Wall clock time and date at job start Wed Apr 1 2020 00:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46623 * 2 1 4 4 O 1.21280 * 120.00326 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99461 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99708 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47243 * 179.97438 * 6 5 3 8 8 H 1.09004 * 109.54287 * 305.11205 * 7 6 5 9 9 C 1.53097 * 109.50719 * 184.99927 * 7 6 5 10 10 N 1.47020 * 109.25473 * 183.21665 * 9 7 6 11 11 C 1.46900 * 110.99531 * 182.39284 * 10 9 7 12 12 C 1.50703 * 109.47113 * 170.00280 * 11 10 9 13 13 O 1.21287 * 119.99553 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00320 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99637 * 359.97438 * 14 12 11 16 16 C 1.53007 * 109.47034 * 269.99986 * 15 14 12 17 17 C 1.46499 * 119.99751 * 180.02562 * 14 12 11 18 18 C 1.50701 * 109.47260 * 89.99944 * 17 14 12 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 14 20 20 C 1.37871 * 119.99694 * 180.27562 * 18 17 14 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 17 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 C 1.47015 * 110.75108 * 58.62132 * 10 9 7 27 27 C 1.53091 * 109.25519 * 301.37884 * 26 10 9 28 28 O 1.43017 * 109.26089 * 56.85419 * 27 26 10 29 29 H 1.08999 * 109.47729 * 60.00011 * 1 2 3 30 30 H 1.09006 * 109.47297 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47145 * 299.99523 * 1 2 3 32 32 H 1.09003 * 109.47145 * 240.00477 * 2 1 3 33 33 H 1.08991 * 109.47093 * 120.00023 * 2 1 3 34 34 H 0.96998 * 120.00469 * 0.02562 * 5 3 2 35 35 H 1.09003 * 109.46823 * 60.00249 * 6 5 3 36 36 H 1.09003 * 109.47420 * 300.00593 * 6 5 3 37 37 H 1.08997 * 109.50760 * 63.28664 * 9 7 6 38 38 H 1.08995 * 109.54567 * 303.17460 * 9 7 6 39 39 H 1.09003 * 109.47518 * 50.00360 * 11 10 9 40 40 H 1.09001 * 109.47738 * 289.99984 * 11 10 9 41 41 H 1.08999 * 109.47518 * 29.99982 * 15 14 12 42 42 H 1.08995 * 109.46848 * 150.00638 * 15 14 12 43 43 H 1.08997 * 109.47466 * 300.00465 * 16 15 14 44 44 H 1.09002 * 109.46479 * 60.00355 * 16 15 14 45 45 H 1.08998 * 109.47319 * 180.02562 * 16 15 14 46 46 H 1.09000 * 109.47197 * 329.98950 * 17 14 12 47 47 H 1.09007 * 109.46342 * 209.99522 * 17 14 12 48 48 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.50639 * 61.31513 * 26 10 9 50 50 H 1.09003 * 109.50484 * 181.44607 * 26 10 9 51 51 H 1.08995 * 109.51092 * 296.91442 * 27 26 10 52 52 H 1.09008 * 109.54274 * 176.80551 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 3.8456 3.0484 -0.0011 7 6 5.3756 3.0485 -0.0010 8 1 5.7402 2.4581 0.8396 9 6 5.8867 4.4862 0.1242 10 7 7.3548 4.4873 0.0462 11 6 7.8900 5.8444 0.2192 12 6 9.3870 5.7773 0.3793 13 8 9.9523 4.7046 0.3524 14 7 10.0976 6.9093 0.5534 15 6 9.4147 8.2049 0.5864 16 6 9.3357 8.7761 -0.8309 17 6 11.5529 6.8440 0.7084 18 6 12.2072 6.9406 -0.6457 19 1 11.5997 7.0401 -1.5331 20 6 13.5811 6.8955 -0.7522 21 7 14.1519 6.9743 -1.9344 22 14 14.6318 6.7228 0.7826 23 1 14.8553 5.2831 1.0701 24 1 15.9391 7.3931 0.5657 25 1 13.9362 7.3549 1.9324 26 6 7.8095 3.8994 -1.2222 27 6 7.2791 2.4676 -1.3338 28 8 5.8532 2.4829 -1.2247 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9877 0.9300 -0.0013 35 1 3.4825 3.5624 0.8889 36 1 3.4818 3.5621 -0.8910 37 1 5.5728 4.9021 1.0816 38 1 5.4787 5.0901 -0.6862 39 1 7.4497 6.2983 1.1071 40 1 7.6449 6.4461 -0.6560 41 1 8.4075 8.0749 0.9824 42 1 9.9701 8.8922 1.2245 43 1 10.3428 8.9061 -1.2269 44 1 8.7803 8.0887 -1.4690 45 1 8.8280 9.7403 -0.8063 46 1 11.8263 5.8989 1.1776 47 1 11.8890 7.6709 1.3341 48 1 15.1185 6.9430 -2.0094 49 1 7.4322 4.4933 -2.0546 50 1 8.8992 3.8869 -1.2476 51 1 7.6990 1.8603 -0.5321 52 1 7.5658 2.0467 -2.2976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001374114016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:19 Heat of formation + Delta-G solvation = -108.798281 kcal Electronic energy + Delta-G solvation = -30556.121431 eV Core-core repulsion = 26363.015413 eV Total energy + Delta-G solvation = -4193.106017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.33735 -39.74760 -38.86174 -35.94905 -35.22435 -35.00901 -33.17787 -32.69333 -31.67669 -30.31300 -29.57288 -27.95321 -26.92092 -24.81976 -24.16744 -22.92500 -22.66985 -21.84602 -20.90764 -20.19758 -18.47389 -17.50498 -17.10503 -16.84251 -16.63315 -16.23128 -16.16952 -15.82746 -15.44124 -15.39177 -14.80152 -14.56470 -14.09758 -14.04613 -14.00282 -13.83057 -13.57231 -13.28486 -12.88589 -12.73404 -12.71042 -12.58679 -12.46021 -12.18704 -12.09690 -11.97459 -11.69801 -11.52119 -11.42032 -11.40841 -11.28816 -10.94804 -10.71697 -10.61339 -10.47060 -10.15965 -10.15196 -9.85323 -9.51534 -9.37471 -9.00477 -8.61023 -8.34855 -7.75222 -6.11247 -4.09693 2.37594 2.82680 3.26666 3.28287 3.32685 3.34839 3.44980 3.49401 4.02988 4.37229 4.40206 4.55278 4.65182 4.72707 4.75665 4.84231 4.87981 5.02539 5.14280 5.17429 5.22182 5.23715 5.27265 5.32777 5.37569 5.42239 5.44692 5.45992 5.51792 5.57742 5.67972 5.69872 5.74805 5.86185 5.93017 6.03280 6.07758 6.12702 6.24635 6.62563 6.77418 6.80262 6.86235 6.94872 7.03505 7.19941 7.32853 7.58810 7.94401 8.21924 8.44480 8.90418 8.96770 9.49395 11.01835 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.002018 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.011188 B =13869.074804 C =14352.967687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.510 3.490 4 O -0.545 6.545 5 N -0.725 5.725 6 C 0.129 3.871 7 C 0.084 3.916 8 H 0.075 0.925 9 C 0.027 3.973 10 N -0.517 5.517 11 C 0.037 3.963 12 C 0.510 3.490 13 O -0.525 6.525 14 N -0.595 5.595 15 C 0.112 3.888 16 C -0.171 4.171 17 C 0.217 3.783 18 C -0.526 4.526 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.875 3.125 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.011 3.989 27 C 0.069 3.931 28 O -0.383 6.383 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.405 0.595 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.029 0.971 48 H 0.264 0.736 49 H 0.037 0.963 50 H 0.114 0.886 51 H 0.063 0.937 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.402 -8.517 5.212 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.297 3.703 4 O -0.422 6.422 5 N -0.377 5.377 6 C 0.005 3.995 7 C 0.026 3.974 8 H 0.093 0.907 9 C -0.102 4.102 10 N -0.242 5.242 11 C -0.094 4.094 12 C 0.296 3.704 13 O -0.401 6.401 14 N -0.327 5.327 15 C -0.012 4.012 16 C -0.229 4.229 17 C 0.096 3.904 18 C -0.564 4.564 19 H 0.094 0.906 20 C -0.131 4.131 21 N -0.536 5.536 22 Si 0.703 3.297 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.116 4.116 27 C -0.008 4.008 28 O -0.302 6.302 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.239 0.761 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.132 0.868 51 H 0.081 0.919 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.401 -8.765 5.355 24.644 hybrid contribution 1.050 0.431 0.104 1.140 sum -21.351 -8.334 5.460 23.561 Atomic orbital electron populations 1.21528 0.93008 1.01579 1.03366 1.21631 0.98681 0.93696 1.04443 1.20813 0.81934 0.91975 0.75601 1.90706 1.55328 1.46640 1.49506 1.45926 1.07286 1.08898 1.75606 1.21324 0.91233 0.83754 1.03208 1.22305 0.92709 0.93978 0.88443 0.90699 1.22672 0.88579 0.96654 1.02337 1.61839 1.07083 1.19898 1.35369 1.22075 0.94731 0.90079 1.02465 1.20083 0.88232 0.84405 0.77646 1.90631 1.71666 1.28293 1.49484 1.47967 1.09042 1.04943 1.70773 1.21414 0.96431 0.85717 0.97655 1.22236 1.04017 0.99551 0.97102 1.19665 0.75294 0.97399 0.98022 1.21331 0.91927 1.50643 0.92500 0.90617 1.24863 0.97795 0.94528 0.95867 1.69895 1.10485 1.50469 1.22767 0.86863 0.80115 0.78940 0.83828 1.19964 1.21144 1.19132 1.23002 1.04114 0.95459 0.89065 1.22680 0.79551 0.95933 1.02602 1.87971 1.22148 1.82058 1.38057 0.91986 0.92078 0.92001 0.88820 0.88898 0.76054 0.89869 0.90598 0.89422 0.93582 0.88377 0.91996 0.91957 0.90634 0.90131 0.93407 0.92743 0.94594 0.95345 0.92597 0.94442 0.86797 0.91893 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.20 37.16 0.34 -0.55 16 2 C -0.14 -0.85 6.42 -27.88 -0.18 -1.03 16 3 C 0.51 4.82 7.83 -10.98 -0.09 4.74 16 4 O -0.54 -7.34 15.98 5.56 0.09 -7.25 16 5 N -0.73 -5.94 5.51 -60.29 -0.33 -6.27 16 6 C 0.13 1.16 5.34 -4.04 -0.02 1.14 16 7 C 0.08 0.82 2.84 -26.68 -0.08 0.74 16 8 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 9 C 0.03 0.28 4.93 -3.71 -0.02 0.26 16 10 N -0.52 -7.11 4.46 -235.75 -1.05 -8.17 16 11 C 0.04 0.53 4.00 -4.97 -0.02 0.51 16 12 C 0.51 9.85 7.38 -10.98 -0.08 9.77 16 13 O -0.52 -12.20 13.93 5.55 0.08 -12.12 16 14 N -0.59 -11.62 2.46 -175.05 -0.43 -12.05 16 15 C 0.11 1.65 5.98 -4.04 -0.02 1.63 16 16 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 17 C 0.22 5.12 4.27 -5.19 -0.02 5.10 16 18 C -0.53 -14.54 9.47 -34.44 -0.33 -14.87 16 19 H 0.08 2.29 7.66 -52.49 -0.40 1.88 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 22 Si 0.88 21.25 27.46 -169.99 -4.67 16.58 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.09 6.55 56.52 0.37 -5.72 16 26 C 0.01 0.16 5.29 -3.71 -0.02 0.14 16 27 C 0.07 0.82 7.01 37.20 0.26 1.09 16 28 O -0.38 -4.36 10.42 -35.23 -0.37 -4.72 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.05 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 2.55 8.47 -40.82 -0.35 2.20 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 1.13 7.30 -51.93 -0.38 0.75 16 40 H 0.06 0.82 7.16 -51.93 -0.37 0.45 16 41 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 42 H 0.08 1.06 7.89 -51.93 -0.41 0.65 16 43 H 0.08 1.50 7.25 -51.93 -0.38 1.12 16 44 H 0.05 0.71 7.22 -51.93 -0.38 0.34 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.04 0.92 6.84 -51.93 -0.36 0.56 16 47 H 0.03 0.65 6.96 -51.93 -0.36 0.28 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.11 2.05 5.88 -51.93 -0.31 1.74 16 51 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 LS Contribution 411.85 15.07 6.21 6.21 Total: -1.00 -35.35 411.85 -8.79 -44.13 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -9.10 Total: 1.59 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 0.01 Total: 8.44 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -1.04 Total: -52.85 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.20 Total: -24.10 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.35 -8.79 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001374114016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.665 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds