Wall clock time and date at job start Wed Apr 1 2020 00:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47250 * 2 1 4 4 O 1.21273 * 119.99967 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99639 * 180.02562 * 3 2 1 6 6 C 1.46497 * 119.99279 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46917 * 175.59977 * 6 5 3 8 8 H 1.09002 * 109.50608 * 173.87241 * 7 6 5 9 9 C 1.53096 * 109.50606 * 293.96283 * 7 6 5 10 10 O 1.43016 * 109.25994 * 176.78333 * 9 7 6 11 11 C 1.43013 * 113.73460 * 301.32662 * 10 9 7 12 12 C 1.53104 * 109.25928 * 58.67351 * 11 10 9 13 13 N 1.47017 * 109.29064 * 303.12770 * 12 11 10 14 14 C 1.46900 * 110.99684 * 182.41358 * 13 12 11 15 15 C 1.50708 * 109.47198 * 75.73195 * 14 13 12 16 16 O 1.21288 * 119.99647 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99879 * 179.97438 * 15 14 13 18 18 C 1.46499 * 120.00179 * 359.97438 * 17 15 14 19 19 C 1.52999 * 109.47010 * 89.99905 * 18 17 15 20 20 C 1.46497 * 119.99400 * 179.97438 * 17 15 14 21 21 C 1.50701 * 109.47208 * 90.00325 * 20 17 15 22 22 H 1.07995 * 119.99859 * 359.97438 * 21 20 17 23 23 C 1.37877 * 119.99849 * 179.97438 * 21 20 17 24 24 N 1.31509 * 120.00398 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99634 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47269 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46859 * 120.00106 * 25 23 21 28 28 H 1.48504 * 109.47237 * 240.00005 * 25 23 21 29 29 H 1.09000 * 109.46789 * 59.99874 * 1 2 3 30 30 H 1.08992 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47055 * 300.00122 * 1 2 3 32 32 H 1.09002 * 109.47055 * 239.99878 * 2 1 3 33 33 H 1.08996 * 109.47095 * 119.99754 * 2 1 3 34 34 H 0.96996 * 120.00450 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47851 * 55.59760 * 6 5 3 36 36 H 1.09002 * 109.47151 * 295.59336 * 6 5 3 37 37 H 1.09000 * 109.50293 * 56.84534 * 9 7 6 38 38 H 1.09006 * 109.50581 * 296.71817 * 9 7 6 39 39 H 1.08999 * 109.51274 * 298.73847 * 11 10 9 40 40 H 1.09003 * 109.54188 * 178.62221 * 11 10 9 41 41 H 1.08997 * 109.50887 * 63.08168 * 12 11 10 42 42 H 1.09000 * 109.50450 * 183.16843 * 12 11 10 43 43 H 1.08996 * 109.46665 * 195.72628 * 14 13 12 44 44 H 1.08994 * 109.47364 * 315.73029 * 14 13 12 45 45 H 1.09002 * 109.46806 * 210.00099 * 18 17 15 46 46 H 1.09000 * 109.46783 * 330.00292 * 18 17 15 47 47 H 1.08993 * 109.46993 * 179.97438 * 19 18 17 48 48 H 1.09000 * 109.47036 * 300.00022 * 19 18 17 49 49 H 1.09003 * 109.47198 * 60.00025 * 19 18 17 50 50 H 1.09006 * 109.47000 * 209.99681 * 20 17 15 51 51 H 1.08999 * 109.47614 * 329.99958 * 20 17 15 52 52 H 0.97001 * 120.00307 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0482 0.0000 7 6 5.3719 3.0496 0.1100 8 1 5.7437 4.0684 0.0012 9 6 5.7865 2.4971 1.4762 10 8 7.2135 2.4304 1.5449 11 6 7.8011 1.6134 0.5288 12 6 7.4069 2.1569 -0.8471 13 7 5.9411 2.2027 -0.9496 14 6 5.5205 2.6658 -2.2787 15 6 5.7030 1.5537 -3.2792 16 8 6.1409 0.4810 -2.9204 17 7 5.3797 1.7511 -4.5727 18 6 4.8503 3.0466 -5.0059 19 6 6.0074 3.9571 -5.4218 20 6 5.5577 0.6702 -5.5453 21 6 4.2975 -0.1530 -5.6177 22 1 3.4491 0.1031 -5.0006 23 6 4.2278 -1.2332 -6.4718 24 7 5.2612 -1.5454 -7.2228 25 14 2.6659 -2.2540 -6.5609 26 1 1.6577 -1.6993 -5.6222 27 1 2.1276 -2.2151 -7.9444 28 1 2.9706 -3.6587 -6.1876 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9878 0.9298 -0.0005 35 1 3.4200 3.5839 0.8484 36 1 3.5479 3.5393 -0.9264 37 1 5.3688 1.4988 1.6071 38 1 5.4145 3.1540 2.2626 39 1 7.4420 0.5894 0.6321 40 1 8.8863 1.6304 0.6296 41 1 7.8120 3.1612 -0.9714 42 1 7.8060 1.5048 -1.6240 43 1 4.4706 2.9568 -2.2465 44 1 6.1262 3.5227 -2.5734 45 1 4.1804 2.9003 -5.8532 46 1 4.3021 3.5081 -4.1845 47 1 5.6136 4.9207 -5.7446 48 1 6.6774 4.1033 -4.5745 49 1 6.5558 3.4956 -6.2431 50 1 5.7707 1.0954 -6.5261 51 1 6.3886 0.0361 -5.2359 52 1 5.2120 -2.3051 -7.8240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001368426790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:31 Heat of formation + Delta-G solvation = -108.797919 kcal Electronic energy + Delta-G solvation = -32321.797060 eV Core-core repulsion = 28128.691058 eV Total energy + Delta-G solvation = -4193.106001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49458 -39.35776 -38.72793 -36.20351 -35.30631 -34.38478 -32.82962 -32.78482 -31.39199 -30.15639 -29.52845 -27.36821 -26.76606 -24.92864 -24.20710 -23.05667 -22.59718 -22.30265 -20.45944 -19.89165 -18.41802 -17.27315 -17.05115 -16.63374 -16.41317 -16.17997 -15.87461 -15.59936 -15.38983 -15.14463 -14.90449 -14.49880 -14.33018 -13.97291 -13.80524 -13.66083 -13.55115 -13.38127 -12.95394 -12.72007 -12.46977 -12.29892 -12.21342 -12.04238 -11.84450 -11.73031 -11.64127 -11.51290 -11.24747 -11.14520 -11.13405 -10.92707 -10.74810 -10.68779 -10.55054 -10.14674 -9.89414 -9.79694 -9.62773 -9.02089 -8.97160 -8.45808 -8.37949 -7.67283 -6.06411 -4.10824 2.71474 3.14602 3.27936 3.34532 3.36940 3.42361 3.48195 3.67268 4.06545 4.43190 4.46964 4.54470 4.77823 4.82811 4.90111 5.06784 5.10180 5.13183 5.14132 5.16314 5.23340 5.28806 5.31563 5.35756 5.43542 5.52799 5.56413 5.59035 5.59504 5.70094 5.72342 5.82510 5.83284 5.84592 5.96270 5.97864 6.18782 6.20039 6.41671 6.42887 6.71391 6.81047 6.97582 7.07893 7.41482 7.53530 7.57763 7.90388 8.21759 8.28848 8.41023 8.89265 9.10016 9.54601 11.01640 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.004438 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.942072 B = 6307.691076 C = 8216.256017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C 0.513 3.487 4 O -0.551 6.551 5 N -0.719 5.719 6 C 0.127 3.873 7 C 0.033 3.967 8 H 0.066 0.934 9 C 0.073 3.927 10 O -0.386 6.386 11 C 0.065 3.935 12 C 0.022 3.978 13 N -0.511 5.511 14 C 0.029 3.971 15 C 0.509 3.491 16 O -0.524 6.524 17 N -0.598 5.598 18 C 0.106 3.894 19 C -0.168 4.168 20 C 0.249 3.751 21 C -0.523 4.523 22 H 0.057 0.943 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.896 3.104 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.412 0.588 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.048 0.952 49 H 0.061 0.939 50 H 0.030 0.970 51 H 0.042 0.958 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 10.222 15.070 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 C 0.301 3.699 4 O -0.429 6.429 5 N -0.373 5.373 6 C 0.002 3.998 7 C -0.076 4.076 8 H 0.083 0.917 9 C -0.005 4.005 10 O -0.304 6.304 11 C -0.012 4.012 12 C -0.106 4.106 13 N -0.237 5.237 14 C -0.101 4.101 15 C 0.294 3.706 16 O -0.400 6.400 17 N -0.331 5.331 18 C -0.018 4.018 19 C -0.226 4.226 20 C 0.129 3.871 21 C -0.562 4.562 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.534 5.534 25 Si 0.723 3.277 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.209 1.209 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.249 0.751 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.048 0.952 51 H 0.060 0.940 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.221 9.787 15.311 18.174 hybrid contribution -0.359 -0.143 -0.762 0.854 sum -0.138 9.644 14.549 17.456 Atomic orbital electron populations 1.21504 0.93162 1.01503 1.03064 1.21639 0.98509 0.93845 1.04726 1.20795 0.81977 0.91911 0.75266 1.90670 1.55490 1.46644 1.50071 1.45946 1.07297 1.08822 1.75236 1.21313 0.91535 0.84448 1.02484 1.22673 0.94475 0.96738 0.93689 0.91659 1.22648 0.81579 1.01342 0.94910 1.87974 1.19537 1.70428 1.52483 1.22694 0.98298 0.94514 0.85722 1.22852 0.87260 1.00755 0.99691 1.61786 1.09588 1.50797 1.01515 1.22222 1.02463 0.96501 0.88955 1.20031 0.79152 0.88663 0.82715 1.90650 1.44906 1.26250 1.78214 1.48255 1.62658 1.13785 1.08438 1.21396 0.95714 0.84153 1.00538 1.22215 0.99353 0.99333 1.01748 1.19240 0.97826 0.84012 0.85976 1.21452 0.99538 1.12408 1.22776 0.92512 1.24920 0.96561 0.97116 0.95443 1.69937 1.29668 1.28304 1.25527 0.86480 0.83222 0.80237 0.77715 1.19781 1.20997 1.20877 0.91978 0.92165 0.92287 0.88353 0.89097 0.75103 0.90512 0.91324 0.92087 0.88385 0.91757 0.88409 0.94358 0.88073 0.88155 0.92230 0.89896 0.92115 0.92170 0.93334 0.91958 0.95177 0.93974 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.20 37.16 0.34 -1.18 16 2 C -0.15 -1.68 6.42 -27.88 -0.18 -1.86 16 3 C 0.51 6.97 7.83 -10.98 -0.09 6.88 16 4 O -0.55 -9.18 15.98 5.56 0.09 -9.09 16 5 N -0.72 -8.59 5.05 -60.29 -0.30 -8.89 16 6 C 0.13 1.36 4.73 -4.04 -0.02 1.34 16 7 C 0.03 0.34 2.26 -67.55 -0.15 0.19 16 8 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 9 C 0.07 0.70 6.21 37.21 0.23 0.93 16 10 O -0.39 -4.36 10.83 -35.23 -0.38 -4.74 16 11 C 0.06 0.70 7.01 37.21 0.26 0.96 16 12 C 0.02 0.27 5.31 -3.71 -0.02 0.25 16 13 N -0.51 -6.49 3.43 -227.70 -0.78 -7.27 16 14 C 0.03 0.41 3.89 -4.97 -0.02 0.39 16 15 C 0.51 9.84 7.42 -10.98 -0.08 9.76 16 16 O -0.52 -12.13 14.72 5.55 0.08 -12.05 16 17 N -0.60 -12.06 2.46 -175.05 -0.43 -12.49 16 18 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 19 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 20 C 0.25 6.30 5.16 -5.19 -0.03 6.28 16 21 C -0.52 -14.51 9.39 -34.44 -0.32 -14.84 16 22 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 25 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 29 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.41 4.92 7.43 -40.82 -0.30 4.62 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16 37 H 0.06 0.59 7.29 -51.93 -0.38 0.21 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.44 8.13 -51.93 -0.42 0.02 16 42 H 0.10 1.49 6.74 -51.93 -0.35 1.14 16 43 H 0.10 1.36 4.82 -51.93 -0.25 1.11 16 44 H 0.06 0.74 7.03 -51.93 -0.37 0.37 16 45 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 46 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 51 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 52 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 411.81 15.07 6.21 6.21 Total: -1.00 -33.78 411.81 -8.56 -42.34 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.95 Total: 4.30 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 0.19 Total: 10.58 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.78 Total: -54.15 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.21 Total: -25.88 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.78 -8.56 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001368426790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.456 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds