Wall clock time and date at job start Wed Apr 1 2020 00:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47250 * 2 1 4 4 O 1.21273 * 119.99967 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99639 * 180.02562 * 3 2 1 6 6 C 1.46497 * 119.99279 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46917 * 175.59977 * 6 5 3 8 8 H 1.09002 * 109.50608 * 173.87241 * 7 6 5 9 9 C 1.53096 * 109.50606 * 293.96283 * 7 6 5 10 10 O 1.43016 * 109.25994 * 176.78333 * 9 7 6 11 11 C 1.43013 * 113.73460 * 301.32662 * 10 9 7 12 12 C 1.53104 * 109.25928 * 58.67351 * 11 10 9 13 13 N 1.47017 * 109.29064 * 303.12770 * 12 11 10 14 14 C 1.46900 * 110.99684 * 182.41358 * 13 12 11 15 15 C 1.50708 * 109.47198 * 75.73195 * 14 13 12 16 16 O 1.21288 * 119.99647 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99879 * 179.97438 * 15 14 13 18 18 C 1.46499 * 120.00179 * 359.97438 * 17 15 14 19 19 C 1.52999 * 109.47010 * 89.99905 * 18 17 15 20 20 C 1.46497 * 119.99400 * 179.97438 * 17 15 14 21 21 C 1.50701 * 109.47208 * 90.00325 * 20 17 15 22 22 H 1.07995 * 119.99859 * 359.97438 * 21 20 17 23 23 C 1.37877 * 119.99849 * 179.97438 * 21 20 17 24 24 N 1.31509 * 120.00398 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99634 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47269 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46859 * 120.00106 * 25 23 21 28 28 H 1.48504 * 109.47237 * 240.00005 * 25 23 21 29 29 H 1.09000 * 109.46789 * 59.99874 * 1 2 3 30 30 H 1.08992 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47055 * 300.00122 * 1 2 3 32 32 H 1.09002 * 109.47055 * 239.99878 * 2 1 3 33 33 H 1.08996 * 109.47095 * 119.99754 * 2 1 3 34 34 H 0.96996 * 120.00450 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47851 * 55.59760 * 6 5 3 36 36 H 1.09002 * 109.47151 * 295.59336 * 6 5 3 37 37 H 1.09000 * 109.50293 * 56.84534 * 9 7 6 38 38 H 1.09006 * 109.50581 * 296.71817 * 9 7 6 39 39 H 1.08999 * 109.51274 * 298.73847 * 11 10 9 40 40 H 1.09003 * 109.54188 * 178.62221 * 11 10 9 41 41 H 1.08997 * 109.50887 * 63.08168 * 12 11 10 42 42 H 1.09000 * 109.50450 * 183.16843 * 12 11 10 43 43 H 1.08996 * 109.46665 * 195.72628 * 14 13 12 44 44 H 1.08994 * 109.47364 * 315.73029 * 14 13 12 45 45 H 1.09002 * 109.46806 * 210.00099 * 18 17 15 46 46 H 1.09000 * 109.46783 * 330.00292 * 18 17 15 47 47 H 1.08993 * 109.46993 * 179.97438 * 19 18 17 48 48 H 1.09000 * 109.47036 * 300.00022 * 19 18 17 49 49 H 1.09003 * 109.47198 * 60.00025 * 19 18 17 50 50 H 1.09006 * 109.47000 * 209.99681 * 20 17 15 51 51 H 1.08999 * 109.47614 * 329.99958 * 20 17 15 52 52 H 0.97001 * 120.00307 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0482 0.0000 7 6 5.3719 3.0496 0.1100 8 1 5.7437 4.0684 0.0012 9 6 5.7865 2.4971 1.4762 10 8 7.2135 2.4304 1.5449 11 6 7.8011 1.6134 0.5288 12 6 7.4069 2.1569 -0.8471 13 7 5.9411 2.2027 -0.9496 14 6 5.5205 2.6658 -2.2787 15 6 5.7030 1.5537 -3.2792 16 8 6.1409 0.4810 -2.9204 17 7 5.3797 1.7511 -4.5727 18 6 4.8503 3.0466 -5.0059 19 6 6.0074 3.9571 -5.4218 20 6 5.5577 0.6702 -5.5453 21 6 4.2975 -0.1530 -5.6177 22 1 3.4491 0.1031 -5.0006 23 6 4.2278 -1.2332 -6.4718 24 7 5.2612 -1.5454 -7.2228 25 14 2.6659 -2.2540 -6.5609 26 1 1.6577 -1.6993 -5.6222 27 1 2.1276 -2.2151 -7.9444 28 1 2.9706 -3.6587 -6.1876 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9878 0.9298 -0.0005 35 1 3.4200 3.5839 0.8484 36 1 3.5479 3.5393 -0.9264 37 1 5.3688 1.4988 1.6071 38 1 5.4145 3.1540 2.2626 39 1 7.4420 0.5894 0.6321 40 1 8.8863 1.6304 0.6296 41 1 7.8120 3.1612 -0.9714 42 1 7.8060 1.5048 -1.6240 43 1 4.4706 2.9568 -2.2465 44 1 6.1262 3.5227 -2.5734 45 1 4.1804 2.9003 -5.8532 46 1 4.3021 3.5081 -4.1845 47 1 5.6136 4.9207 -5.7446 48 1 6.6774 4.1033 -4.5745 49 1 6.5558 3.4956 -6.2431 50 1 5.7707 1.0954 -6.5261 51 1 6.3886 0.0361 -5.2359 52 1 5.2120 -2.3051 -7.8240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001368426790.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:30 Heat of formation + Delta-G solvation = -133.390219 kcal Electronic energy + Delta-G solvation = -32322.863462 eV Core-core repulsion = 28128.691058 eV Total energy + Delta-G solvation = -4194.172404 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53122 -40.55560 -39.98112 -37.22788 -36.81872 -35.45409 -34.87685 -33.75363 -32.28398 -31.67728 -30.70581 -28.91403 -27.84827 -26.22602 -25.12018 -24.63226 -23.85324 -23.46395 -21.41883 -20.84295 -19.90886 -18.64666 -18.29051 -18.08944 -17.67468 -17.35314 -17.05298 -16.71408 -16.55518 -16.38689 -16.09645 -15.85093 -15.57951 -15.14794 -14.83476 -14.73057 -14.68287 -14.55547 -14.34753 -14.10868 -13.75111 -13.57566 -13.29347 -13.20507 -13.08796 -13.05367 -12.86415 -12.69415 -12.64567 -12.51620 -12.39186 -12.20233 -12.12901 -12.05839 -11.90510 -11.67094 -11.52282 -10.90994 -10.82103 -10.64486 -10.43673 -9.99480 -9.46507 -9.34093 -8.21884 -6.36058 1.35824 1.37282 1.49230 1.66813 1.88880 2.10198 2.32581 2.40776 2.80614 2.88877 3.07819 3.61405 3.64523 3.69183 3.87883 3.96837 4.10141 4.11992 4.14572 4.22438 4.23292 4.26219 4.29574 4.39334 4.44496 4.58614 4.60785 4.66073 4.71839 4.75268 4.82296 4.84798 4.92432 4.96183 4.97456 4.99095 5.04862 5.05247 5.22403 5.28330 5.34718 5.47250 5.58750 5.73774 5.87643 5.91881 6.08074 6.13759 6.57045 6.72228 6.85021 7.26580 7.30470 7.56012 8.85039 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.004438 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.942072 B = 6307.691076 C = 8216.256017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C 0.508 3.492 4 O -0.585 6.585 5 N -0.714 5.714 6 C 0.126 3.874 7 C 0.044 3.956 8 H 0.083 0.917 9 C 0.071 3.929 10 O -0.392 6.392 11 C 0.070 3.930 12 C 0.026 3.974 13 N -0.526 5.526 14 C 0.048 3.952 15 C 0.501 3.499 16 O -0.571 6.571 17 N -0.606 5.606 18 C 0.101 3.899 19 C -0.159 4.159 20 C 0.266 3.734 21 C -0.536 4.536 22 H 0.050 0.950 23 C 0.010 3.990 24 N -0.928 5.928 25 Si 0.962 3.038 26 H -0.268 1.268 27 H -0.272 1.272 28 H -0.280 1.280 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.413 0.587 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.059 0.941 49 H 0.039 0.961 50 H 0.017 0.983 51 H -0.002 1.002 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 11.721 16.676 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 C 0.296 3.704 4 O -0.466 6.466 5 N -0.366 5.366 6 C 0.002 3.998 7 C -0.064 4.064 8 H 0.101 0.899 9 C -0.006 4.006 10 O -0.310 6.310 11 C -0.007 4.007 12 C -0.102 4.102 13 N -0.253 5.253 14 C -0.083 4.083 15 C 0.289 3.711 16 O -0.450 6.450 17 N -0.339 5.339 18 C -0.022 4.022 19 C -0.217 4.217 20 C 0.145 3.855 21 C -0.575 4.575 22 H 0.068 0.932 23 C -0.189 4.189 24 N -0.568 5.568 25 Si 0.787 3.213 26 H -0.192 1.192 27 H -0.197 1.197 28 H -0.206 1.206 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.249 0.751 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.078 0.922 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.016 0.984 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.597 11.330 16.927 20.378 hybrid contribution -0.054 -0.600 -1.250 1.387 sum -0.652 10.731 15.677 19.009 Atomic orbital electron populations 1.21493 0.93131 1.02393 1.02025 1.21687 0.98561 0.92764 1.05608 1.21161 0.82161 0.92376 0.74665 1.90650 1.56311 1.47728 1.51927 1.45977 1.06852 1.09531 1.74248 1.21408 0.91894 0.83736 1.02763 1.22672 0.93758 0.97122 0.92897 0.89925 1.22799 0.80845 1.01829 0.95154 1.87975 1.20403 1.70301 1.52334 1.22666 0.99318 0.93822 0.84925 1.22766 0.87001 1.00825 0.99568 1.61688 1.10025 1.52111 1.01427 1.22022 1.03527 0.94517 0.88217 1.21006 0.77672 0.89499 0.82924 1.90622 1.46772 1.28618 1.78979 1.48263 1.63065 1.14278 1.08256 1.21675 0.96810 0.82514 1.01212 1.22133 0.98269 0.99893 1.01387 1.18638 0.95467 0.84886 0.86510 1.21688 0.99963 1.13148 1.22672 0.93218 1.25788 0.99817 0.98265 0.94998 1.70049 1.31681 1.28952 1.26151 0.85444 0.79262 0.78338 0.78246 1.19209 1.19728 1.20555 0.94035 0.90289 0.92277 0.89155 0.86362 0.75056 0.89192 0.91914 0.92381 0.86031 0.92826 0.86704 0.92975 0.91126 0.87136 0.89725 0.91254 0.89054 0.88822 0.92218 0.94134 0.96469 0.98372 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.20 71.98 0.66 -2.22 16 2 C -0.15 -3.18 6.42 29.85 0.19 -2.98 16 3 C 0.51 13.28 7.83 87.66 0.69 13.97 16 4 O -0.59 -19.07 15.98 -3.01 -0.05 -19.12 16 5 N -0.71 -15.99 5.05 -463.05 -2.34 -18.33 16 6 C 0.13 2.40 4.73 86.38 0.41 2.81 16 7 C 0.04 0.77 2.26 44.91 0.10 0.87 16 8 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 9 C 0.07 1.16 6.21 72.01 0.45 1.61 16 10 O -0.39 -7.87 10.83 -148.98 -1.61 -9.48 16 11 C 0.07 1.42 7.01 72.02 0.50 1.92 16 12 C 0.03 0.62 5.31 86.32 0.46 1.07 16 13 N -0.53 -12.53 3.43 -874.30 -2.99 -15.52 16 14 C 0.05 1.25 3.89 85.56 0.33 1.58 16 15 C 0.50 19.56 7.42 87.66 0.65 20.21 16 16 O -0.57 -27.45 14.72 -3.05 -0.04 -27.50 16 17 N -0.61 -24.88 2.46 -826.14 -2.03 -26.91 16 18 C 0.10 3.04 5.93 86.38 0.51 3.55 16 19 C -0.16 -3.82 10.24 71.98 0.74 -3.09 16 20 C 0.27 14.16 5.16 85.63 0.44 14.61 16 21 C -0.54 -30.62 9.39 25.60 0.24 -30.38 16 22 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 23 C 0.01 0.58 5.46 84.66 0.46 1.05 16 24 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 25 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 29 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.41 9.38 7.43 -92.71 -0.69 8.69 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.30 6.34 -2.39 -0.02 1.29 16 37 H 0.06 1.00 7.29 -2.39 -0.02 0.98 16 38 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 42 H 0.07 2.12 6.74 -2.39 -0.02 2.11 16 43 H 0.11 2.72 4.82 -2.39 -0.01 2.70 16 44 H 0.09 1.83 7.03 -2.39 -0.02 1.81 16 45 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 46 H 0.09 2.20 6.44 -2.39 -0.02 2.19 16 47 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 49 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.02 0.94 8.07 -2.38 -0.02 0.93 16 51 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 52 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -76.40 411.81 0.30 -76.10 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.22 Total: 24.94 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 6.84 Total: 24.58 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -7.08 Total: -116.32 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -1.71 Total: -56.10 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -76.40 0.30 -76.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001368426790.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.292 kcal (2) G-P(sol) polarization free energy of solvation -76.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds