Wall clock time and date at job start Wed Apr 1 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99612 * 2 1 4 4 C 1.52995 * 109.47260 * 60.00047 * 3 2 1 5 5 C 1.53006 * 109.47282 * 299.99752 * 3 2 1 6 6 C 1.53005 * 109.46899 * 180.02562 * 3 2 1 7 7 H 1.08998 * 109.46713 * 179.97438 * 6 3 2 8 8 C 1.53005 * 109.47149 * 60.00042 * 6 3 2 9 9 N 1.46498 * 109.47202 * 299.99784 * 6 3 2 10 10 C 1.34772 * 120.00161 * 204.99821 * 9 6 3 11 11 O 1.21353 * 119.99990 * 0.02562 * 10 9 6 12 12 C 1.49449 * 120.00114 * 180.02562 * 10 9 6 13 13 O 1.21350 * 120.00033 * 6.48226 * 12 10 9 14 14 N 1.34773 * 119.99910 * 186.48877 * 12 10 9 15 15 C 1.47081 * 120.88084 * 178.47346 * 14 12 10 16 16 C 1.53233 * 108.52124 * 231.20360 * 15 14 12 17 17 N 1.46901 * 109.34128 * 306.16936 * 16 15 14 18 18 C 1.46899 * 111.00203 * 187.25322 * 17 16 15 19 19 C 1.50696 * 109.47352 * 170.00012 * 18 17 16 20 20 H 1.08000 * 120.00034 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00446 * 179.72778 * 19 18 17 22 22 N 1.31517 * 119.99576 * 0.27373 * 21 19 18 23 23 Si 1.86797 * 120.00516 * 180.27555 * 21 19 18 24 24 H 1.48510 * 109.46867 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47099 * 119.99462 * 23 21 19 26 26 H 1.48501 * 109.47302 * 239.99911 * 23 21 19 27 27 C 1.46900 * 111.26915 * 63.10507 * 17 16 15 28 28 C 1.47079 * 120.88474 * 358.48837 * 14 12 10 29 29 H 1.08994 * 109.47100 * 299.99942 * 1 2 3 30 30 H 1.09001 * 109.47507 * 60.00269 * 1 2 3 31 31 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46831 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47048 * 299.99595 * 4 3 2 34 34 H 1.09000 * 109.46877 * 59.99890 * 4 3 2 35 35 H 1.08999 * 109.47239 * 300.00714 * 5 3 2 36 36 H 1.09004 * 109.46301 * 60.00123 * 5 3 2 37 37 H 1.08995 * 109.47037 * 179.97438 * 5 3 2 38 38 H 1.09000 * 109.46966 * 59.99901 * 8 6 3 39 39 H 1.08993 * 109.47022 * 179.97438 * 8 6 3 40 40 H 1.09002 * 109.46757 * 300.00113 * 8 6 3 41 41 H 0.97001 * 119.99442 * 25.00439 * 9 6 3 42 42 H 1.08998 * 109.62892 * 111.49361 * 15 14 12 43 43 H 1.09000 * 109.78778 * 351.00863 * 15 14 12 44 44 H 1.09003 * 109.49384 * 186.20897 * 16 15 14 45 45 H 1.09004 * 109.49298 * 66.12827 * 16 15 14 46 46 H 1.09006 * 109.47178 * 50.00191 * 18 17 16 47 47 H 1.08996 * 109.47238 * 290.00350 * 18 17 16 48 48 H 0.97003 * 119.99886 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.49199 * 56.85635 * 27 17 16 50 50 H 1.09001 * 109.49147 * 176.93938 * 27 17 16 51 51 H 1.08996 * 109.63320 * 248.50744 * 28 14 12 52 52 H 1.09002 * 109.62389 * 9.08805 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2492 5 6 1.5587 2.0648 -1.2493 6 6 3.5354 1.1847 -0.0006 7 1 3.9787 2.1805 -0.0011 8 6 3.9864 0.4257 -1.2503 9 7 3.9682 0.4576 1.1952 10 6 5.2091 0.6459 1.6862 11 8 5.9678 1.4183 1.1380 12 6 5.6508 -0.0963 2.9058 13 8 4.9386 -0.9538 3.3854 14 7 6.8401 0.1868 3.4731 15 6 7.2793 -0.5082 4.6927 16 6 7.7059 0.5415 5.7243 17 7 8.7058 1.4350 5.1243 18 6 9.2670 2.3475 6.1294 19 6 10.4508 3.0732 5.5438 20 1 10.7561 2.8759 4.5268 21 6 11.1412 3.9927 6.3047 22 7 10.7697 4.2326 7.5433 23 14 12.6039 4.8979 5.5763 24 1 12.8154 4.4507 4.1760 25 1 12.3412 6.3593 5.5954 26 1 13.8182 4.6026 6.3785 27 6 8.1419 2.1817 3.9918 28 6 7.7332 1.1991 2.8892 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.0024 3.0604 1.2494 33 1 0.4721 2.1508 1.2492 34 1 1.8804 1.5238 2.1392 35 1 1.8803 1.5238 -2.1393 36 1 0.4721 2.1507 -1.2492 37 1 2.0016 3.0607 -1.2490 38 1 3.6644 0.9668 -2.1400 39 1 5.0730 0.3401 -1.2509 40 1 3.5431 -0.5701 -1.2502 41 1 3.3616 -0.1595 1.6336 42 1 8.1235 -1.1574 4.4604 43 1 6.4591 -1.1036 5.0938 44 1 8.1374 0.0437 6.5927 45 1 6.8368 1.1229 6.0323 46 1 9.5860 1.7761 7.0012 47 1 8.5082 3.0712 6.4271 48 1 11.2552 4.8798 8.0785 49 1 7.2668 2.7402 4.3240 50 1 8.8897 2.8734 3.6038 51 1 8.6210 0.7140 2.4836 52 1 7.2107 1.7348 2.0966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333724769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:05 Heat of formation + Delta-G solvation = -108.799710 kcal Electronic energy + Delta-G solvation = -31307.024483 eV Core-core repulsion = 27113.918404 eV Total energy + Delta-G solvation = -4193.106079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16545 -40.70499 -39.62248 -39.01344 -36.74548 -35.84508 -34.40583 -33.51089 -32.21833 -31.02787 -30.15540 -28.45198 -27.79024 -27.61607 -25.87346 -24.77117 -24.12769 -23.22174 -21.87957 -21.26126 -20.47533 -18.85263 -18.52407 -18.27517 -17.66209 -17.09316 -16.80953 -16.72613 -16.53176 -16.07144 -16.02039 -15.71770 -15.59600 -15.47091 -15.37983 -14.97104 -14.51086 -14.48167 -14.32312 -14.01851 -13.76944 -13.55527 -13.37140 -13.13175 -13.10109 -12.99303 -12.87785 -12.74101 -12.70784 -12.59972 -12.35352 -12.17029 -12.13088 -12.11226 -12.03517 -11.79188 -11.51126 -11.28598 -10.63066 -10.55830 -10.38365 -10.16173 -9.91994 -9.09045 -8.20984 -6.30935 0.25967 1.19844 1.42197 1.42928 1.56679 2.03913 2.33787 2.41375 2.75292 3.11422 3.19634 3.24235 3.50281 3.80306 3.92078 3.95617 4.01202 4.20158 4.27578 4.29043 4.34750 4.40452 4.49075 4.51873 4.54591 4.64048 4.66800 4.68993 4.75244 4.83047 4.83383 4.90637 4.91813 4.94483 4.98329 5.00305 5.12015 5.17104 5.19304 5.26592 5.29738 5.38568 5.45679 5.63992 5.92129 6.01945 6.14430 6.25003 6.27690 6.55024 6.61863 6.84706 6.86834 7.38859 8.90536 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002318 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.284665 B =12074.449504 C =12686.151671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.393 6.393 3 C 0.107 3.893 4 C -0.182 4.182 5 C -0.176 4.176 6 C 0.152 3.848 7 H 0.103 0.897 8 C -0.158 4.158 9 N -0.675 5.675 10 C 0.515 3.485 11 O -0.521 6.521 12 C 0.503 3.497 13 O -0.547 6.547 14 N -0.576 5.576 15 C 0.121 3.879 16 C 0.042 3.958 17 N -0.541 5.541 18 C 0.208 3.792 19 C -0.521 4.521 20 H 0.066 0.934 21 C 0.000 4.000 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.056 3.944 28 C 0.072 3.928 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.418 0.582 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.018 0.982 46 H 0.008 0.992 47 H -0.041 1.041 48 H 0.264 0.736 49 H 0.011 0.989 50 H 0.083 0.917 51 H 0.077 0.923 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.188 -7.135 -19.184 30.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.313 6.313 3 C 0.068 3.932 4 C -0.239 4.239 5 C -0.234 4.234 6 C 0.048 3.952 7 H 0.120 0.880 8 C -0.216 4.216 9 N -0.327 5.327 10 C 0.296 3.704 11 O -0.400 6.400 12 C 0.286 3.714 13 O -0.426 6.426 14 N -0.308 5.308 15 C -0.001 4.001 16 C -0.087 4.087 17 N -0.266 5.266 18 C 0.082 3.918 19 C -0.559 4.559 20 H 0.085 0.915 21 C -0.197 4.197 22 N -0.576 5.576 23 Si 0.795 3.205 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.073 4.073 28 C -0.049 4.049 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.256 0.744 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.036 0.964 46 H 0.027 0.973 47 H -0.023 1.023 48 H 0.073 0.927 49 H 0.030 0.970 50 H 0.101 0.899 51 H 0.096 0.904 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.515 -7.404 -19.358 29.874 hybrid contribution -0.130 1.017 1.155 1.544 sum -21.645 -6.387 -18.204 28.994 Atomic orbital electron populations 1.22963 0.79943 1.03602 1.01096 1.87933 1.21165 1.27004 1.95197 1.21726 0.91011 0.84206 0.96299 1.22448 1.02989 1.01092 0.97400 1.22440 1.03014 1.01217 0.96716 1.21334 0.92603 0.97061 0.84185 0.87962 1.22141 1.01084 1.01474 0.96912 1.45814 1.13184 1.44650 1.29070 1.19986 0.83376 0.82333 0.84696 1.90351 1.52011 1.37394 1.60226 1.20228 0.81867 0.83919 0.85413 1.90718 1.54019 1.33587 1.64296 1.48213 1.17055 1.38851 1.26696 1.21862 1.00840 0.94068 0.83300 1.22458 0.93531 0.95170 0.97498 1.62062 1.32340 1.21993 1.10213 1.19387 0.93099 0.89180 0.90147 1.21478 1.13090 1.21646 0.99731 0.91550 1.25930 1.00782 0.97841 0.95193 1.70098 1.42304 1.35645 1.09535 0.85314 0.78406 0.77899 0.78883 1.18502 1.20513 1.20494 1.22329 0.97217 0.95641 0.92121 1.23347 0.94898 0.89522 0.97140 0.93289 0.92379 0.88975 0.90899 0.90336 0.92910 0.90563 0.90435 0.90256 0.89116 0.93294 0.91707 0.74405 0.89224 0.87946 0.89281 0.96405 0.97348 1.02297 0.92704 0.97039 0.89898 0.90434 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.21 113.37 1.16 1.33 16 2 O -0.39 -5.53 9.18 -148.98 -1.37 -6.90 16 3 C 0.11 1.33 0.51 -10.79 -0.01 1.33 16 4 C -0.18 -2.29 8.09 71.98 0.58 -1.70 16 5 C -0.18 -1.44 7.90 71.98 0.57 -0.87 16 6 C 0.15 2.47 1.94 45.00 0.09 2.55 16 7 H 0.10 1.75 7.58 -2.39 -0.02 1.74 16 8 C -0.16 -2.41 8.99 71.98 0.65 -1.76 16 9 N -0.68 -13.94 4.35 -443.86 -1.93 -15.87 16 10 C 0.51 13.49 7.77 87.27 0.68 14.17 16 11 O -0.52 -14.90 12.70 -3.25 -0.04 -14.94 16 12 C 0.50 15.09 7.77 87.27 0.68 15.77 16 13 O -0.55 -17.67 15.96 -3.25 -0.05 -17.72 16 14 N -0.58 -18.17 3.01 -819.53 -2.47 -20.64 16 15 C 0.12 3.73 6.59 86.35 0.57 4.30 16 16 C 0.04 1.56 5.62 86.38 0.49 2.04 16 17 N -0.54 -23.71 4.62 -899.82 -4.16 -27.86 16 18 C 0.21 11.18 4.72 85.56 0.40 11.59 16 19 C -0.52 -29.47 8.41 25.60 0.22 -29.26 16 20 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 21 C 0.00 0.03 5.46 84.65 0.46 0.49 16 22 N -0.94 -56.46 13.29 21.45 0.28 -56.18 16 23 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 27 C 0.06 2.22 5.46 86.38 0.47 2.70 16 28 C 0.07 2.35 6.36 86.35 0.55 2.90 16 29 H 0.05 0.40 6.42 -2.39 -0.02 0.38 16 30 H 0.06 0.36 6.42 -2.39 -0.02 0.35 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.76 6.54 -2.39 -0.02 0.74 16 34 H 0.05 0.83 7.45 -2.39 -0.02 0.81 16 35 H 0.08 0.59 6.43 -2.39 -0.02 0.57 16 36 H 0.08 0.47 6.54 -2.39 -0.02 0.46 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.99 6.43 -2.39 -0.02 0.98 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.05 7.68 -2.39 -0.02 1.03 16 41 H 0.42 8.58 7.48 -92.71 -0.69 7.88 16 42 H 0.09 2.59 8.14 -2.39 -0.02 2.58 16 43 H 0.10 2.93 7.08 -2.39 -0.02 2.91 16 44 H 0.09 3.14 7.99 -2.39 -0.02 3.12 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.01 0.48 7.97 -2.38 -0.02 0.47 16 47 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 48 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 49 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 50 H 0.08 3.53 6.67 -2.39 -0.02 3.52 16 51 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 52 H 0.16 4.97 3.92 -75.35 -0.30 4.68 16 Total: -1.00 -68.00 401.02 -0.20 -68.21 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.05 Total: 20.04 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 7.55 Total: 25.57 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -8.27 Total: -120.55 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.46 Total: -39.56 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -68.00 -0.20 -68.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333724769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.591 kcal (2) G-P(sol) polarization free energy of solvation -68.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds