Wall clock time and date at job start Wed Apr 1 2020 00:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 O 1.21282 * 120.00041 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00037 * 180.02562 * 3 2 1 6 6 C 1.47149 * 120.98070 * 359.71590 * 5 3 2 7 7 C 1.53709 * 108.16368 * 129.43482 * 6 5 3 8 8 O 1.42969 * 109.14712 * 52.53689 * 7 6 5 9 9 C 1.42965 * 114.16588 * 297.28934 * 8 7 6 10 10 H 1.08997 * 109.55391 * 302.63549 * 9 8 7 11 11 C 1.53000 * 109.51101 * 182.50338 * 9 8 7 12 12 N 1.46891 * 109.46958 * 65.25549 * 11 9 8 13 13 C 1.46901 * 111.00043 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47367 * 179.97438 * 13 12 11 15 15 O 1.21275 * 119.99969 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99932 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00014 * 0.02562 * 16 14 13 18 18 C 1.53000 * 109.47055 * 90.00225 * 17 16 14 19 19 C 1.46501 * 119.99686 * 180.02562 * 16 14 13 20 20 C 1.50703 * 109.47313 * 90.00025 * 19 16 14 21 21 H 1.08000 * 119.99782 * 0.02562 * 20 19 16 22 22 C 1.37873 * 119.99918 * 179.97438 * 20 19 16 23 23 N 1.31511 * 120.00413 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99785 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47331 * 59.99798 * 24 22 20 26 26 H 1.48502 * 109.47221 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46968 * 299.99728 * 24 22 20 28 28 C 1.47152 * 120.98198 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 32 32 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 33 33 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 34 34 H 1.09003 * 109.68244 * 249.21634 * 6 5 3 35 35 H 1.09001 * 109.68002 * 9.76637 * 6 5 3 36 36 H 1.08998 * 109.65500 * 292.57468 * 7 6 5 37 37 H 1.08997 * 109.44603 * 172.37241 * 7 6 5 38 38 H 1.09004 * 109.46592 * 185.25569 * 11 9 8 39 39 H 1.08995 * 109.46855 * 305.25343 * 11 9 8 40 40 H 1.00900 * 111.00346 * 56.04796 * 12 11 9 41 41 H 1.08997 * 109.47091 * 300.00395 * 13 12 11 42 42 H 1.09000 * 109.47144 * 59.99444 * 13 12 11 43 43 H 1.09005 * 109.46994 * 209.99899 * 17 16 14 44 44 H 1.09000 * 109.47220 * 329.99919 * 17 16 14 45 45 H 1.09003 * 109.46918 * 179.97438 * 18 17 16 46 46 H 1.08996 * 109.47033 * 299.99436 * 18 17 16 47 47 H 1.09000 * 109.47357 * 59.99777 * 18 17 16 48 48 H 1.09004 * 109.47270 * 210.00045 * 19 16 14 49 49 H 1.09002 * 109.47360 * 329.99962 * 19 16 14 50 50 H 0.97002 * 120.00159 * 180.02562 * 23 22 20 51 51 H 1.09004 * 109.68359 * 350.22986 * 28 5 3 52 52 H 1.08998 * 109.68381 * 110.74568 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3327 0.5653 0.0052 7 6 5.3455 0.8161 -1.1236 8 8 5.8787 2.1359 -0.9905 9 6 4.9068 3.1759 -1.1236 10 1 4.4091 3.0887 -2.0894 11 6 5.5985 4.5372 -1.0261 12 7 6.5032 4.7098 -2.1704 13 6 7.1859 6.0091 -2.1104 14 6 8.1037 6.1496 -3.2974 15 8 8.1810 5.2557 -4.1133 16 7 8.8377 7.2692 -3.4529 17 6 8.7439 8.3493 -2.4676 18 6 9.7834 8.1275 -1.3672 19 6 9.7295 7.4060 -4.6071 20 6 8.9792 8.0417 -5.7491 21 1 7.9420 8.3168 -5.6270 22 6 9.6173 8.2732 -6.9492 23 7 10.8804 7.9387 -7.0976 24 14 8.6874 9.0619 -8.3644 25 1 8.2022 10.4033 -7.9515 26 1 9.5913 9.2004 -9.5345 27 1 7.5294 8.2083 -8.7326 28 6 3.8716 3.0460 0.0000 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 4.8483 0.5363 0.9651 35 1 3.8187 -0.3808 -0.1647 36 1 4.8495 0.7195 -2.0893 37 1 6.1538 0.0882 -1.0541 38 1 4.8478 5.3274 -1.0339 39 1 6.1705 4.5885 -0.0997 40 1 6.0076 4.6021 -3.0427 41 1 6.4461 6.8094 -2.1260 42 1 7.7689 6.0712 -1.1915 43 1 8.9313 9.3050 -2.9572 44 1 7.7460 8.3553 -2.0290 45 1 9.7139 8.9314 -0.6343 46 1 9.5960 7.1719 -0.8775 47 1 10.7813 8.1215 -1.8058 48 1 10.5796 8.0327 -4.3373 49 1 10.0856 6.4213 -4.9099 50 1 11.3294 8.1019 -7.9418 51 1 3.0520 3.7435 -0.1733 52 1 4.3409 3.2624 0.9597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001407837495.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:26 Heat of formation + Delta-G solvation = -108.975557 kcal Electronic energy + Delta-G solvation = -30156.522091 eV Core-core repulsion = 25963.408386 eV Total energy + Delta-G solvation = -4193.113704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74869 -39.14177 -38.71591 -35.95907 -35.16755 -34.90811 -33.38760 -32.79048 -31.94471 -30.05682 -28.95867 -28.00277 -26.66526 -24.98697 -24.05636 -23.14919 -22.94962 -22.04111 -21.48355 -19.41835 -18.38880 -17.76692 -17.13832 -16.58775 -16.36895 -16.31888 -16.13646 -15.73893 -15.39453 -15.33785 -14.98212 -14.46456 -14.38889 -14.20860 -13.81426 -13.65682 -13.34805 -13.23707 -13.19061 -12.97777 -12.60828 -12.43145 -12.29842 -12.19090 -11.99502 -11.92901 -11.76806 -11.61471 -11.53747 -11.40561 -11.14239 -10.94533 -10.89325 -10.70358 -10.49584 -10.39028 -10.13331 -10.10533 -9.61963 -8.94641 -8.86044 -8.40799 -8.27375 -7.60530 -6.01551 -4.06293 2.21046 2.43347 3.32767 3.37335 3.39346 3.42998 3.51019 3.72088 4.02503 4.22274 4.42933 4.47214 4.48841 4.60318 4.61919 4.65136 4.78948 4.86562 4.89104 5.03705 5.10435 5.20950 5.24391 5.31479 5.32509 5.32936 5.36524 5.41401 5.46491 5.49801 5.51880 5.56424 5.69210 5.70934 5.79438 5.85237 5.94697 6.05920 6.26402 6.51694 6.83486 6.89938 6.96034 7.16624 7.42266 7.50330 7.60423 7.73709 7.95251 8.27028 8.48941 8.93577 9.17346 9.58648 11.06344 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.001985 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.009612 B =14104.483008 C =14743.262516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.539 6.539 5 N -0.618 5.618 6 C 0.071 3.929 7 C 0.045 3.955 8 O -0.352 6.352 9 C 0.083 3.917 10 H 0.064 0.936 11 C 0.069 3.931 12 N -0.664 5.664 13 C 0.042 3.958 14 C 0.505 3.495 15 O -0.528 6.528 16 N -0.599 5.599 17 C 0.107 3.893 18 C -0.169 4.169 19 C 0.247 3.753 20 C -0.526 4.526 21 H 0.055 0.945 22 C 0.060 3.940 23 N -0.894 5.894 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 C 0.083 3.917 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.350 0.650 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.061 0.939 48 H 0.031 0.969 49 H 0.043 0.957 50 H 0.263 0.737 51 H 0.101 0.899 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 -13.894 19.625 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.303 3.697 4 O -0.416 6.416 5 N -0.353 5.353 6 C -0.052 4.052 7 C -0.033 4.033 8 O -0.270 6.270 9 C 0.024 3.976 10 H 0.082 0.918 11 C -0.061 4.061 12 N -0.296 5.296 13 C -0.091 4.091 14 C 0.290 3.710 15 O -0.404 6.404 16 N -0.332 5.332 17 C -0.017 4.017 18 C -0.228 4.228 19 C 0.128 3.872 20 C -0.565 4.565 21 H 0.074 0.926 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.040 4.040 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.170 0.830 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.049 0.951 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.119 0.881 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.436 -14.171 19.357 27.998 hybrid contribution -1.273 1.016 -1.037 1.931 sum -15.709 -13.155 18.320 27.486 Atomic orbital electron populations 1.21546 0.92811 1.01723 1.03461 1.21668 0.98785 0.93618 1.04250 1.20864 0.81310 0.92120 0.75422 1.90707 1.54603 1.46660 1.49594 1.48193 1.05734 1.07271 1.74080 1.22633 0.91420 0.90203 1.00990 1.23043 0.97319 0.86146 0.96744 1.88158 1.32930 1.13027 1.92883 1.22462 0.89010 0.88834 0.97270 0.91833 1.21895 0.94896 0.93063 0.96232 1.60007 1.33075 1.31387 1.05143 1.21906 0.97402 0.90562 0.99179 1.20151 0.81628 0.82625 0.86581 1.90675 1.65659 1.39771 1.44255 1.48246 1.43781 1.15579 1.25641 1.21398 0.98104 0.92327 0.89920 1.22226 1.00803 1.01165 0.98581 1.19242 0.88235 0.98317 0.81383 1.21396 0.97663 1.40145 0.97250 0.92645 1.24936 0.94950 0.95803 0.98460 1.69922 1.10057 1.47533 1.25821 0.86571 0.79697 0.79602 0.81590 1.20307 1.21189 1.20242 1.22292 0.98160 0.83774 0.99801 0.91927 0.91954 0.91897 0.88855 0.88805 0.90182 0.88752 0.92580 0.87399 0.93528 0.89786 0.82993 0.93031 0.88709 0.90029 0.91951 0.92271 0.92987 0.92024 0.95085 0.93886 0.92697 0.88088 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.16 0.34 -0.52 16 2 C -0.14 -0.81 4.79 -27.88 -0.13 -0.95 16 3 C 0.51 4.89 7.71 -10.99 -0.08 4.80 16 4 O -0.54 -7.22 15.45 5.56 0.09 -7.14 16 5 N -0.62 -5.24 3.01 -172.00 -0.52 -5.76 16 6 C 0.07 0.41 6.57 -3.32 -0.02 0.39 16 7 C 0.05 0.35 7.00 37.53 0.26 0.61 16 8 O -0.35 -4.02 10.33 -35.23 -0.36 -4.39 16 9 C 0.08 0.86 2.96 -26.56 -0.08 0.78 16 10 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 11 C 0.07 0.74 5.35 -3.83 -0.02 0.72 16 12 N -0.66 -9.72 6.08 -115.07 -0.70 -10.42 16 13 C 0.04 0.63 4.72 -4.98 -0.02 0.60 16 14 C 0.50 10.59 7.71 -10.99 -0.08 10.50 16 15 O -0.53 -13.55 15.78 5.56 0.09 -13.46 16 16 N -0.60 -12.70 2.46 -175.06 -0.43 -13.13 16 17 C 0.11 1.70 5.93 -4.04 -0.02 1.68 16 18 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 19 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 20 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 21 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 24 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.08 0.76 5.93 -3.51 -0.02 0.74 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.09 0.35 8.01 -51.93 -0.42 -0.07 16 33 H 0.09 0.38 7.67 -51.93 -0.40 -0.02 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.30 6.05 -51.93 -0.31 -0.01 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 41 H 0.05 0.68 7.40 -51.93 -0.38 0.30 16 42 H 0.09 1.26 7.19 -51.93 -0.37 0.88 16 43 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 44 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 49 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.10 1.02 7.08 -51.93 -0.37 0.65 16 52 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 418.17 15.07 6.30 6.30 Total: -1.00 -36.96 418.17 -8.91 -45.86 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -9.13 Total: 0.89 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 0.05 Total: 10.29 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.91 Total: -55.37 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.19 Total: -24.99 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -36.96 -8.91 -45.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001407837495.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.112 kcal (2) G-P(sol) polarization free energy of solvation -36.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds