Wall clock time and date at job start Wed Apr 1 2020 00:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47326 * 2 1 4 4 O 1.21282 * 119.99664 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99974 * 179.97438 * 3 2 1 6 6 C 1.46504 * 119.99618 * 174.93661 * 5 3 2 7 7 C 1.52998 * 112.94095 * 295.51555 * 6 5 3 8 8 C 1.53006 * 109.46970 * 303.82690 * 7 6 5 9 9 O 1.42901 * 109.46780 * 179.97438 * 8 7 6 10 10 C 1.53939 * 113.73079 * 163.94832 * 6 5 3 11 11 N 1.48298 * 86.06285 * 269.30547 * 10 6 5 12 12 C 1.46896 * 111.00740 * 222.41863 * 11 10 6 13 13 C 1.50698 * 109.46952 * 269.35243 * 12 11 10 14 14 O 1.21280 * 120.00362 * 0.02562 * 13 12 11 15 15 N 1.34787 * 119.99977 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99898 * 0.02562 * 15 13 12 17 17 C 1.53000 * 109.47266 * 89.99750 * 16 15 13 18 18 C 1.46497 * 119.99878 * 179.97438 * 15 13 12 19 19 C 1.50705 * 109.46910 * 90.00158 * 18 15 13 20 20 H 1.08003 * 120.00115 * 359.97438 * 19 18 15 21 21 C 1.37876 * 119.99783 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99733 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99967 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47428 * 89.99658 * 23 21 19 25 25 H 1.48508 * 109.46989 * 209.99373 * 23 21 19 26 26 H 1.48505 * 109.47379 * 329.99138 * 23 21 19 27 27 C 1.47958 * 90.75682 * 335.31126 * 11 10 6 28 28 H 1.09005 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46758 * 299.99365 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99379 * 1 2 3 31 31 H 1.08998 * 109.46982 * 240.00166 * 2 1 3 32 32 H 1.09004 * 109.47263 * 120.00693 * 2 1 3 33 33 H 0.97000 * 120.00061 * 354.94082 * 5 3 2 34 34 H 1.09003 * 109.47215 * 63.82219 * 7 6 5 35 35 H 1.08997 * 109.47232 * 183.82656 * 7 6 5 36 36 H 1.09001 * 109.47141 * 299.92720 * 8 7 6 37 37 H 1.08996 * 109.47197 * 59.92659 * 8 7 6 38 38 H 0.96706 * 113.99395 * 179.97438 * 9 8 7 39 39 H 1.09004 * 113.75843 * 23.67979 * 10 6 5 40 40 H 1.09003 * 113.75679 * 155.04072 * 10 6 5 41 41 H 1.08990 * 109.47229 * 29.35410 * 12 11 10 42 42 H 1.08999 * 109.47054 * 149.35510 * 12 11 10 43 43 H 1.08993 * 109.47584 * 210.00260 * 16 15 13 44 44 H 1.09004 * 109.46882 * 330.00154 * 16 15 13 45 45 H 1.09002 * 109.46507 * 59.99966 * 17 16 15 46 46 H 1.08992 * 109.47392 * 180.02562 * 17 16 15 47 47 H 1.09002 * 109.47234 * 300.00155 * 17 16 15 48 48 H 1.08999 * 109.46749 * 209.99417 * 18 15 13 49 49 H 1.08997 * 109.47342 * 329.99846 * 18 15 13 50 50 H 0.97003 * 119.99346 * 180.02562 * 22 21 19 51 51 H 1.09000 * 113.75567 * 270.36727 * 27 11 10 52 52 H 1.08998 * 113.76163 * 139.00338 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8467 3.0434 -0.1115 7 6 3.4949 3.6943 -1.4507 8 6 4.0360 2.8333 -2.5939 9 8 3.7069 3.4410 -3.8447 10 6 5.3234 3.2105 0.2897 11 7 4.8157 3.4761 1.6575 12 6 5.5355 4.5962 2.2781 13 6 6.7278 4.0697 3.0344 14 8 6.9559 2.8787 3.0541 15 7 7.5409 4.9224 3.6891 16 6 7.2652 6.3610 3.6658 17 6 6.3580 6.7256 4.8426 18 6 8.6997 4.4104 4.4248 19 6 9.8967 4.3682 3.5102 20 1 9.8035 4.6901 2.4834 21 6 11.1109 3.9186 3.9842 22 7 12.1557 3.8822 3.1861 23 14 11.2719 3.3612 5.7597 24 1 10.9793 1.9082 5.8510 25 1 12.6549 3.6184 6.2358 26 1 10.3098 4.1140 6.6041 27 6 3.5150 3.9201 1.1096 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.9871 0.9330 0.0750 34 1 2.4118 3.7783 -1.5404 35 1 3.9418 4.6872 -1.5006 36 1 5.1192 2.7503 -2.5049 37 1 3.5901 1.8400 -2.5432 38 1 4.0200 2.9483 -4.6157 39 1 5.9075 2.2939 0.2065 40 1 5.8096 4.0695 -0.1728 41 1 5.8719 5.2856 1.5038 42 1 4.8707 5.1188 2.9659 43 1 8.2023 6.9120 3.7451 44 1 6.7691 6.6207 2.7306 45 1 6.8541 6.4658 5.7778 46 1 6.1525 7.7958 4.8250 47 1 5.4208 6.1747 4.7632 48 1 8.9114 5.0650 5.2702 49 1 8.4844 3.4056 4.7882 50 1 13.0098 3.5656 3.5196 51 1 3.4734 4.9862 0.8865 52 1 2.6553 3.5702 1.6810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425069655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:36 Heat of formation + Delta-G solvation = -114.828502 kcal Electronic energy + Delta-G solvation = -31155.912603 eV Core-core repulsion = 26962.545096 eV Total energy + Delta-G solvation = -4193.367507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13758 -40.64402 -39.62249 -37.83273 -36.91756 -35.27509 -34.81871 -33.76795 -32.34396 -31.90811 -30.70637 -29.14698 -27.38733 -26.26002 -25.12076 -24.39877 -23.94867 -22.60230 -21.46268 -20.36217 -19.84256 -19.10306 -18.45848 -18.21365 -17.97360 -17.33611 -17.13585 -16.69210 -16.54369 -16.34378 -15.87029 -15.74975 -15.33706 -15.20025 -14.79292 -14.71204 -14.69564 -14.42381 -14.23168 -13.93793 -13.77660 -13.52272 -13.33737 -13.21809 -13.09367 -13.02923 -12.81075 -12.61097 -12.54868 -12.48673 -12.33539 -12.18625 -12.03386 -11.99630 -11.87965 -11.74088 -11.66046 -10.96572 -10.83271 -10.72051 -10.61133 -10.12572 -9.71811 -9.38252 -8.34395 -6.38571 1.31778 1.35461 1.43812 1.69630 1.85193 2.12045 2.20378 2.30289 2.89484 3.00231 3.00463 3.26775 3.67533 3.81775 3.84962 4.00934 4.06789 4.13457 4.19794 4.24910 4.27746 4.29491 4.36006 4.37365 4.42229 4.48650 4.62246 4.62647 4.67525 4.74732 4.80041 4.82629 4.90704 4.92477 4.99055 5.00391 5.01278 5.08136 5.09137 5.24045 5.35540 5.37402 5.47036 5.58173 5.66194 5.83089 6.25275 6.58409 6.62199 6.75687 6.85341 7.22616 7.30459 7.49414 8.82417 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002583 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.739918 B =10835.676421 C =11003.495911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C 0.511 3.489 4 O -0.574 6.574 5 N -0.699 5.699 6 C 0.164 3.836 7 C -0.113 4.113 8 C 0.083 3.917 9 O -0.594 6.594 10 C 0.009 3.991 11 N -0.476 5.476 12 C 0.013 3.987 13 C 0.501 3.499 14 O -0.576 6.576 15 N -0.604 5.604 16 C 0.099 3.901 17 C -0.161 4.161 18 C 0.227 3.773 19 C -0.531 4.531 20 H 0.030 0.970 21 C 0.012 3.988 22 N -0.945 5.945 23 Si 0.945 3.055 24 H -0.277 1.277 25 H -0.275 1.275 26 H -0.241 1.241 27 C 0.013 3.987 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.414 0.586 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.397 0.603 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.045 0.955 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.015 0.985 50 H 0.268 0.732 51 H 0.097 0.903 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.667 -1.391 -8.172 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C 0.299 3.701 4 O -0.453 6.453 5 N -0.352 5.352 6 C 0.076 3.924 7 C -0.152 4.152 8 C 0.005 3.995 9 O -0.403 6.403 10 C -0.120 4.120 11 N -0.198 5.198 12 C -0.118 4.118 13 C 0.290 3.710 14 O -0.455 6.455 15 N -0.337 5.337 16 C -0.023 4.023 17 C -0.219 4.219 18 C 0.105 3.895 19 C -0.570 4.570 20 H 0.048 0.952 21 C -0.186 4.186 22 N -0.585 5.585 23 Si 0.768 3.232 24 H -0.202 1.202 25 H -0.200 1.200 26 H -0.164 1.164 27 C -0.116 4.116 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.247 0.753 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.033 0.967 50 H 0.077 0.923 51 H 0.115 0.885 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.152 -1.453 -7.256 23.355 hybrid contribution 1.522 -0.368 -0.178 1.576 sum -20.631 -1.821 -7.434 22.005 Atomic orbital electron populations 1.21506 0.93391 1.02447 1.01883 1.21697 0.98214 0.91835 1.06271 1.21356 0.81557 0.92872 0.74273 1.90671 1.56091 1.47804 1.50724 1.45664 1.07423 1.07635 1.74437 1.21431 0.93508 0.83772 0.93682 1.21672 1.02350 0.99598 0.91614 1.22041 0.98810 0.95401 0.83256 1.86419 1.82549 1.54601 1.16686 1.24466 0.95054 1.03497 0.88941 1.68457 1.03003 1.31724 1.16640 1.22636 0.94525 0.94268 1.00356 1.21081 0.84277 0.86177 0.79492 1.90620 1.74330 1.17969 1.62606 1.48084 1.26331 1.08148 1.51087 1.21749 1.00729 0.79316 1.00541 1.22159 0.99098 1.03060 0.97569 1.19246 0.83572 0.94706 0.92024 1.21536 0.94282 1.43452 0.97697 0.95175 1.25807 0.95161 0.94962 1.02657 1.70045 1.01718 1.48576 1.38145 0.85754 0.78411 0.79267 0.79754 1.20239 1.19990 1.16433 1.24297 0.93122 0.99701 0.94485 0.89978 0.93649 0.93266 0.86557 0.87331 0.74866 0.91456 0.89749 0.92677 0.93183 0.75275 0.89488 0.88822 0.89001 0.86013 0.90964 0.88685 0.93591 0.88754 0.92227 0.93729 0.96716 0.92304 0.88529 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.20 71.98 0.66 -1.23 16 2 C -0.14 -1.77 6.42 29.85 0.19 -1.58 16 3 C 0.51 10.17 7.39 87.66 0.65 10.82 16 4 O -0.57 -15.63 13.97 -3.03 -0.04 -15.67 16 5 N -0.70 -12.80 4.58 -426.34 -1.95 -14.75 16 6 C 0.16 3.33 0.61 5.17 0.00 3.33 16 7 C -0.11 -2.23 4.86 30.60 0.15 -2.08 16 8 C 0.08 1.41 6.82 71.98 0.49 1.90 16 9 O -0.59 -10.80 13.66 -148.98 -2.04 -12.83 16 10 C 0.01 0.22 7.04 86.35 0.61 0.83 16 11 N -0.48 -12.89 5.66 -910.85 -5.15 -18.04 16 12 C 0.01 0.36 3.83 85.56 0.33 0.69 16 13 C 0.50 20.02 7.72 87.65 0.68 20.70 16 14 O -0.58 -28.82 16.01 -3.03 -0.05 -28.87 16 15 N -0.60 -24.16 2.46 -826.15 -2.03 -26.19 16 16 C 0.10 2.82 5.93 86.38 0.51 3.33 16 17 C -0.16 -3.53 10.24 71.98 0.74 -2.80 16 18 C 0.23 11.09 4.23 85.64 0.36 11.46 16 19 C -0.53 -31.07 9.94 25.60 0.25 -30.81 16 20 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 21 C 0.01 0.71 5.47 84.65 0.46 1.18 16 22 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 23 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 27 C 0.01 0.29 6.83 86.41 0.59 0.88 16 28 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 30 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.41 6.24 8.66 -92.71 -0.80 5.44 16 34 H 0.07 1.63 7.06 -2.39 -0.02 1.62 16 35 H 0.08 1.58 8.11 -2.39 -0.02 1.56 16 36 H 0.05 0.86 7.98 -2.39 -0.02 0.84 16 37 H 0.05 0.78 7.68 -2.39 -0.02 0.76 16 38 H 0.40 3.52 9.12 -74.05 -0.68 2.84 16 39 H 0.09 2.25 8.09 -2.38 -0.02 2.23 16 40 H 0.09 2.02 7.41 -2.39 -0.02 2.00 16 41 H 0.09 2.09 6.64 -2.39 -0.02 2.07 16 42 H 0.12 2.69 7.13 -2.39 -0.02 2.68 16 43 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 44 H 0.09 2.12 6.44 -2.38 -0.02 2.11 16 45 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 1.23 7.22 -2.39 -0.02 1.21 16 48 H 0.04 2.03 7.13 -2.39 -0.02 2.01 16 49 H 0.01 0.78 6.85 -2.39 -0.02 0.77 16 50 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 51 H 0.10 1.75 7.88 -2.39 -0.02 1.73 16 52 H 0.08 2.13 7.42 -2.39 -0.02 2.12 16 Total: -1.00 -85.24 417.20 -3.01 -88.25 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.61 Total: 24.09 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.68 Total: 16.61 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -8.83 Total: -118.07 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -2.13 Total: -57.37 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -85.24 -3.01 -88.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425069655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.580 kcal (2) G-P(sol) polarization free energy of solvation -85.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds