Wall clock time and date at job start Wed Apr 1 2020 00:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47392 * 2 1 4 4 O 1.21278 * 119.99825 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00067 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99937 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47020 * 180.02562 * 6 5 3 8 8 O 1.42909 * 110.27195 * 302.08564 * 7 6 5 9 9 C 1.54587 * 110.39725 * 64.23157 * 7 6 5 10 10 C 1.54933 * 102.92328 * 140.91459 * 9 7 6 11 11 N 1.48532 * 103.22768 * 322.59096 * 10 9 7 12 12 C 1.46901 * 111.00008 * 159.72124 * 11 10 9 13 13 C 1.50698 * 109.47178 * 52.59978 * 12 11 10 14 14 O 1.21279 * 120.00322 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99969 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99744 * 359.97438 * 15 13 12 17 17 C 1.52997 * 109.47261 * 269.99948 * 16 15 13 18 18 C 1.46497 * 120.00178 * 180.02562 * 15 13 12 19 19 C 1.50694 * 109.47115 * 270.00180 * 18 15 13 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 15 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 15 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.47894 * 105.82080 * 39.20597 * 11 10 9 28 28 H 1.08997 * 109.46962 * 300.00188 * 1 2 3 29 29 H 1.08996 * 109.46929 * 60.00035 * 1 2 3 30 30 H 1.08994 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47170 * 239.99940 * 2 1 3 32 32 H 1.09005 * 109.46984 * 120.00177 * 2 1 3 33 33 H 0.96999 * 119.99735 * 359.97438 * 5 3 2 34 34 H 1.09005 * 109.47077 * 59.99825 * 6 5 3 35 35 H 1.09005 * 109.47264 * 299.99947 * 6 5 3 36 36 H 0.96698 * 113.99639 * 57.91717 * 8 7 6 37 37 H 1.09002 * 110.72890 * 259.27646 * 9 7 6 38 38 H 1.09007 * 110.72406 * 22.38147 * 9 7 6 39 39 H 1.08997 * 110.66741 * 204.15209 * 10 9 7 40 40 H 1.09000 * 110.66386 * 81.02346 * 10 9 7 41 41 H 1.09002 * 109.47041 * 292.59749 * 12 11 10 42 42 H 1.09000 * 109.47098 * 172.60719 * 12 11 10 43 43 H 1.09000 * 109.47148 * 30.00599 * 16 15 13 44 44 H 1.09004 * 109.46943 * 149.99854 * 16 15 13 45 45 H 1.08995 * 109.47315 * 299.99705 * 17 16 15 46 46 H 1.08994 * 109.47068 * 60.00565 * 17 16 15 47 47 H 1.09000 * 109.46997 * 180.02562 * 17 16 15 48 48 H 1.09007 * 109.47078 * 149.99819 * 18 15 13 49 49 H 1.09003 * 109.46733 * 30.00541 * 18 15 13 50 50 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 51 51 H 1.08994 * 109.92041 * 94.02454 * 27 11 10 52 52 H 1.09010 * 109.91700 * 215.11941 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3576 1.6670 -0.0005 6 6 3.8459 3.0482 0.0000 7 6 5.3759 3.0482 -0.0014 8 8 5.8721 2.3352 1.1335 9 6 5.9134 2.4192 -1.3072 10 6 7.1326 3.3132 -1.6461 11 7 6.6781 4.6713 -1.2521 12 6 7.8219 5.5695 -1.0443 13 6 8.7140 5.5360 -2.2584 14 8 8.4253 4.8335 -3.2039 15 7 9.8328 6.2867 -2.2934 16 6 10.1812 7.1358 -1.1514 17 6 9.5543 8.5193 -1.3344 18 6 10.6998 6.2546 -3.4739 19 6 11.7343 5.1716 -3.3080 20 1 11.7452 4.5677 -2.4126 21 6 12.6676 4.9521 -4.2989 22 7 12.6547 5.6877 -5.3890 23 14 13.9505 3.6100 -4.0929 24 1 14.8293 3.5774 -5.2896 25 1 14.7683 3.8881 -2.8850 26 1 13.2733 2.2972 -3.9408 27 6 5.9105 4.4923 -0.0008 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9878 0.9297 -0.0005 34 1 3.4830 3.5616 0.8905 35 1 3.4822 3.5626 -0.8895 36 1 5.5682 1.4187 1.1858 37 1 6.2258 1.3885 -1.1389 38 1 5.1635 2.4694 -2.0967 39 1 7.3525 3.2755 -2.7130 40 1 8.0030 3.0143 -1.0621 41 1 8.3855 5.2436 -0.1701 42 1 7.4615 6.5859 -0.8860 43 1 9.8035 6.6840 -0.2342 44 1 11.2651 7.2334 -1.0886 45 1 9.9321 8.9710 -2.2516 46 1 8.4705 8.4217 -1.3971 47 1 9.8139 9.1511 -0.4850 48 1 11.1971 7.2182 -3.5857 49 1 10.0991 6.0508 -4.3603 50 1 13.3115 5.5336 -6.0859 51 1 6.5615 4.6470 0.8596 52 1 5.0807 5.1986 0.0301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001446719489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:41 Heat of formation + Delta-G solvation = -113.205204 kcal Electronic energy + Delta-G solvation = -30724.205766 eV Core-core repulsion = 26530.908650 eV Total energy + Delta-G solvation = -4193.297116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.57776 -39.68716 -38.72457 -36.27290 -35.16948 -34.59096 -33.18402 -32.84954 -31.51621 -30.10464 -29.50018 -28.07414 -26.62563 -25.24742 -23.75100 -23.05997 -22.54088 -21.49434 -20.74873 -20.38268 -18.43765 -17.94383 -17.05494 -16.60896 -16.35215 -16.18231 -16.02843 -15.88192 -15.34014 -14.96331 -14.80488 -14.42446 -14.18918 -14.06006 -13.79021 -13.52092 -13.39100 -13.20200 -12.93640 -12.71857 -12.61764 -12.48783 -12.14713 -12.12428 -12.00587 -11.85358 -11.61301 -11.55160 -11.38394 -11.32720 -11.14177 -11.02097 -10.92569 -10.71045 -10.53369 -10.27772 -10.16978 -10.05034 -9.66289 -9.47709 -8.82322 -8.44608 -8.30687 -7.66383 -6.05415 -4.10272 2.30677 2.75010 3.29723 3.34273 3.35253 3.42316 3.51017 3.91500 4.14209 4.21879 4.35621 4.42173 4.46293 4.58961 4.66865 4.68334 5.00521 5.11701 5.17515 5.25580 5.26895 5.28927 5.37893 5.38601 5.44392 5.47571 5.52969 5.53659 5.57819 5.62450 5.66530 5.77388 5.80650 5.83628 6.00581 6.02960 6.04848 6.22448 6.39647 6.48439 6.86338 6.89618 7.04046 7.11690 7.24743 7.44964 7.55330 7.85718 7.91045 8.22587 8.42069 8.89066 9.10252 9.54663 11.02475 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.002246 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.528976 B =12464.453650 C =13423.364654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.511 3.489 4 O -0.537 6.537 5 N -0.732 5.732 6 C 0.102 3.898 7 C 0.111 3.889 8 O -0.550 6.550 9 C -0.151 4.151 10 C 0.037 3.963 11 N -0.496 5.496 12 C 0.026 3.974 13 C 0.507 3.493 14 O -0.528 6.528 15 N -0.597 5.597 16 C 0.106 3.894 17 C -0.169 4.169 18 C 0.248 3.752 19 C -0.526 4.526 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.286 1.286 25 H -0.277 1.277 26 H -0.277 1.277 27 C 0.049 3.951 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.397 0.603 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.371 0.629 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.032 0.968 49 H 0.044 0.956 50 H 0.264 0.736 51 H 0.063 0.937 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.567 -7.479 14.636 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.298 3.702 4 O -0.414 6.414 5 N -0.386 5.386 6 C -0.022 4.022 7 C 0.070 3.930 8 O -0.355 6.355 9 C -0.189 4.189 10 C -0.089 4.089 11 N -0.220 5.220 12 C -0.105 4.105 13 C 0.293 3.707 14 O -0.405 6.405 15 N -0.329 5.329 16 C -0.019 4.019 17 C -0.228 4.228 18 C 0.129 3.871 19 C -0.565 4.565 20 H 0.073 0.927 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.212 1.212 25 H -0.203 1.203 26 H -0.202 1.202 27 C -0.079 4.079 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.231 0.769 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.219 0.781 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.081 0.919 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.193 -6.301 13.645 23.598 hybrid contribution 1.533 -1.834 0.713 2.494 sum -16.659 -8.135 14.358 23.449 Atomic orbital electron populations 1.21530 0.92901 1.01671 1.03448 1.21648 0.98853 0.93569 1.04424 1.20819 0.81831 0.92016 0.75527 1.90723 1.55168 1.46646 1.48827 1.45991 1.07396 1.08772 1.76412 1.22074 0.93243 0.83267 1.03639 1.22321 0.90888 0.93629 0.86177 1.86645 1.74610 1.28071 1.46202 1.23284 0.99441 0.99326 0.96843 1.23479 0.94629 0.86069 1.04768 1.64775 1.20485 1.10379 1.26394 1.22354 0.91864 0.99268 0.97008 1.20054 0.81507 0.80741 0.88407 1.90590 1.72414 1.39990 1.37507 1.48246 1.23306 1.42310 1.19050 1.21423 1.01368 0.90311 0.88753 1.22220 1.00825 0.97473 1.02247 1.19255 0.88379 0.97044 0.82462 1.21379 1.13354 1.17789 1.03956 0.92664 1.24938 0.97780 0.96401 0.95003 1.69924 1.36117 1.39647 1.07587 0.86571 0.81118 0.82364 0.77413 1.21172 1.20297 1.20249 1.22813 0.99251 0.93040 0.92834 0.91984 0.91891 0.92004 0.88775 0.88885 0.76899 0.90604 0.89738 0.78118 0.90618 0.89698 0.86162 0.93888 0.92200 0.88259 0.91942 0.89944 0.91986 0.92963 0.92189 0.95050 0.93843 0.92668 0.91911 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.16 0.34 -0.53 16 2 C -0.14 -0.78 6.42 -27.88 -0.18 -0.96 16 3 C 0.51 4.58 7.83 -10.98 -0.09 4.50 16 4 O -0.54 -7.21 15.98 5.56 0.09 -7.12 16 5 N -0.73 -5.26 5.14 -60.29 -0.31 -5.57 16 6 C 0.10 0.93 4.50 -4.04 -0.02 0.92 16 7 C 0.11 1.08 1.06 -89.27 -0.09 0.99 16 8 O -0.55 -5.13 12.94 -35.23 -0.46 -5.59 16 9 C -0.15 -1.62 5.92 -24.88 -0.15 -1.77 16 10 C 0.04 0.57 5.30 -1.90 -0.01 0.56 16 11 N -0.50 -7.24 5.26 -231.90 -1.22 -8.46 16 12 C 0.03 0.40 4.07 -4.98 -0.02 0.38 16 13 C 0.51 10.30 7.38 -10.99 -0.08 10.22 16 14 O -0.53 -12.76 13.10 5.56 0.07 -12.68 16 15 N -0.60 -12.36 2.46 -175.06 -0.43 -12.79 16 16 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 17 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 18 C 0.25 6.39 5.16 -5.20 -0.03 6.37 16 19 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 20 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 23 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.05 0.56 6.17 -2.76 -0.02 0.55 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 1.71 7.22 -40.82 -0.29 1.41 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 36 H 0.37 2.02 7.78 45.56 0.35 2.37 16 37 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.08 0.92 7.85 -51.92 -0.41 0.52 16 39 H 0.12 2.24 5.97 -51.93 -0.31 1.93 16 40 H 0.04 0.70 8.02 -51.93 -0.42 0.28 16 41 H 0.06 0.84 7.07 -51.93 -0.37 0.47 16 42 H 0.10 1.30 7.19 -51.93 -0.37 0.93 16 43 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 44 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 49 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.06 0.73 7.39 -51.93 -0.38 0.34 16 52 H 0.09 0.94 7.69 -51.92 -0.40 0.54 16 LS Contribution 413.81 15.07 6.24 6.24 Total: -1.00 -35.71 413.81 -9.00 -44.71 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.29 Total: 2.67 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -0.40 Total: 7.59 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -1.22 Total: -52.48 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.29 Total: -25.39 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.71 -9.00 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446719489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.496 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds