Wall clock time and date at job start Wed Apr 1 2020 00:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47326 * 2 1 4 4 O 1.21282 * 119.99664 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99974 * 179.97438 * 3 2 1 6 6 C 1.46504 * 119.99618 * 174.93661 * 5 3 2 7 7 C 1.52998 * 112.94095 * 295.51555 * 6 5 3 8 8 C 1.53006 * 109.46970 * 303.82690 * 7 6 5 9 9 O 1.42901 * 109.46780 * 179.97438 * 8 7 6 10 10 C 1.53939 * 113.73079 * 163.94832 * 6 5 3 11 11 N 1.48298 * 86.06285 * 269.30547 * 10 6 5 12 12 C 1.46896 * 111.00740 * 222.41863 * 11 10 6 13 13 C 1.50698 * 109.46952 * 269.35243 * 12 11 10 14 14 O 1.21280 * 120.00362 * 0.02562 * 13 12 11 15 15 N 1.34787 * 119.99977 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99898 * 0.02562 * 15 13 12 17 17 C 1.53000 * 109.47266 * 89.99750 * 16 15 13 18 18 C 1.46497 * 119.99878 * 179.97438 * 15 13 12 19 19 C 1.50705 * 109.46910 * 90.00158 * 18 15 13 20 20 H 1.08003 * 120.00115 * 359.97438 * 19 18 15 21 21 C 1.37876 * 119.99783 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99733 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99967 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47428 * 89.99658 * 23 21 19 25 25 H 1.48508 * 109.46989 * 209.99373 * 23 21 19 26 26 H 1.48505 * 109.47379 * 329.99138 * 23 21 19 27 27 C 1.47958 * 90.75682 * 335.31126 * 11 10 6 28 28 H 1.09005 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46758 * 299.99365 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99379 * 1 2 3 31 31 H 1.08998 * 109.46982 * 240.00166 * 2 1 3 32 32 H 1.09004 * 109.47263 * 120.00693 * 2 1 3 33 33 H 0.97000 * 120.00061 * 354.94082 * 5 3 2 34 34 H 1.09003 * 109.47215 * 63.82219 * 7 6 5 35 35 H 1.08997 * 109.47232 * 183.82656 * 7 6 5 36 36 H 1.09001 * 109.47141 * 299.92720 * 8 7 6 37 37 H 1.08996 * 109.47197 * 59.92659 * 8 7 6 38 38 H 0.96706 * 113.99395 * 179.97438 * 9 8 7 39 39 H 1.09004 * 113.75843 * 23.67979 * 10 6 5 40 40 H 1.09003 * 113.75679 * 155.04072 * 10 6 5 41 41 H 1.08990 * 109.47229 * 29.35410 * 12 11 10 42 42 H 1.08999 * 109.47054 * 149.35510 * 12 11 10 43 43 H 1.08993 * 109.47584 * 210.00260 * 16 15 13 44 44 H 1.09004 * 109.46882 * 330.00154 * 16 15 13 45 45 H 1.09002 * 109.46507 * 59.99966 * 17 16 15 46 46 H 1.08992 * 109.47392 * 180.02562 * 17 16 15 47 47 H 1.09002 * 109.47234 * 300.00155 * 17 16 15 48 48 H 1.08999 * 109.46749 * 209.99417 * 18 15 13 49 49 H 1.08997 * 109.47342 * 329.99846 * 18 15 13 50 50 H 0.97003 * 119.99346 * 180.02562 * 22 21 19 51 51 H 1.09000 * 113.75567 * 270.36727 * 27 11 10 52 52 H 1.08998 * 113.76163 * 139.00338 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8467 3.0434 -0.1115 7 6 3.4949 3.6943 -1.4507 8 6 4.0360 2.8333 -2.5939 9 8 3.7069 3.4410 -3.8447 10 6 5.3234 3.2105 0.2897 11 7 4.8157 3.4761 1.6575 12 6 5.5355 4.5962 2.2781 13 6 6.7278 4.0697 3.0344 14 8 6.9559 2.8787 3.0541 15 7 7.5409 4.9224 3.6891 16 6 7.2652 6.3610 3.6658 17 6 6.3580 6.7256 4.8426 18 6 8.6997 4.4104 4.4248 19 6 9.8967 4.3682 3.5102 20 1 9.8035 4.6901 2.4834 21 6 11.1109 3.9186 3.9842 22 7 12.1557 3.8822 3.1861 23 14 11.2719 3.3612 5.7597 24 1 10.9793 1.9082 5.8510 25 1 12.6549 3.6184 6.2358 26 1 10.3098 4.1140 6.6041 27 6 3.5150 3.9201 1.1096 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.9871 0.9330 0.0750 34 1 2.4118 3.7783 -1.5404 35 1 3.9418 4.6872 -1.5006 36 1 5.1192 2.7503 -2.5049 37 1 3.5901 1.8400 -2.5432 38 1 4.0200 2.9483 -4.6157 39 1 5.9075 2.2939 0.2065 40 1 5.8096 4.0695 -0.1728 41 1 5.8719 5.2856 1.5038 42 1 4.8707 5.1188 2.9659 43 1 8.2023 6.9120 3.7451 44 1 6.7691 6.6207 2.7306 45 1 6.8541 6.4658 5.7778 46 1 6.1525 7.7958 4.8250 47 1 5.4208 6.1747 4.7632 48 1 8.9114 5.0650 5.2702 49 1 8.4844 3.4056 4.7882 50 1 13.0098 3.5656 3.5196 51 1 3.4734 4.9862 0.8865 52 1 2.6553 3.5702 1.6810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425069655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:37 Heat of formation + Delta-G solvation = -82.845995 kcal Electronic energy + Delta-G solvation = -31154.525738 eV Core-core repulsion = 26962.545096 eV Total energy + Delta-G solvation = -4191.980642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18897 -39.35126 -38.49976 -37.08098 -35.33493 -34.30785 -33.09096 -32.72501 -31.48309 -30.40198 -29.52813 -27.50587 -26.43499 -25.26502 -24.23867 -22.98404 -22.60574 -21.41504 -20.66112 -19.48639 -18.39643 -17.67726 -17.40797 -16.94164 -16.60702 -16.23631 -15.92070 -15.77846 -15.52146 -15.04629 -14.72615 -14.41223 -14.36268 -14.08581 -13.67653 -13.50214 -13.47532 -13.33530 -12.87055 -12.67492 -12.46903 -12.43902 -12.29999 -12.03901 -11.99816 -11.96127 -11.78823 -11.53632 -11.45508 -11.37606 -11.16721 -10.95966 -10.78834 -10.70245 -10.50140 -10.24073 -10.15754 -9.84993 -9.55201 -9.26372 -9.12668 -8.60447 -8.59113 -7.69862 -6.10158 -4.08488 2.48603 2.89777 3.28192 3.34081 3.36329 3.38055 3.51735 3.79105 4.04927 4.12034 4.38713 4.51365 4.70455 4.79893 4.83086 4.86834 4.93063 4.97017 5.12418 5.14993 5.16808 5.23807 5.26697 5.29716 5.37714 5.43670 5.46504 5.54214 5.54658 5.63956 5.67652 5.69119 5.72723 5.73273 5.93059 5.95441 5.96999 6.13739 6.24155 6.38385 6.40669 6.67475 6.84432 6.98080 7.33546 7.35308 7.37715 7.60903 8.08074 8.28339 8.46473 8.92053 9.04423 9.50809 11.03269 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002583 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.739918 B =10835.676421 C =11003.495911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.515 3.485 4 O -0.537 6.537 5 N -0.703 5.703 6 C 0.153 3.847 7 C -0.120 4.120 8 C 0.080 3.920 9 O -0.575 6.575 10 C 0.010 3.990 11 N -0.450 5.450 12 C 0.000 4.000 13 C 0.511 3.489 14 O -0.522 6.522 15 N -0.597 5.597 16 C 0.107 3.893 17 C -0.170 4.170 18 C 0.218 3.782 19 C -0.526 4.526 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.899 5.899 23 Si 0.876 3.124 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.007 3.993 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.406 0.594 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.379 0.621 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.028 0.972 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.077 0.923 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.279 -1.839 -8.766 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.185 4.185 3 C 0.302 3.698 4 O -0.414 6.414 5 N -0.355 5.355 6 C 0.065 3.935 7 C -0.159 4.159 8 C 0.003 3.997 9 O -0.380 6.380 10 C -0.119 4.119 11 N -0.173 5.173 12 C -0.131 4.131 13 C 0.297 3.703 14 O -0.397 6.397 15 N -0.330 5.330 16 C -0.017 4.017 17 C -0.228 4.228 18 C 0.097 3.903 19 C -0.565 4.565 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.191 1.191 27 C -0.122 4.122 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.242 0.758 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.046 0.954 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.095 0.905 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.748 -1.932 -7.833 22.261 hybrid contribution 1.086 -0.246 0.121 1.120 sum -19.662 -2.178 -7.711 21.232 Atomic orbital electron populations 1.21514 0.93015 1.01494 1.03324 1.21641 0.98642 0.93836 1.04424 1.20755 0.81847 0.91862 0.75297 1.90687 1.55264 1.46427 1.48973 1.45647 1.07250 1.07710 1.74919 1.21597 0.94797 0.83304 0.93810 1.21761 1.03682 0.99093 0.91327 1.22075 0.98449 0.95535 0.83671 1.86472 1.82149 1.53641 1.15780 1.24458 0.94277 1.03628 0.89572 1.68515 1.01941 1.31315 1.15484 1.22694 0.96551 0.93945 0.99942 1.20061 0.83294 0.86814 0.80127 1.90657 1.72699 1.15562 1.60764 1.47955 1.27587 1.05822 1.51612 1.21421 1.00205 0.82548 0.97565 1.22238 0.99845 1.00887 0.99871 1.19615 0.83478 0.95136 0.92068 1.21325 0.92340 1.43929 0.98886 0.90895 1.24857 0.95634 0.94950 0.97608 1.69901 1.00946 1.47214 1.35667 0.86847 0.77453 0.79945 0.85418 1.19924 1.21106 1.19084 1.24308 0.94909 0.98401 0.94595 0.92187 0.91949 0.92065 0.89050 0.88759 0.75811 0.89497 0.90134 0.93429 0.93813 0.77457 0.88284 0.89703 0.91260 0.88512 0.89750 0.91693 0.92180 0.92002 0.93025 0.95371 0.94662 0.92597 0.90455 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.15 -1.04 6.42 -27.88 -0.18 -1.22 16 3 C 0.52 5.33 7.39 -10.99 -0.08 5.25 16 4 O -0.54 -7.34 13.97 5.56 0.08 -7.26 16 5 N -0.70 -6.74 4.58 -48.69 -0.22 -6.96 16 6 C 0.15 1.62 0.61 -133.51 -0.08 1.54 16 7 C -0.12 -1.24 4.86 -26.73 -0.13 -1.37 16 8 C 0.08 0.74 6.82 37.16 0.25 0.99 16 9 O -0.58 -5.62 13.66 -35.23 -0.48 -6.10 16 10 C 0.01 0.12 7.04 -2.57 -0.02 0.10 16 11 N -0.45 -6.35 5.66 -239.25 -1.35 -7.70 16 12 C 0.00 0.01 3.83 -4.98 -0.02 -0.01 16 13 C 0.51 10.29 7.72 -10.98 -0.08 10.21 16 14 O -0.52 -12.78 16.01 5.56 0.09 -12.69 16 15 N -0.60 -12.09 2.46 -175.06 -0.43 -12.52 16 16 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 17 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 18 C 0.22 5.31 4.23 -5.19 -0.02 5.28 16 19 C -0.53 -14.99 9.94 -34.44 -0.34 -15.33 16 20 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 21 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 22 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 23 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 27 C 0.01 0.09 6.83 -2.76 -0.02 0.07 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.41 3.25 8.66 -40.82 -0.35 2.90 16 34 H 0.09 1.08 7.06 -51.93 -0.37 0.71 16 35 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 36 H 0.05 0.40 7.98 -51.93 -0.41 -0.01 16 37 H 0.04 0.37 7.68 -51.93 -0.40 -0.03 16 38 H 0.38 1.96 9.12 45.56 0.42 2.38 16 39 H 0.10 1.28 8.09 -51.93 -0.42 0.86 16 40 H 0.08 0.97 7.41 -51.93 -0.38 0.59 16 41 H 0.07 0.89 6.64 -51.93 -0.35 0.54 16 42 H 0.10 1.23 7.13 -51.93 -0.37 0.86 16 43 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 44 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.62 7.22 -51.93 -0.38 0.25 16 48 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 49 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 50 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 51 H 0.08 0.80 7.88 -51.93 -0.41 0.39 16 52 H 0.10 1.29 7.42 -51.93 -0.39 0.91 16 LS Contribution 417.20 15.07 6.29 6.29 Total: -1.00 -37.49 417.20 -8.30 -45.79 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.25 Total: 4.35 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.12 Total: 6.66 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -1.23 Total: -53.96 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.31 Total: -26.05 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.49 -8.30 -45.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425069655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.052 kcal (2) G-P(sol) polarization free energy of solvation -37.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds