * 2 1 3 5 5 N 1.46495 * 109.47501 * 184.99734 * 4 2 1 6 6 C 1.34778 * 120.00452 * 179.97438 * 5 4 2 7 7 O 1.21356 * 119.99488 * 0.02562 * 6 5 4 8 8 C 1.49448 * 120.00288 * 180.02562 * 6 5 4 9 9 O 1.21351 * 119.99950 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99691 * 180.02562 * 8 6 5 11 11 C 1.46500 * 119.99663 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47310 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00092 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00370 * 180.02562 * 13 12 11 16 16 N 1.31525 * 119.99826 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00429 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46779 * 59.99656 * 17 15 13 19 19 H 1.48500 * 109.47214 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46802 * 300.00152 * 17 15 13 21 21 N 1.46896 * 109.47430 * 120.00132 * 2 1 3 22 22 C 1.47016 * 111.00332 * 295.00592 * 21 2 1 23 23 C 1.53096 * 109.25942 * 182.38961 * 22 21 2 24 24 H 1.09001 * 109.50680 * 63.08252 * 23 22 21 25 25 C 1.53004 * 109.50447 * 183.21372 * 23 22 21 26 26 O 1.43014 * 109.25720 * 303.14604 * 23 22 21 27 27 C 1.43014 * 113.73678 * 58.67430 * 26 23 22 28 28 H 1.09000 * 109.50924 * 61.26568 * 27 26 23 29 29 C 1.52998 * 109.50391 * 181.34903 * 27 26 23 30 30 C 1.47024 * 110.99604 * 58.63634 * 21 2 1 31 31 H 1.09003 * 109.47288 * 59.99976 * 1 2 3 32 32 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47136 * 299.99830 * 1 2 3 34 34 H 1.09001 * 109.47367 * 305.00236 * 4 2 1 35 35 H 1.08999 * 109.46907 * 65.00052 * 4 2 1 36 36 H 0.96995 * 120.00052 * 0.02562 * 5 4 2 37 37 H 0.97000 * 120.00568 * 359.97438 * 10 8 6 38 38 H 1.09009 * 109.47342 * 300.00332 * 11 10 8 39 39 H 1.08998 * 109.47591 * 59.99906 * 11 10 8 40 40 H 1.08998 * 109.46712 * 299.99845 * 12 11 10 41 41 H 1.08999 * 109.46907 * 60.00006 * 12 11 10 42 42 H 0.96995 * 119.99861 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.50851 * 62.44637 * 22 21 2 44 44 H 1.09004 * 109.50278 * 302.32401 * 22 21 2 45 45 H 1.08992 * 109.47180 * 59.99733 * 25 23 22 46 46 H 1.08993 * 109.46793 * 180.02562 * 25 23 22 47 47 H 1.09006 * 109.46866 * 299.99643 * 25 23 22 48 48 H 1.09005 * 109.47153 * 60.00186 * 29 27 26 49 49 H 1.09006 * 109.47098 * 180.02562 * 29 27 26 50 50 H 1.09001 * 109.47654 * 299.99671 * 29 27 26 51 51 H 1.08993 * 109.50322 * 57.67582 * 30 21 2 52 52 H 1.09000 * 109.50281 * 297.54177 * 30 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.1731 -1.4290 -2.1908 7 8 3.5695 -1.8842 -3.1401 8 6 5.6624 -1.5366 -2.1307 9 8 6.2658 -1.0818 -1.1811 10 7 6.3354 -2.1389 -3.1311 11 6 7.7953 -2.2450 -3.0719 12 6 8.3055 -2.9654 -4.3216 13 6 9.8073 -3.0739 -4.2611 14 1 10.3444 -2.6692 -3.4159 15 6 10.4959 -3.6890 -5.2850 16 7 9.8420 -4.1814 -6.3144 17 14 12.3575 -3.8242 -5.2096 18 1 12.7494 -4.5930 -4.0011 19 1 12.8526 -4.5232 -6.4226 20 1 12.9503 -2.4641 -5.1448 21 7 2.0197 -0.6925 1.1994 22 6 1.6484 0.0396 2.4190 23 6 2.2280 -0.6831 3.6379 24 1 3.3165 -0.6770 3.5810 25 6 1.7782 0.0287 4.9154 26 8 1.7581 -2.0337 3.6530 27 6 2.1027 -2.7763 2.4804 28 1 3.1875 -2.8311 2.3899 29 6 1.5266 -4.1899 2.5833 30 6 1.5218 -2.0749 1.2497 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6054 -1.7197 -1.2953 35 1 1.7517 -0.1581 -2.1369 36 1 3.9823 -0.4627 -0.4317 37 1 5.8531 -2.5028 -3.8900 38 1 8.2306 -1.2467 -3.0253 39 1 8.0831 -2.8085 -2.1844 40 1 7.8703 -3.9636 -4.3686 41 1 8.0178 -2.4014 -5.2089 42 1 10.3265 -4.6138 -7.0349 43 1 0.5624 0.0806 2.5025 44 1 2.0489 1.0523 2.3718 45 1 0.6898 0.0203 4.9720 46 1 2.1916 -0.4859 5.7827 47 1 2.1334 1.0592 4.9015 48 1 0.4416 -4.1345 2.6722 49 1 1.7899 -4.7556 1.6894 50 1 1.9382 -4.6871 3.4617 51 1 1.8299 -2.6057 0.3489 52 1 0.4337 -2.0677 1.3146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333025488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:10 Heat of formation + Delta-G solvation = -123.575827 kcal Electronic energy + Delta-G solvation = -30407.931172 eV Core-core repulsion = 26214.184353 eV Total energy + Delta-G solvation = -4193.746820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73847 -40.12739 -38.34049 -37.36967 -35.24725 -34.32514 -34.03410 -32.82482 -31.74219 -30.07657 -29.78502 -27.63213 -26.95895 -25.52646 -24.93222 -23.08868 -22.37662 -21.36977 -20.99085 -20.22239 -19.92294 -18.17395 -17.13955 -16.85817 -16.73646 -16.28884 -16.02637 -15.67266 -15.53358 -15.23379 -14.97038 -14.72580 -14.53389 -14.41876 -14.06853 -13.67733 -13.40164 -13.28868 -13.19048 -13.14388 -12.77336 -12.55716 -12.48146 -12.35696 -12.30819 -12.24867 -12.03477 -11.84918 -11.44067 -11.32243 -11.21968 -11.13520 -11.03493 -10.75455 -10.67497 -10.37006 -9.89776 -9.77509 -9.42816 -9.27429 -9.17117 -8.80307 -8.65794 -8.39923 -6.08909 -4.12594 1.68006 2.58529 3.22567 3.31401 3.33237 3.35514 3.38421 3.49738 3.97110 4.16219 4.37937 4.41552 4.42972 4.62050 4.67017 4.71175 4.72740 4.79696 4.84121 5.00649 5.04553 5.05404 5.13712 5.16704 5.21529 5.24591 5.27752 5.29248 5.41666 5.46197 5.56697 5.60112 5.63179 5.71948 5.76963 5.84474 6.16668 6.21001 6.26294 6.48245 6.50788 6.63169 6.72669 6.91616 7.16752 7.49573 7.59591 7.73994 7.88523 7.99505 8.23976 8.38571 8.92797 9.52131 11.02503 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.001977 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.077843 B =14160.843554 C =14792.399862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 H 0.095 0.905 4 C 0.126 3.874 5 N -0.693 5.693 6 C 0.505 3.495 7 O -0.526 6.526 8 C 0.497 3.503 9 O -0.532 6.532 10 N -0.687 5.687 11 C 0.119 3.881 12 C 0.011 3.989 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.530 5.530 22 C 0.023 3.977 23 C 0.089 3.911 24 H 0.069 0.931 25 C -0.144 4.144 26 O -0.381 6.381 27 C 0.090 3.910 28 H 0.069 0.931 29 C -0.145 4.145 30 C 0.018 3.982 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.419 0.581 37 H 0.410 0.590 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.089 0.911 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.195 8.441 18.893 31.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.041 4.041 3 H 0.113 0.887 4 C 0.002 3.998 5 N -0.347 5.347 6 C 0.286 3.714 7 O -0.402 6.402 8 C 0.277 3.723 9 O -0.410 6.410 10 N -0.338 5.338 11 C -0.003 4.003 12 C -0.026 4.026 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 N -0.254 5.254 22 C -0.105 4.105 23 C 0.031 3.969 24 H 0.087 0.913 25 C -0.201 4.201 26 O -0.300 6.300 27 C 0.032 3.968 28 H 0.087 0.913 29 C -0.202 4.202 30 C -0.110 4.110 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.257 0.743 37 H 0.245 0.755 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.107 0.893 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.733 8.243 18.826 30.646 hybrid contribution 0.201 0.047 -0.340 0.398 sum -22.532 8.289 18.486 30.301 Atomic orbital electron populations 1.22378 0.96002 1.02949 1.03035 1.22011 0.93802 0.98854 0.89479 0.88674 1.21487 0.80097 1.01188 0.97059 1.45591 1.07239 1.58267 1.23651 1.20464 0.88997 0.78961 0.82942 1.90753 1.70011 1.46612 1.32836 1.19984 0.87653 0.80613 0.84096 1.90733 1.69639 1.47636 1.32968 1.46224 1.09930 1.55531 1.22149 1.21917 0.75119 1.01260 1.01959 1.19349 0.96569 0.95733 0.90973 1.20977 0.91142 1.38126 1.05960 0.92226 1.25006 0.98819 0.95211 0.95270 1.69953 1.35863 1.38204 1.09070 0.86553 0.85065 0.78355 0.77434 1.20104 1.21248 1.20105 1.62393 1.59079 1.02206 1.01759 1.22852 0.99340 0.98391 0.89919 1.22134 0.98477 0.82082 0.94207 0.91339 1.21738 1.02180 0.99882 0.96324 1.87981 1.78681 1.23168 1.40200 1.22136 0.99303 0.91421 0.83923 0.91328 1.21748 1.01626 0.93870 1.02974 1.22921 0.98479 0.89637 0.99954 0.91247 0.91802 0.91759 0.91056 0.90391 0.74324 0.75450 0.91925 0.91918 0.95684 0.95684 0.92733 0.93486 0.89562 0.92013 0.91496 0.90899 0.91999 0.90757 0.91450 0.89317 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 8.49 37.15 0.32 -0.69 16 2 C 0.07 0.45 2.51 -67.72 -0.17 0.28 16 3 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 4 C 0.13 1.11 4.70 -4.04 -0.02 1.09 16 5 N -0.69 -7.95 5.38 -60.73 -0.33 -8.28 16 6 C 0.51 7.57 7.89 -11.59 -0.09 7.47 16 7 O -0.53 -8.85 16.48 5.49 0.09 -8.76 16 8 C 0.50 8.65 7.89 -11.59 -0.09 8.56 16 9 O -0.53 -10.19 16.48 5.50 0.09 -10.10 16 10 N -0.69 -12.66 5.55 -60.73 -0.34 -12.99 16 11 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 17 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 N -0.53 -4.03 4.16 -226.33 -0.94 -4.97 16 22 C 0.02 0.16 4.59 -3.71 -0.02 0.14 16 23 C 0.09 0.69 3.43 -26.68 -0.09 0.60 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 C -0.14 -0.84 9.57 37.16 0.36 -0.49 16 26 O -0.38 -3.65 10.11 -35.23 -0.36 -4.01 16 27 C 0.09 0.79 3.42 -26.68 -0.09 0.70 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 C -0.14 -1.07 9.57 37.16 0.36 -0.72 16 30 C 0.02 0.14 4.14 -3.70 -0.02 0.13 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 6.44 -51.93 -0.33 0.04 16 33 H 0.06 0.33 6.58 -51.93 -0.34 -0.01 16 34 H 0.07 0.66 6.65 -51.93 -0.35 0.32 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.42 4.75 7.61 -40.82 -0.31 4.44 16 37 H 0.41 7.22 7.94 -40.82 -0.32 6.89 16 38 H 0.06 1.34 8.14 -51.92 -0.42 0.91 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.05 0.32 6.56 -51.93 -0.34 -0.03 16 44 H 0.09 0.49 8.13 -51.93 -0.42 0.07 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.09 0.77 6.33 -51.93 -0.33 0.44 16 52 H 0.05 0.38 6.42 -51.93 -0.33 0.04 16 LS Contribution 414.60 15.07 6.25 6.25 Total: -1.00 -31.59 414.60 -8.92 -40.51 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.96 Total: 4.98 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.14 Total: 6.50 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.87 Total: -51.68 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.18 Total: -22.87 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.59 -8.92 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333025488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.068 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds