Wall clock time and date at job start Wed Apr 1 2020 00:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46623 * 2 1 4 4 O 1.21280 * 120.00326 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99461 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99708 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47243 * 179.97438 * 6 5 3 8 8 H 1.09004 * 109.54287 * 305.11205 * 7 6 5 9 9 C 1.53097 * 109.50719 * 184.99927 * 7 6 5 10 10 N 1.47020 * 109.25473 * 183.21665 * 9 7 6 11 11 C 1.46900 * 110.99531 * 182.39284 * 10 9 7 12 12 C 1.50703 * 109.47113 * 170.00280 * 11 10 9 13 13 O 1.21287 * 119.99553 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00320 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99637 * 359.97438 * 14 12 11 16 16 C 1.53007 * 109.47034 * 269.99986 * 15 14 12 17 17 C 1.46499 * 119.99751 * 180.02562 * 14 12 11 18 18 C 1.50701 * 109.47260 * 89.99944 * 17 14 12 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 14 20 20 C 1.37871 * 119.99694 * 180.27562 * 18 17 14 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 17 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 C 1.47015 * 110.75108 * 58.62132 * 10 9 7 27 27 C 1.53091 * 109.25519 * 301.37884 * 26 10 9 28 28 O 1.43017 * 109.26089 * 56.85419 * 27 26 10 29 29 H 1.08999 * 109.47729 * 60.00011 * 1 2 3 30 30 H 1.09006 * 109.47297 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47145 * 299.99523 * 1 2 3 32 32 H 1.09003 * 109.47145 * 240.00477 * 2 1 3 33 33 H 1.08991 * 109.47093 * 120.00023 * 2 1 3 34 34 H 0.96998 * 120.00469 * 0.02562 * 5 3 2 35 35 H 1.09003 * 109.46823 * 60.00249 * 6 5 3 36 36 H 1.09003 * 109.47420 * 300.00593 * 6 5 3 37 37 H 1.08997 * 109.50760 * 63.28664 * 9 7 6 38 38 H 1.08995 * 109.54567 * 303.17460 * 9 7 6 39 39 H 1.09003 * 109.47518 * 50.00360 * 11 10 9 40 40 H 1.09001 * 109.47738 * 289.99984 * 11 10 9 41 41 H 1.08999 * 109.47518 * 29.99982 * 15 14 12 42 42 H 1.08995 * 109.46848 * 150.00638 * 15 14 12 43 43 H 1.08997 * 109.47466 * 300.00465 * 16 15 14 44 44 H 1.09002 * 109.46479 * 60.00355 * 16 15 14 45 45 H 1.08998 * 109.47319 * 180.02562 * 16 15 14 46 46 H 1.09000 * 109.47197 * 329.98950 * 17 14 12 47 47 H 1.09007 * 109.46342 * 209.99522 * 17 14 12 48 48 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.50639 * 61.31513 * 26 10 9 50 50 H 1.09003 * 109.50484 * 181.44607 * 26 10 9 51 51 H 1.08995 * 109.51092 * 296.91442 * 27 26 10 52 52 H 1.09008 * 109.54274 * 176.80551 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 3.8456 3.0484 -0.0011 7 6 5.3756 3.0485 -0.0010 8 1 5.7402 2.4581 0.8396 9 6 5.8867 4.4862 0.1242 10 7 7.3548 4.4873 0.0462 11 6 7.8900 5.8444 0.2192 12 6 9.3870 5.7773 0.3793 13 8 9.9523 4.7046 0.3524 14 7 10.0976 6.9093 0.5534 15 6 9.4147 8.2049 0.5864 16 6 9.3357 8.7761 -0.8309 17 6 11.5529 6.8440 0.7084 18 6 12.2072 6.9406 -0.6457 19 1 11.5997 7.0401 -1.5331 20 6 13.5811 6.8955 -0.7522 21 7 14.1519 6.9743 -1.9344 22 14 14.6318 6.7228 0.7826 23 1 14.8553 5.2831 1.0701 24 1 15.9391 7.3931 0.5657 25 1 13.9362 7.3549 1.9324 26 6 7.8095 3.8994 -1.2222 27 6 7.2791 2.4676 -1.3338 28 8 5.8532 2.4829 -1.2247 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9877 0.9300 -0.0013 35 1 3.4825 3.5624 0.8889 36 1 3.4818 3.5621 -0.8910 37 1 5.5728 4.9021 1.0816 38 1 5.4787 5.0901 -0.6862 39 1 7.4497 6.2983 1.1071 40 1 7.6449 6.4461 -0.6560 41 1 8.4075 8.0749 0.9824 42 1 9.9701 8.8922 1.2245 43 1 10.3428 8.9061 -1.2269 44 1 8.7803 8.0887 -1.4690 45 1 8.8280 9.7403 -0.8063 46 1 11.8263 5.8989 1.1776 47 1 11.8890 7.6709 1.3341 48 1 15.1185 6.9430 -2.0094 49 1 7.4322 4.4933 -2.0546 50 1 8.8992 3.8869 -1.2476 51 1 7.6990 1.8603 -0.5321 52 1 7.5658 2.0467 -2.2976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001374114016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:19 Heat of formation + Delta-G solvation = -136.866929 kcal Electronic energy + Delta-G solvation = -30557.338578 eV Core-core repulsion = 26363.015413 eV Total energy + Delta-G solvation = -4194.323165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34157 -40.72949 -40.03721 -37.20749 -36.50856 -35.86584 -34.78236 -33.75938 -32.49435 -31.88962 -30.79639 -29.40744 -28.00677 -25.87274 -24.94290 -24.18668 -24.10420 -23.06046 -21.76497 -20.98987 -19.92321 -19.07361 -18.23439 -18.14002 -17.60390 -17.31125 -17.08281 -16.86681 -16.62109 -16.47817 -16.13780 -15.62719 -15.46219 -15.32764 -14.83927 -14.68815 -14.64380 -14.58407 -14.42852 -14.06679 -13.96236 -13.58639 -13.54217 -13.28878 -13.04957 -13.01949 -12.99065 -12.62955 -12.60631 -12.41442 -12.35383 -12.27276 -11.99964 -11.99625 -11.90446 -11.63492 -11.57664 -10.95514 -10.84565 -10.79715 -10.42063 -10.10325 -9.47031 -9.35178 -8.31680 -6.35209 1.32594 1.36326 1.44293 1.67763 1.81094 2.06417 2.30516 2.31823 2.61796 2.85725 3.02673 3.61318 3.77639 3.78842 3.91860 3.98548 4.06404 4.09602 4.14473 4.26425 4.28120 4.29996 4.33912 4.46111 4.47699 4.52149 4.59147 4.60278 4.63484 4.76788 4.79274 4.85105 4.91249 4.93643 4.95580 4.98978 5.02363 5.02678 5.09316 5.33033 5.45294 5.46462 5.49827 5.67712 5.74793 5.90180 6.10486 6.27559 6.56495 6.66283 6.75016 7.24973 7.27535 7.47838 8.84871 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.002018 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.011188 B =13869.074804 C =14352.967687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.504 3.496 4 O -0.591 6.591 5 N -0.718 5.718 6 C 0.135 3.865 7 C 0.088 3.912 8 H 0.082 0.918 9 C 0.027 3.973 10 N -0.530 5.530 11 C 0.049 3.951 12 C 0.500 3.500 13 O -0.574 6.574 14 N -0.602 5.602 15 C 0.105 3.895 16 C -0.164 4.164 17 C 0.225 3.775 18 C -0.525 4.525 19 H 0.032 0.968 20 C 0.009 3.991 21 N -0.947 5.947 22 Si 0.945 3.055 23 H -0.278 1.278 24 H -0.278 1.278 25 H -0.238 1.238 26 C 0.014 3.986 27 C 0.077 3.923 28 O -0.387 6.387 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.416 0.584 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.049 0.951 39 H 0.137 0.863 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.032 0.968 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.017 0.983 47 H 0.047 0.953 48 H 0.266 0.734 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.060 0.940 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.321 -8.618 7.640 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.293 3.707 4 O -0.472 6.472 5 N -0.370 5.370 6 C 0.010 3.990 7 C 0.030 3.970 8 H 0.100 0.900 9 C -0.101 4.101 10 N -0.255 5.255 11 C -0.081 4.081 12 C 0.288 3.712 13 O -0.454 6.454 14 N -0.334 5.334 15 C -0.017 4.017 16 C -0.222 4.222 17 C 0.102 3.898 18 C -0.563 4.563 19 H 0.050 0.950 20 C -0.189 4.189 21 N -0.587 5.587 22 Si 0.768 3.232 23 H -0.204 1.204 24 H -0.204 1.204 25 H -0.161 1.161 26 C -0.114 4.114 27 C 0.001 3.999 28 O -0.306 6.306 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.252 0.748 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.068 0.932 39 H 0.155 0.845 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.035 0.965 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.052 0.948 50 H 0.090 0.910 51 H 0.079 0.921 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.349 -8.850 7.794 27.055 hybrid contribution 1.579 0.466 -0.741 1.805 sum -22.771 -8.384 7.053 25.269 Atomic orbital electron populations 1.21537 0.93659 1.02545 1.01820 1.21691 0.98037 0.91523 1.06566 1.21483 0.81761 0.93011 0.74454 1.90686 1.56436 1.48292 1.51779 1.45909 1.07324 1.08998 1.74780 1.21221 0.90509 0.84282 1.02957 1.22356 0.92966 0.93718 0.87965 0.90040 1.22792 0.86129 0.97275 1.03903 1.61807 1.09227 1.19733 1.34722 1.22041 0.90642 0.90876 1.04589 1.21090 0.90517 0.83459 0.76140 1.90607 1.73164 1.30171 1.51428 1.48077 1.07590 1.07168 1.70593 1.21781 0.98595 0.83593 0.97709 1.22156 1.01420 1.01544 0.97123 1.19317 0.78169 0.96889 0.95397 1.21554 0.91934 1.49633 0.93206 0.94950 1.25824 0.99410 0.94280 0.99341 1.70053 1.10936 1.52317 1.25423 0.85761 0.78397 0.78747 0.80307 1.20396 1.20370 1.16143 1.22842 1.01620 0.97248 0.89672 1.22572 0.79941 0.94257 1.03161 1.87972 1.21400 1.82172 1.39057 0.93735 0.89782 0.93404 0.86830 0.86365 0.74778 0.88984 0.92031 0.86804 0.93246 0.84549 0.90874 0.87217 0.89495 0.94906 0.93901 0.88964 0.96468 0.93480 0.92486 0.94756 0.90985 0.92145 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.20 71.98 0.66 -0.95 16 2 C -0.14 -1.31 6.42 29.85 0.19 -1.12 16 3 C 0.50 8.80 7.83 87.66 0.69 9.49 16 4 O -0.59 -15.70 15.98 -3.03 -0.05 -15.75 16 5 N -0.72 -10.34 5.51 -463.05 -2.55 -12.89 16 6 C 0.13 2.17 5.34 86.38 0.46 2.63 16 7 C 0.09 1.51 2.84 30.63 0.09 1.60 16 8 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 9 C 0.03 0.49 4.93 86.31 0.43 0.92 16 10 N -0.53 -13.74 4.46 -899.77 -4.01 -17.75 16 11 C 0.05 1.27 4.00 85.56 0.34 1.61 16 12 C 0.50 19.12 7.38 87.66 0.65 19.77 16 13 O -0.57 -27.51 13.93 -3.05 -0.04 -27.55 16 14 N -0.60 -23.13 2.46 -826.13 -2.03 -25.16 16 15 C 0.11 2.83 5.98 86.38 0.52 3.35 16 16 C -0.16 -4.72 10.24 71.98 0.74 -3.98 16 17 C 0.22 10.65 4.27 85.63 0.37 11.01 16 18 C -0.52 -30.15 9.47 25.60 0.24 -29.91 16 19 H 0.03 2.08 7.66 -2.91 -0.02 2.06 16 20 C 0.01 0.53 5.47 84.65 0.46 0.99 16 21 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 22 Si 0.94 44.22 27.46 68.60 1.88 46.10 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.24 -9.97 6.55 99.48 0.65 -9.32 16 26 C 0.01 0.42 5.29 86.31 0.46 0.88 16 27 C 0.08 1.82 7.01 72.01 0.50 2.32 16 28 O -0.39 -8.20 10.42 -148.98 -1.55 -9.75 16 29 H 0.04 0.66 8.10 -2.39 -0.02 0.65 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 0.55 8.14 -2.39 -0.02 0.54 16 34 H 0.42 4.20 8.47 -92.71 -0.79 3.42 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.14 2.48 7.30 -2.39 -0.02 2.47 16 40 H 0.07 1.77 7.16 -2.39 -0.02 1.75 16 41 H 0.11 1.96 6.44 -2.39 -0.02 1.94 16 42 H 0.09 2.17 7.89 -2.39 -0.02 2.15 16 43 H 0.03 1.24 7.25 -2.39 -0.02 1.23 16 44 H 0.04 1.24 7.22 -2.39 -0.02 1.23 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.02 0.88 6.84 -2.39 -0.02 0.87 16 47 H 0.05 2.06 6.96 -2.38 -0.02 2.04 16 48 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 49 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.07 2.74 5.88 -2.39 -0.01 2.73 16 51 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -83.27 411.85 -1.20 -84.47 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.06 Total: 18.90 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.79 Total: 18.61 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -8.29 Total: -115.04 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -1.64 Total: -53.04 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Total: -83.27 -1.20 -84.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001374114016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.402 kcal (2) G-P(sol) polarization free energy of solvation -83.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds