Wall clock time and date at job start Wed Apr 1 2020 01:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99612 * 2 1 4 4 C 1.52995 * 109.47260 * 60.00047 * 3 2 1 5 5 C 1.53006 * 109.47282 * 299.99752 * 3 2 1 6 6 C 1.53005 * 109.46899 * 180.02562 * 3 2 1 7 7 H 1.08998 * 109.46713 * 179.97438 * 6 3 2 8 8 C 1.53005 * 109.47149 * 60.00042 * 6 3 2 9 9 N 1.46498 * 109.47202 * 299.99784 * 6 3 2 10 10 C 1.34772 * 120.00161 * 204.99821 * 9 6 3 11 11 O 1.21353 * 119.99990 * 0.02562 * 10 9 6 12 12 C 1.49449 * 120.00114 * 180.02562 * 10 9 6 13 13 O 1.21350 * 120.00033 * 6.48226 * 12 10 9 14 14 N 1.34773 * 119.99910 * 186.48877 * 12 10 9 15 15 C 1.47081 * 120.88084 * 178.47346 * 14 12 10 16 16 C 1.53233 * 108.52124 * 231.20360 * 15 14 12 17 17 N 1.46901 * 109.34128 * 306.16936 * 16 15 14 18 18 C 1.46899 * 111.00203 * 187.25322 * 17 16 15 19 19 C 1.50696 * 109.47352 * 170.00012 * 18 17 16 20 20 H 1.08000 * 120.00034 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00446 * 179.72778 * 19 18 17 22 22 N 1.31517 * 119.99576 * 0.27373 * 21 19 18 23 23 Si 1.86797 * 120.00516 * 180.27555 * 21 19 18 24 24 H 1.48510 * 109.46867 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47099 * 119.99462 * 23 21 19 26 26 H 1.48501 * 109.47302 * 239.99911 * 23 21 19 27 27 C 1.46900 * 111.26915 * 63.10507 * 17 16 15 28 28 C 1.47079 * 120.88474 * 358.48837 * 14 12 10 29 29 H 1.08994 * 109.47100 * 299.99942 * 1 2 3 30 30 H 1.09001 * 109.47507 * 60.00269 * 1 2 3 31 31 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46831 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47048 * 299.99595 * 4 3 2 34 34 H 1.09000 * 109.46877 * 59.99890 * 4 3 2 35 35 H 1.08999 * 109.47239 * 300.00714 * 5 3 2 36 36 H 1.09004 * 109.46301 * 60.00123 * 5 3 2 37 37 H 1.08995 * 109.47037 * 179.97438 * 5 3 2 38 38 H 1.09000 * 109.46966 * 59.99901 * 8 6 3 39 39 H 1.08993 * 109.47022 * 179.97438 * 8 6 3 40 40 H 1.09002 * 109.46757 * 300.00113 * 8 6 3 41 41 H 0.97001 * 119.99442 * 25.00439 * 9 6 3 42 42 H 1.08998 * 109.62892 * 111.49361 * 15 14 12 43 43 H 1.09000 * 109.78778 * 351.00863 * 15 14 12 44 44 H 1.09003 * 109.49384 * 186.20897 * 16 15 14 45 45 H 1.09004 * 109.49298 * 66.12827 * 16 15 14 46 46 H 1.09006 * 109.47178 * 50.00191 * 18 17 16 47 47 H 1.08996 * 109.47238 * 290.00350 * 18 17 16 48 48 H 0.97003 * 119.99886 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.49199 * 56.85635 * 27 17 16 50 50 H 1.09001 * 109.49147 * 176.93938 * 27 17 16 51 51 H 1.08996 * 109.63320 * 248.50744 * 28 14 12 52 52 H 1.09002 * 109.62389 * 9.08805 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2492 5 6 1.5587 2.0648 -1.2493 6 6 3.5354 1.1847 -0.0006 7 1 3.9787 2.1805 -0.0011 8 6 3.9864 0.4257 -1.2503 9 7 3.9682 0.4576 1.1952 10 6 5.2091 0.6459 1.6862 11 8 5.9678 1.4183 1.1380 12 6 5.6508 -0.0963 2.9058 13 8 4.9386 -0.9538 3.3854 14 7 6.8401 0.1868 3.4731 15 6 7.2793 -0.5082 4.6927 16 6 7.7059 0.5415 5.7243 17 7 8.7058 1.4350 5.1243 18 6 9.2670 2.3475 6.1294 19 6 10.4508 3.0732 5.5438 20 1 10.7561 2.8759 4.5268 21 6 11.1412 3.9927 6.3047 22 7 10.7697 4.2326 7.5433 23 14 12.6039 4.8979 5.5763 24 1 12.8154 4.4507 4.1760 25 1 12.3412 6.3593 5.5954 26 1 13.8182 4.6026 6.3785 27 6 8.1419 2.1817 3.9918 28 6 7.7332 1.1991 2.8892 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.0024 3.0604 1.2494 33 1 0.4721 2.1508 1.2492 34 1 1.8804 1.5238 2.1392 35 1 1.8803 1.5238 -2.1393 36 1 0.4721 2.1507 -1.2492 37 1 2.0016 3.0607 -1.2490 38 1 3.6644 0.9668 -2.1400 39 1 5.0730 0.3401 -1.2509 40 1 3.5431 -0.5701 -1.2502 41 1 3.3616 -0.1595 1.6336 42 1 8.1235 -1.1574 4.4604 43 1 6.4591 -1.1036 5.0938 44 1 8.1374 0.0437 6.5927 45 1 6.8368 1.1229 6.0323 46 1 9.5860 1.7761 7.0012 47 1 8.5082 3.0712 6.4271 48 1 11.2552 4.8798 8.0785 49 1 7.2668 2.7402 4.3240 50 1 8.8897 2.8734 3.6038 51 1 8.6210 0.7140 2.4836 52 1 7.2107 1.7348 2.0966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333724769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:06 Heat of formation + Delta-G solvation = -85.693994 kcal Electronic energy + Delta-G solvation = -31306.022544 eV Core-core repulsion = 27113.918404 eV Total energy + Delta-G solvation = -4192.104140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05471 -39.86609 -38.55029 -37.56026 -35.81270 -34.34185 -32.81323 -32.36253 -30.76103 -30.33616 -28.42432 -27.86522 -27.27427 -26.06577 -24.62824 -23.38341 -22.88548 -21.62238 -20.68359 -20.40685 -19.32746 -17.72934 -17.29844 -16.59429 -16.34028 -16.10862 -15.94726 -15.71611 -15.46311 -14.75491 -14.72679 -14.57493 -14.32922 -14.13921 -13.93688 -13.77835 -13.69165 -13.43683 -13.11141 -12.89639 -12.75841 -12.58158 -12.41540 -12.39772 -12.09459 -11.93017 -11.64242 -11.50582 -11.41934 -11.24424 -11.01459 -10.98945 -10.79256 -10.69492 -10.55168 -10.48013 -10.04521 -9.89574 -9.46553 -9.25067 -8.93530 -8.55309 -8.43929 -7.29111 -6.04243 -4.05743 1.42582 2.29821 3.17376 3.27878 3.30763 3.38271 3.43194 3.52527 4.09251 4.29837 4.38486 4.41552 4.47210 4.88436 4.89220 4.92772 4.95151 5.01709 5.10878 5.13393 5.29121 5.30632 5.31287 5.33408 5.35846 5.47200 5.49121 5.56564 5.63511 5.67922 5.70680 5.77377 5.87916 5.89940 6.00596 6.03589 6.26015 6.34872 6.51802 6.58547 6.66454 6.73914 7.00811 7.24853 7.30832 7.41384 7.75072 7.78002 8.01562 8.04658 8.15228 8.50728 9.02042 9.58738 11.06673 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002318 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.284665 B =12074.449504 C =12686.151671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.103 3.897 4 C -0.182 4.182 5 C -0.179 4.179 6 C 0.157 3.843 7 H 0.105 0.895 8 C -0.164 4.164 9 N -0.690 5.690 10 C 0.513 3.487 11 O -0.507 6.507 12 C 0.502 3.498 13 O -0.536 6.536 14 N -0.569 5.569 15 C 0.113 3.887 16 C 0.042 3.958 17 N -0.537 5.537 18 C 0.193 3.807 19 C -0.507 4.507 20 H 0.065 0.935 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.053 3.947 28 C 0.056 3.944 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.417 0.583 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.026 0.974 46 H 0.031 0.969 47 H -0.009 1.009 48 H 0.261 0.739 49 H 0.022 0.978 50 H 0.098 0.902 51 H 0.073 0.927 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.403 -6.991 -17.051 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.064 3.936 4 C -0.239 4.239 5 C -0.236 4.236 6 C 0.053 3.947 7 H 0.123 0.877 8 C -0.222 4.222 9 N -0.343 5.343 10 C 0.295 3.705 11 O -0.384 6.384 12 C 0.284 3.716 13 O -0.415 6.415 14 N -0.301 5.301 15 C -0.009 4.009 16 C -0.087 4.087 17 N -0.263 5.263 18 C 0.068 3.932 19 C -0.546 4.546 20 H 0.083 0.917 21 C -0.147 4.147 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.076 4.076 28 C -0.065 4.065 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.009 0.991 48 H 0.070 0.930 49 H 0.040 0.960 50 H 0.116 0.884 51 H 0.091 0.909 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.683 -7.234 -17.199 27.856 hybrid contribution -0.245 1.024 0.476 1.156 sum -20.928 -6.210 -16.723 27.499 Atomic orbital electron populations 1.22812 0.81161 1.02854 1.00283 1.87963 1.19791 1.26649 1.95032 1.21768 0.92433 0.84080 0.95354 1.22443 1.02036 1.01344 0.98106 1.22447 1.02192 1.01197 0.97795 1.21099 0.91088 0.97470 0.85026 0.87743 1.22191 1.02222 1.01455 0.96354 1.45793 1.14355 1.45281 1.28915 1.20331 0.82577 0.82392 0.85218 1.90381 1.51447 1.36632 1.59978 1.19897 0.82502 0.84157 0.85023 1.90727 1.53910 1.33069 1.63752 1.48174 1.16676 1.38776 1.26455 1.21930 1.00007 0.94981 0.83978 1.22387 0.94692 0.95296 0.96370 1.62125 1.30631 1.22717 1.10800 1.19730 0.94021 0.89601 0.89840 1.21186 1.12536 1.21250 0.99599 0.91700 1.25001 0.97779 0.97012 0.94880 1.69973 1.40831 1.34887 1.08112 0.86436 0.82334 0.79294 0.79337 1.19579 1.21130 1.21032 1.22349 0.98264 0.95049 0.91981 1.23484 0.94514 0.90004 0.98502 0.93638 0.93702 0.89564 0.90999 0.91717 0.91305 0.90881 0.91607 0.90910 0.91205 0.91732 0.91297 0.74592 0.90308 0.89223 0.89860 0.95559 0.95075 0.99145 0.92971 0.96007 0.88430 0.90875 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.21 101.05 1.03 1.17 16 2 O -0.38 -2.97 9.18 -35.23 -0.32 -3.29 16 3 C 0.10 0.74 0.51 -90.62 -0.05 0.69 16 4 C -0.18 -1.28 8.09 37.16 0.30 -0.97 16 5 C -0.18 -0.95 7.90 37.16 0.29 -0.66 16 6 C 0.16 1.39 1.94 -67.93 -0.13 1.26 16 7 H 0.10 0.97 7.58 -51.93 -0.39 0.57 16 8 C -0.16 -1.37 8.99 37.16 0.33 -1.04 16 9 N -0.69 -7.46 4.35 -54.23 -0.24 -7.69 16 10 C 0.51 6.95 7.77 -11.59 -0.09 6.86 16 11 O -0.51 -7.49 12.70 5.49 0.07 -7.42 16 12 C 0.50 7.78 7.77 -11.59 -0.09 7.69 16 13 O -0.54 -8.96 15.96 5.50 0.09 -8.87 16 14 N -0.57 -9.22 3.01 -172.97 -0.52 -9.74 16 15 C 0.11 1.80 6.59 -3.60 -0.02 1.77 16 16 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 17 N -0.54 -11.57 4.62 -235.76 -1.09 -12.66 16 18 C 0.19 5.01 4.72 -4.98 -0.02 4.98 16 19 C -0.51 -14.10 8.41 -34.44 -0.29 -14.39 16 20 H 0.06 1.78 7.13 -52.49 -0.37 1.41 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 23 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.05 1.03 5.46 -3.70 -0.02 1.01 16 28 C 0.06 0.93 6.36 -3.60 -0.02 0.91 16 29 H 0.05 0.23 6.42 -51.93 -0.33 -0.10 16 30 H 0.04 0.20 6.42 -51.93 -0.33 -0.14 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 34 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 35 H 0.07 0.38 6.43 -51.93 -0.33 0.05 16 36 H 0.06 0.30 6.54 -51.93 -0.34 -0.04 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.61 7.68 -51.93 -0.40 0.21 16 41 H 0.42 4.47 7.48 -40.82 -0.31 4.16 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.34 7.08 -51.93 -0.37 0.98 16 44 H 0.08 1.45 7.99 -51.93 -0.41 1.04 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 47 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 2.04 6.67 -51.93 -0.35 1.70 16 51 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 52 H 0.15 2.39 3.92 -56.54 -0.22 2.17 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -31.64 401.02 -7.72 -39.36 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.57 Total: 2.17 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 1.10 Total: 11.45 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -1.11 Total: -55.98 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.17 Total: -19.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.64 -7.72 -39.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333724769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.331 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds