Wall clock time and date at job start Wed Apr 1 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47230 * 2 1 4 4 C 1.53000 * 109.47397 * 240.00367 * 2 1 3 5 5 N 1.46495 * 109.47501 * 184.99734 * 4 2 1 6 6 C 1.34778 * 120.00452 * 179.97438 * 5 4 2 7 7 O 1.21356 * 119.99488 * 0.02562 * 6 5 4 8 8 C 1.49448 * 120.00288 * 180.02562 * 6 5 4 9 9 O 1.21351 * 119.99950 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99691 * 180.02562 * 8 6 5 11 11 C 1.46500 * 119.99663 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47310 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00092 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00370 * 180.02562 * 13 12 11 16 16 N 1.31525 * 119.99826 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00429 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46779 * 59.99656 * 17 15 13 19 19 H 1.48500 * 109.47214 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46802 * 300.00152 * 17 15 13 21 21 N 1.46896 * 109.47430 * 120.00132 * 2 1 3 22 22 C 1.47016 * 111.00332 * 295.00592 * 21 2 1 23 23 C 1.53096 * 109.25942 * 182.38961 * 22 21 2 24 24 H 1.09001 * 109.50680 * 63.08252 * 23 22 21 25 25 C 1.53004 * 109.50447 * 183.21372 * 23 22 21 26 26 O 1.43014 * 109.25720 * 303.14604 * 23 22 21 27 27 C 1.43014 * 113.73678 * 58.67430 * 26 23 22 28 28 H 1.09000 * 109.50924 * 61.26568 * 27 26 23 29 29 C 1.52998 * 109.50391 * 181.34903 * 27 26 23 30 30 C 1.47024 * 110.99604 * 58.63634 * 21 2 1 31 31 H 1.09003 * 109.47288 * 59.99976 * 1 2 3 32 32 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47136 * 299.99830 * 1 2 3 34 34 H 1.09001 * 109.47367 * 305.00236 * 4 2 1 35 35 H 1.08999 * 109.46907 * 65.00052 * 4 2 1 36 36 H 0.96995 * 120.00052 * 0.02562 * 5 4 2 37 37 H 0.97000 * 120.00568 * 359.97438 * 10 8 6 38 38 H 1.09009 * 109.47342 * 300.00332 * 11 10 8 39 39 H 1.08998 * 109.47591 * 59.99906 * 11 10 8 40 40 H 1.08998 * 109.46712 * 299.99845 * 12 11 10 41 41 H 1.08999 * 109.46907 * 60.00006 * 12 11 10 42 42 H 0.96995 * 119.99861 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.50851 * 62.44637 * 22 21 2 44 44 H 1.09004 * 109.50278 * 302.32401 * 22 21 2 45 45 H 1.08992 * 109.47180 * 59.99733 * 25 23 22 46 46 H 1.08993 * 109.46793 * 180.02562 * 25 23 22 47 47 H 1.09006 * 109.46866 * 299.99643 * 25 23 22 48 48 H 1.09005 * 109.47153 * 60.00186 * 29 27 26 49 49 H 1.09006 * 109.47098 * 180.02562 * 29 27 26 50 50 H 1.09001 * 109.47654 * 299.99671 * 29 27 26 51 51 H 1.08993 * 109.50322 * 57.67582 * 30 21 2 52 52 H 1.09000 * 109.50281 * 297.54177 * 30 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.1731 -1.4290 -2.1908 7 8 3.5695 -1.8842 -3.1401 8 6 5.6624 -1.5366 -2.1307 9 8 6.2658 -1.0818 -1.1811 10 7 6.3354 -2.1389 -3.1311 11 6 7.7953 -2.2450 -3.0719 12 6 8.3055 -2.9654 -4.3216 13 6 9.8073 -3.0739 -4.2611 14 1 10.3444 -2.6692 -3.4159 15 6 10.4959 -3.6890 -5.2850 16 7 9.8420 -4.1814 -6.3144 17 14 12.3575 -3.8242 -5.2096 18 1 12.7494 -4.5930 -4.0011 19 1 12.8526 -4.5232 -6.4226 20 1 12.9503 -2.4641 -5.1448 21 7 2.0197 -0.6925 1.1994 22 6 1.6484 0.0396 2.4190 23 6 2.2280 -0.6831 3.6379 24 1 3.3165 -0.6770 3.5810 25 6 1.7782 0.0287 4.9154 26 8 1.7581 -2.0337 3.6530 27 6 2.1027 -2.7763 2.4804 28 1 3.1875 -2.8311 2.3899 29 6 1.5266 -4.1899 2.5833 30 6 1.5218 -2.0749 1.2497 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6054 -1.7197 -1.2953 35 1 1.7517 -0.1581 -2.1369 36 1 3.9823 -0.4627 -0.4317 37 1 5.8531 -2.5028 -3.8900 38 1 8.2306 -1.2467 -3.0253 39 1 8.0831 -2.8085 -2.1844 40 1 7.8703 -3.9636 -4.3686 41 1 8.0178 -2.4014 -5.2089 42 1 10.3265 -4.6138 -7.0349 43 1 0.5624 0.0806 2.5025 44 1 2.0489 1.0523 2.3718 45 1 0.6898 0.0203 4.9720 46 1 2.1916 -0.4859 5.7827 47 1 2.1334 1.0592 4.9015 48 1 0.4416 -4.1345 2.6722 49 1 1.7899 -4.7556 1.6894 50 1 1.9382 -4.6871 3.4617 51 1 1.8299 -2.6057 0.3489 52 1 0.4337 -2.0677 1.3146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333025488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:09 Heat of formation + Delta-G solvation = -147.407532 kcal Electronic energy + Delta-G solvation = -30408.964592 eV Core-core repulsion = 26214.184353 eV Total energy + Delta-G solvation = -4194.780240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74835 -41.05663 -39.61637 -38.15076 -36.83799 -35.42434 -34.76254 -34.63982 -32.40735 -31.67881 -30.64475 -28.46236 -27.67864 -26.96986 -25.80263 -24.49976 -22.99410 -22.77939 -22.03344 -21.34781 -20.75067 -19.42503 -18.56458 -17.83276 -17.77840 -17.48431 -17.00881 -16.77066 -16.49942 -16.45007 -16.16499 -15.83747 -15.74954 -15.54952 -14.98110 -14.87385 -14.53060 -14.30081 -14.09141 -13.91225 -13.80756 -13.64381 -13.26109 -13.13498 -13.01167 -12.92307 -12.86679 -12.82520 -12.75559 -12.65825 -12.54110 -12.39779 -12.26518 -11.92361 -11.70810 -11.68023 -11.45288 -11.37777 -10.68038 -10.60472 -10.54796 -10.29221 -10.17021 -9.38036 -8.22898 -6.34226 0.36200 1.35630 1.44107 1.45845 1.54068 2.15903 2.40281 2.58291 2.71271 2.83443 3.11772 3.49400 3.54062 3.81453 3.82958 4.02395 4.09798 4.12118 4.15851 4.25002 4.39704 4.42624 4.45111 4.45545 4.49167 4.54661 4.64480 4.66924 4.69505 4.77252 4.81569 4.81737 4.93794 4.99529 5.03203 5.09775 5.11596 5.15737 5.19470 5.26847 5.30385 5.42713 5.55265 5.75988 5.89889 5.92792 5.99817 6.13422 6.27920 6.40840 6.74587 6.80832 6.97081 7.35154 8.88846 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.001977 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.077843 B =14160.843554 C =14792.399862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 H 0.107 0.893 4 C 0.123 3.877 5 N -0.674 5.674 6 C 0.512 3.488 7 O -0.546 6.546 8 C 0.499 3.501 9 O -0.549 6.549 10 N -0.690 5.690 11 C 0.138 3.862 12 C 0.019 3.981 13 C -0.545 4.545 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.968 3.032 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.267 1.267 21 N -0.542 5.542 22 C 0.028 3.972 23 C 0.082 3.918 24 H 0.056 0.944 25 C -0.139 4.139 26 O -0.396 6.396 27 C 0.087 3.913 28 H 0.051 0.949 29 C -0.142 4.142 30 C 0.024 3.976 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.422 0.578 37 H 0.414 0.586 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.007 0.993 41 H 0.008 0.992 42 H 0.265 0.735 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.081 0.919 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.831 9.651 19.866 32.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.034 4.034 3 H 0.125 0.875 4 C 0.000 4.000 5 N -0.326 5.326 6 C 0.292 3.708 7 O -0.424 6.424 8 C 0.280 3.720 9 O -0.427 6.427 10 N -0.341 5.341 11 C 0.016 3.984 12 C -0.019 4.019 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.567 5.567 17 Si 0.792 3.208 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.192 1.192 21 N -0.266 5.266 22 C -0.100 4.100 23 C 0.024 3.976 24 H 0.074 0.926 25 C -0.196 4.196 26 O -0.316 6.316 27 C 0.029 3.971 28 H 0.069 0.931 29 C -0.199 4.199 30 C -0.104 4.104 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.260 0.740 37 H 0.250 0.750 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.109 0.891 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.083 0.917 51 H 0.099 0.901 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.402 9.478 19.837 32.109 hybrid contribution 0.345 -0.304 -0.585 0.745 sum -23.057 9.173 19.252 31.407 Atomic orbital electron populations 1.22322 0.94647 1.02925 1.03858 1.21988 0.94694 0.98782 0.87937 0.87520 1.21723 0.77964 1.01637 0.98680 1.45589 1.08454 1.56267 1.22331 1.19925 0.87595 0.79670 0.83601 1.90755 1.69818 1.48042 1.33826 1.20402 0.88920 0.79541 0.83181 1.90721 1.70408 1.48149 1.33450 1.46065 1.08901 1.56203 1.22916 1.21462 0.76770 1.00439 0.99771 1.19170 0.95753 0.94888 0.92040 1.21419 0.92590 1.38125 1.06230 0.91724 1.25931 1.03954 0.94748 0.94835 1.70075 1.37850 1.38983 1.09814 0.85453 0.78917 0.78720 0.77682 1.19204 1.20852 1.19160 1.62385 1.59550 1.02176 1.02502 1.22839 0.99589 0.98668 0.88889 1.22295 0.97895 0.81655 0.95733 0.92626 1.21728 1.02252 1.00545 0.95082 1.87968 1.78787 1.24193 1.40620 1.22160 0.98396 0.92226 0.84308 0.93110 1.21736 1.01821 0.93214 1.03140 1.22807 0.98632 0.89888 0.99027 0.90291 0.92254 0.91060 0.91234 0.89678 0.73997 0.74986 0.92081 0.92152 0.97447 0.97410 0.92576 0.92985 0.88126 0.91808 0.92075 0.89116 0.91495 0.90182 0.91735 0.90108 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.49 71.98 0.61 -0.87 16 2 C 0.07 0.82 2.51 44.91 0.11 0.93 16 3 H 0.11 0.99 8.12 -2.39 -0.02 0.98 16 4 C 0.12 1.95 4.70 86.38 0.41 2.36 16 5 N -0.67 -14.58 5.38 -464.41 -2.50 -17.08 16 6 C 0.51 14.93 7.89 87.27 0.69 15.62 16 7 O -0.55 -18.02 16.48 -3.27 -0.05 -18.07 16 8 C 0.50 17.17 7.89 87.27 0.69 17.86 16 9 O -0.55 -20.70 16.48 -3.25 -0.05 -20.75 16 10 N -0.69 -25.51 5.55 -464.40 -2.58 -28.09 16 11 C 0.14 5.87 5.61 86.38 0.48 6.36 16 12 C 0.02 0.97 5.09 29.85 0.15 1.12 16 13 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 14 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 15 C 0.00 0.23 5.46 84.65 0.46 0.69 16 16 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 17 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 N -0.54 -7.37 4.16 -869.97 -3.62 -10.99 16 22 C 0.03 0.32 4.59 86.31 0.40 0.72 16 23 C 0.08 1.19 3.43 30.63 0.10 1.30 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 C -0.14 -1.43 9.57 71.98 0.69 -0.74 16 26 O -0.40 -7.42 10.11 -148.98 -1.51 -8.92 16 27 C 0.09 1.51 3.42 30.63 0.10 1.62 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 C -0.14 -2.06 9.57 71.98 0.69 -1.37 16 30 C 0.02 0.37 4.14 86.31 0.36 0.73 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.57 6.44 -2.39 -0.02 0.55 16 33 H 0.07 0.53 6.58 -2.39 -0.02 0.52 16 34 H 0.07 1.19 6.65 -2.39 -0.02 1.17 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.42 8.96 7.61 -92.71 -0.71 8.26 16 37 H 0.41 14.77 7.94 -92.71 -0.74 14.03 16 38 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.05 0.57 6.56 -2.39 -0.02 0.55 16 44 H 0.10 0.88 8.13 -2.38 -0.02 0.86 16 45 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 48 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 50 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 51 H 0.08 1.34 6.33 -2.39 -0.02 1.32 16 52 H 0.05 0.76 6.42 -2.39 -0.02 0.74 16 Total: -1.00 -67.10 414.60 -2.33 -69.43 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.52 Total: 27.38 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 6.18 Total: 16.28 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -8.41 Total: -110.87 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -1.61 Total: -47.75 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -67.10 -2.33 -69.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333025488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.977 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds