Wall clock time and date at job start Wed Apr 1 2020 00:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47175 * 2 1 4 4 O 1.21282 * 120.00002 * 5.07566 * 3 2 1 5 5 N 1.34770 * 119.99988 * 185.07714 * 3 2 1 6 6 C 1.46503 * 120.00045 * 184.72996 * 5 3 2 7 7 C 1.53002 * 109.47344 * 175.31143 * 6 5 3 8 8 H 1.08994 * 109.50925 * 186.04475 * 7 6 5 9 9 C 1.53100 * 109.50651 * 65.95103 * 7 6 5 10 10 O 1.43018 * 109.25974 * 183.21516 * 9 7 6 11 11 C 1.43018 * 113.73457 * 58.67641 * 10 9 7 12 12 C 1.53097 * 109.25680 * 301.32632 * 11 10 9 13 13 N 1.47015 * 109.25768 * 56.85302 * 12 11 10 14 14 C 1.46907 * 110.99991 * 177.60609 * 13 12 11 15 15 C 1.50701 * 109.46844 * 287.15187 * 14 13 12 16 16 O 1.21280 * 119.99985 * 4.11559 * 15 14 13 17 17 N 1.34776 * 119.99471 * 184.11443 * 15 14 13 18 18 C 1.46501 * 120.00442 * 5.00888 * 17 15 14 19 19 C 1.52999 * 109.47110 * 94.74331 * 18 17 15 20 20 C 1.46503 * 119.99837 * 185.00305 * 17 15 14 21 21 C 1.50704 * 109.46804 * 90.00164 * 20 17 15 22 22 H 1.07998 * 119.99760 * 359.97438 * 21 20 17 23 23 C 1.37875 * 119.99734 * 180.02562 * 21 20 17 24 24 N 1.31517 * 120.00176 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00010 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47318 * 59.99152 * 25 23 21 27 27 H 1.48491 * 109.47472 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46869 * 299.99825 * 25 23 21 29 29 H 1.09004 * 109.47079 * 59.99782 * 1 2 3 30 30 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47103 * 300.00214 * 1 2 3 32 32 H 1.09003 * 109.47333 * 239.99884 * 2 1 3 33 33 H 1.08997 * 109.46814 * 120.00501 * 2 1 3 34 34 H 0.97005 * 120.00054 * 5.00075 * 5 3 2 35 35 H 1.09002 * 109.47017 * 295.31129 * 6 5 3 36 36 H 1.09003 * 109.47261 * 55.31267 * 6 5 3 37 37 H 1.09002 * 109.50844 * 303.15743 * 9 7 6 38 38 H 1.09005 * 109.50582 * 63.28325 * 9 7 6 39 39 H 1.09003 * 109.50630 * 61.25987 * 11 10 9 40 40 H 1.08996 * 109.50317 * 181.35037 * 11 10 9 41 41 H 1.09002 * 109.50468 * 176.78510 * 12 11 10 42 42 H 1.08999 * 109.50763 * 296.87049 * 12 11 10 43 43 H 1.08993 * 109.46830 * 47.15125 * 14 13 12 44 44 H 1.09001 * 109.46749 * 167.14890 * 14 13 12 45 45 H 1.09001 * 109.47037 * 214.74683 * 18 17 15 46 46 H 1.09003 * 109.46928 * 334.74699 * 18 17 15 47 47 H 1.08995 * 109.47473 * 305.00559 * 19 18 17 48 48 H 1.08996 * 109.46675 * 65.01147 * 19 18 17 49 49 H 1.09003 * 109.46927 * 185.00383 * 19 18 17 50 50 H 1.08997 * 109.47353 * 210.00446 * 20 17 15 51 51 H 1.09001 * 109.47165 * 330.00436 * 20 17 15 52 52 H 0.97006 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2481 2.3413 0.0929 5 7 3.3530 1.6686 -0.1033 6 6 3.8509 3.0425 0.0007 7 6 5.3805 3.0346 -0.0326 8 1 5.7539 4.0418 0.1521 9 6 5.8595 2.5555 -1.4056 10 8 7.2876 2.4784 -1.4065 11 6 7.8173 1.5996 -0.4103 12 6 7.3583 2.0690 0.9727 13 7 5.8895 2.1239 1.0033 14 6 5.4048 2.5163 2.3334 15 6 5.5934 1.3712 3.2947 16 8 6.1508 0.3580 2.9291 17 7 5.1426 1.4730 4.5608 18 6 4.3735 2.6501 4.9721 19 6 2.8782 2.3522 4.8451 20 6 5.4216 0.4065 5.5257 21 6 6.7209 0.6958 6.2324 22 1 7.2827 1.5849 5.9870 23 6 7.1927 -0.1751 7.1914 24 7 6.5087 -1.2581 7.4899 25 14 8.8028 0.1838 8.0680 26 1 8.6992 1.4818 8.7818 27 1 9.0857 -0.8972 9.0459 28 1 9.9033 0.2525 7.0732 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9736 0.9377 -0.2504 35 1 3.4723 3.6304 -0.8354 36 1 3.5102 3.4825 0.9380 37 1 5.4416 1.5704 -1.6135 38 1 5.5325 3.2592 -2.1711 39 1 7.4564 0.5868 -0.5893 40 1 8.9063 1.6115 -0.4565 41 1 7.7122 1.3698 1.7304 42 1 7.7645 3.0602 1.1741 43 1 5.9672 3.3816 2.6843 44 1 4.3465 2.7705 2.2741 45 1 4.6088 2.8939 6.0081 46 1 4.6314 3.4943 4.3326 47 1 2.6583 2.0224 3.8298 48 1 2.6030 1.5674 5.5497 49 1 2.3079 3.2546 5.0655 50 1 4.6140 0.3568 6.2559 51 1 5.4972 -0.5465 5.0021 52 1 6.8406 -1.8706 8.1649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001368426788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:26 Heat of formation + Delta-G solvation = -133.393468 kcal Electronic energy + Delta-G solvation = -32276.363003 eV Core-core repulsion = 28082.190458 eV Total energy + Delta-G solvation = -4194.172544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54453 -40.54882 -39.98196 -37.23250 -36.84670 -35.43520 -34.88098 -33.72743 -32.26979 -31.66712 -30.77045 -28.92555 -27.83279 -26.23241 -25.10492 -24.62310 -23.87340 -23.45290 -21.41788 -20.84943 -19.89490 -18.61471 -18.35147 -18.04981 -17.61404 -17.40525 -17.05378 -16.75759 -16.51311 -16.42792 -16.14320 -15.79427 -15.49603 -15.29418 -14.75191 -14.70544 -14.66234 -14.60132 -14.31628 -14.15189 -13.73693 -13.57066 -13.29760 -13.18029 -13.13131 -13.02567 -12.88563 -12.67686 -12.61846 -12.52433 -12.40378 -12.21307 -12.12797 -12.02794 -11.93131 -11.72769 -11.51271 -10.89647 -10.80727 -10.63985 -10.42736 -9.98480 -9.43490 -9.39923 -8.21910 -6.37121 1.36452 1.39682 1.47254 1.69172 1.86408 2.09779 2.32979 2.41078 2.79648 2.88753 3.07550 3.61370 3.65094 3.68543 3.90018 3.98638 4.07361 4.12385 4.15602 4.22718 4.24701 4.26722 4.29327 4.37305 4.44162 4.55179 4.62521 4.66188 4.74092 4.74910 4.82543 4.86631 4.90738 4.94848 4.98763 5.00698 5.04957 5.07260 5.22224 5.31485 5.32578 5.48953 5.57697 5.71704 5.86830 5.91917 6.07176 6.13856 6.59723 6.70944 6.83192 7.29243 7.29402 7.53283 8.84664 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.003724 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.301223 B = 7516.491859 C = 9223.678587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.145 4.145 3 C 0.509 3.491 4 O -0.585 6.585 5 N -0.713 5.713 6 C 0.128 3.872 7 C 0.041 3.959 8 H 0.078 0.922 9 C 0.070 3.930 10 O -0.393 6.393 11 C 0.072 3.928 12 C 0.022 3.978 13 N -0.520 5.520 14 C 0.047 3.953 15 C 0.503 3.497 16 O -0.572 6.572 17 N -0.606 5.606 18 C 0.102 3.898 19 C -0.157 4.157 20 C 0.267 3.733 21 C -0.543 4.543 22 H 0.053 0.947 23 C 0.010 3.990 24 N -0.928 5.928 25 Si 0.965 3.035 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.276 1.276 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.047 0.953 48 H 0.040 0.960 49 H 0.092 0.908 50 H 0.016 0.984 51 H -0.002 1.002 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 9.766 -17.855 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.185 4.185 3 C 0.297 3.703 4 O -0.465 6.465 5 N -0.365 5.365 6 C 0.004 3.996 7 C -0.068 4.068 8 H 0.096 0.904 9 C -0.007 4.007 10 O -0.311 6.311 11 C -0.005 4.005 12 C -0.106 4.106 13 N -0.246 5.246 14 C -0.084 4.084 15 C 0.291 3.709 16 O -0.451 6.451 17 N -0.338 5.338 18 C -0.021 4.021 19 C -0.216 4.216 20 C 0.145 3.855 21 C -0.581 4.581 22 H 0.071 0.929 23 C -0.189 4.189 24 N -0.567 5.567 25 Si 0.789 3.211 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.201 1.201 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.249 0.751 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.090 0.910 46 H 0.115 0.885 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.111 0.889 50 H 0.034 0.966 51 H 0.016 0.984 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.227 9.377 -18.067 21.287 hybrid contribution 1.240 -0.040 1.485 1.935 sum -4.987 9.336 -16.583 19.673 Atomic orbital electron populations 1.21497 0.93155 1.02382 1.02048 1.21678 0.98474 0.92624 1.05675 1.21174 0.82025 0.92377 0.74756 1.90665 1.56348 1.47849 1.51681 1.45935 1.07451 1.10134 1.72996 1.21377 0.91284 0.84117 1.02824 1.22693 0.94428 0.96268 0.93386 0.90416 1.22832 0.80531 1.02389 0.94936 1.87979 1.21177 1.66495 1.55480 1.22631 0.99668 0.93129 0.85043 1.22799 0.87178 1.00793 0.99824 1.61755 1.09609 1.50485 1.02733 1.22012 1.03327 0.94429 0.88609 1.20962 0.78275 0.89165 0.82475 1.90606 1.44089 1.33072 1.77322 1.48241 1.53264 1.22053 1.10271 1.21675 0.91292 0.87207 1.01887 1.22096 0.95500 1.02729 1.01231 1.18626 0.94864 0.85750 0.86230 1.21673 1.07394 1.08088 1.20965 0.92852 1.25827 1.00986 0.94527 0.97598 1.70051 1.40552 1.12913 1.33212 0.85507 0.79107 0.78333 0.78105 1.18685 1.20490 1.20117 0.92620 0.90302 0.93722 0.86696 0.88718 0.75100 0.89283 0.91615 0.91998 0.85887 0.92442 0.87093 0.91021 0.93724 0.90561 0.86579 0.90970 0.88495 0.93384 0.94039 0.88929 0.96595 0.98351 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.22 71.98 0.66 -1.75 16 2 C -0.14 -2.59 6.42 29.85 0.19 -2.40 16 3 C 0.51 11.54 7.82 87.66 0.69 12.23 16 4 O -0.58 -17.28 15.99 -3.04 -0.05 -17.33 16 5 N -0.71 -13.70 5.11 -463.05 -2.37 -16.07 16 6 C 0.13 2.21 4.72 86.38 0.41 2.62 16 7 C 0.04 0.70 2.25 44.93 0.10 0.80 16 8 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 9 C 0.07 1.11 6.20 72.02 0.45 1.55 16 10 O -0.39 -8.11 10.83 -148.98 -1.61 -9.72 16 11 C 0.07 1.57 7.01 72.01 0.50 2.08 16 12 C 0.02 0.57 5.30 86.31 0.46 1.03 16 13 N -0.52 -12.57 3.64 -874.52 -3.18 -15.76 16 14 C 0.05 1.26 3.70 85.56 0.32 1.58 16 15 C 0.50 19.85 7.46 87.66 0.65 20.50 16 16 O -0.57 -27.57 14.27 -3.03 -0.04 -27.61 16 17 N -0.61 -25.07 2.46 -826.13 -2.03 -27.10 16 18 C 0.10 3.13 5.96 86.38 0.51 3.65 16 19 C -0.16 -4.24 10.24 71.98 0.74 -3.50 16 20 C 0.27 14.23 5.22 85.63 0.45 14.68 16 21 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 22 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 23 C 0.01 0.56 5.46 84.65 0.46 1.02 16 24 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 25 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 29 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.04 0.96 8.04 -2.39 -0.02 0.94 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.41 7.67 7.28 -92.70 -0.68 7.00 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.26 6.38 -2.39 -0.02 1.24 16 37 H 0.06 0.96 7.08 -2.39 -0.02 0.94 16 38 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.44 6.33 -2.39 -0.02 2.43 16 42 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.85 7.70 -2.39 -0.02 1.83 16 44 H 0.12 2.75 5.32 -2.39 -0.01 2.74 16 45 H 0.07 2.35 8.11 -2.39 -0.02 2.33 16 46 H 0.10 2.28 6.33 -2.39 -0.02 2.27 16 47 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 51 H 0.00 -0.10 7.36 -2.39 -0.02 -0.12 16 52 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -75.77 412.77 0.09 -75.69 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.23 Total: 23.54 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 6.83 Total: 23.54 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -7.30 Total: -114.40 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -1.70 Total: -54.66 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -75.77 0.09 -75.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001368426788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.708 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds