Wall clock time and date at job start Wed Apr 1 2020 00:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47392 * 2 1 4 4 O 1.21278 * 119.99825 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00067 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99937 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47020 * 180.02562 * 6 5 3 8 8 O 1.42909 * 110.27195 * 302.08564 * 7 6 5 9 9 C 1.54587 * 110.39725 * 64.23157 * 7 6 5 10 10 C 1.54933 * 102.92328 * 140.91459 * 9 7 6 11 11 N 1.48532 * 103.22768 * 322.59096 * 10 9 7 12 12 C 1.46901 * 111.00008 * 159.72124 * 11 10 9 13 13 C 1.50698 * 109.47178 * 52.59978 * 12 11 10 14 14 O 1.21279 * 120.00322 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99969 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99744 * 359.97438 * 15 13 12 17 17 C 1.52997 * 109.47261 * 269.99948 * 16 15 13 18 18 C 1.46497 * 120.00178 * 180.02562 * 15 13 12 19 19 C 1.50694 * 109.47115 * 270.00180 * 18 15 13 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 15 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 15 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.47894 * 105.82080 * 39.20597 * 11 10 9 28 28 H 1.08997 * 109.46962 * 300.00188 * 1 2 3 29 29 H 1.08996 * 109.46929 * 60.00035 * 1 2 3 30 30 H 1.08994 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47170 * 239.99940 * 2 1 3 32 32 H 1.09005 * 109.46984 * 120.00177 * 2 1 3 33 33 H 0.96999 * 119.99735 * 359.97438 * 5 3 2 34 34 H 1.09005 * 109.47077 * 59.99825 * 6 5 3 35 35 H 1.09005 * 109.47264 * 299.99947 * 6 5 3 36 36 H 0.96698 * 113.99639 * 57.91717 * 8 7 6 37 37 H 1.09002 * 110.72890 * 259.27646 * 9 7 6 38 38 H 1.09007 * 110.72406 * 22.38147 * 9 7 6 39 39 H 1.08997 * 110.66741 * 204.15209 * 10 9 7 40 40 H 1.09000 * 110.66386 * 81.02346 * 10 9 7 41 41 H 1.09002 * 109.47041 * 292.59749 * 12 11 10 42 42 H 1.09000 * 109.47098 * 172.60719 * 12 11 10 43 43 H 1.09000 * 109.47148 * 30.00599 * 16 15 13 44 44 H 1.09004 * 109.46943 * 149.99854 * 16 15 13 45 45 H 1.08995 * 109.47315 * 299.99705 * 17 16 15 46 46 H 1.08994 * 109.47068 * 60.00565 * 17 16 15 47 47 H 1.09000 * 109.46997 * 180.02562 * 17 16 15 48 48 H 1.09007 * 109.47078 * 149.99819 * 18 15 13 49 49 H 1.09003 * 109.46733 * 30.00541 * 18 15 13 50 50 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 51 51 H 1.08994 * 109.92041 * 94.02454 * 27 11 10 52 52 H 1.09010 * 109.91700 * 215.11941 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3576 1.6670 -0.0005 6 6 3.8459 3.0482 0.0000 7 6 5.3759 3.0482 -0.0014 8 8 5.8721 2.3352 1.1335 9 6 5.9134 2.4192 -1.3072 10 6 7.1326 3.3132 -1.6461 11 7 6.6781 4.6713 -1.2521 12 6 7.8219 5.5695 -1.0443 13 6 8.7140 5.5360 -2.2584 14 8 8.4253 4.8335 -3.2039 15 7 9.8328 6.2867 -2.2934 16 6 10.1812 7.1358 -1.1514 17 6 9.5543 8.5193 -1.3344 18 6 10.6998 6.2546 -3.4739 19 6 11.7343 5.1716 -3.3080 20 1 11.7452 4.5677 -2.4126 21 6 12.6676 4.9521 -4.2989 22 7 12.6547 5.6877 -5.3890 23 14 13.9505 3.6100 -4.0929 24 1 14.8293 3.5774 -5.2896 25 1 14.7683 3.8881 -2.8850 26 1 13.2733 2.2972 -3.9408 27 6 5.9105 4.4923 -0.0008 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9878 0.9297 -0.0005 34 1 3.4830 3.5616 0.8905 35 1 3.4822 3.5626 -0.8895 36 1 5.5682 1.4187 1.1858 37 1 6.2258 1.3885 -1.1389 38 1 5.1635 2.4694 -2.0967 39 1 7.3525 3.2755 -2.7130 40 1 8.0030 3.0143 -1.0621 41 1 8.3855 5.2436 -0.1701 42 1 7.4615 6.5859 -0.8860 43 1 9.8035 6.6840 -0.2342 44 1 11.2651 7.2334 -1.0886 45 1 9.9321 8.9710 -2.2516 46 1 8.4705 8.4217 -1.3971 47 1 9.8139 9.1511 -0.4850 48 1 11.1971 7.2182 -3.5857 49 1 10.0991 6.0508 -4.3603 50 1 13.3115 5.5336 -6.0859 51 1 6.5615 4.6470 0.8596 52 1 5.0807 5.1986 0.0301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001446719489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:40 Heat of formation + Delta-G solvation = -142.858665 kcal Electronic energy + Delta-G solvation = -30725.491637 eV Core-core repulsion = 26530.908650 eV Total energy + Delta-G solvation = -4194.582986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51299 -40.79535 -39.88429 -37.39375 -36.68615 -35.31268 -34.92602 -33.70846 -32.58976 -31.58330 -30.42509 -29.60252 -27.97077 -26.34442 -24.77977 -24.40090 -23.94723 -22.64635 -21.51063 -21.16523 -19.94322 -18.68262 -18.60287 -18.03042 -17.74734 -17.20558 -17.06362 -16.74758 -16.57042 -16.26482 -16.05121 -15.77499 -15.20592 -15.03662 -14.82967 -14.67699 -14.53849 -14.37204 -14.12911 -13.78530 -13.66781 -13.60115 -13.28356 -13.23447 -13.14840 -13.10805 -12.75210 -12.66898 -12.63509 -12.55441 -12.38747 -12.35889 -12.13607 -12.01117 -11.92331 -11.81623 -11.72968 -11.08249 -10.89216 -10.64733 -10.38584 -10.17649 -9.50233 -9.39916 -8.22436 -6.37476 1.35312 1.39312 1.46815 1.64619 1.83445 2.11071 2.21787 2.39904 2.88026 3.06593 3.16159 3.39026 3.53348 3.68402 3.73588 3.84574 4.06405 4.19358 4.23333 4.25592 4.28991 4.31768 4.37109 4.45322 4.55464 4.63156 4.64634 4.69320 4.75939 4.78887 4.93235 4.96080 4.97794 5.01021 5.01761 5.05525 5.07925 5.16482 5.22033 5.28918 5.38987 5.40733 5.58220 5.73725 5.84589 5.90658 6.06550 6.47605 6.69004 6.69944 6.81198 7.23946 7.28352 7.51315 8.84201 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.002246 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.528976 B =12464.453650 C =13423.364654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.138 4.138 3 C 0.505 3.495 4 O -0.589 6.589 5 N -0.719 5.719 6 C 0.111 3.889 7 C 0.129 3.871 8 O -0.557 6.557 9 C -0.140 4.140 10 C 0.037 3.963 11 N -0.511 5.511 12 C 0.041 3.959 13 C 0.496 3.504 14 O -0.577 6.577 15 N -0.604 5.604 16 C 0.099 3.901 17 C -0.161 4.161 18 C 0.264 3.736 19 C -0.540 4.540 20 H 0.052 0.948 21 C 0.006 3.994 22 N -0.928 5.928 23 Si 0.967 3.033 24 H -0.279 1.279 25 H -0.261 1.261 26 H -0.277 1.277 27 C 0.046 3.954 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.414 0.586 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.390 0.610 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.020 0.980 49 H -0.004 1.004 50 H 0.267 0.733 51 H 0.069 0.931 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.757 -9.043 17.572 26.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.294 3.706 4 O -0.469 6.469 5 N -0.373 5.373 6 C -0.014 4.014 7 C 0.087 3.913 8 O -0.365 6.365 9 C -0.178 4.178 10 C -0.091 4.091 11 N -0.236 5.236 12 C -0.090 4.090 13 C 0.284 3.716 14 O -0.457 6.457 15 N -0.335 5.335 16 C -0.023 4.023 17 C -0.219 4.219 18 C 0.143 3.857 19 C -0.579 4.579 20 H 0.070 0.930 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.792 3.208 24 H -0.204 1.204 25 H -0.185 1.185 26 H -0.202 1.202 27 C -0.081 4.081 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.240 0.760 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.145 0.855 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.038 0.962 49 H 0.014 0.986 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.366 -7.879 16.635 26.002 hybrid contribution 1.573 -1.331 -0.211 2.071 sum -16.794 -9.209 16.424 25.231 Atomic orbital electron populations 1.21547 0.93899 1.02569 1.01744 1.21708 0.97907 0.91277 1.06831 1.21539 0.81735 0.93053 0.74268 1.90706 1.56480 1.48452 1.51308 1.45866 1.07415 1.08576 1.75446 1.21843 0.92613 0.84271 1.02669 1.22001 0.90844 0.92729 0.85739 1.86617 1.74790 1.29591 1.45519 1.23224 0.97379 0.99810 0.97402 1.23261 0.96140 0.87749 1.01915 1.64734 1.20317 1.09952 1.28632 1.22280 0.91357 1.01103 0.94267 1.21055 0.81558 0.79436 0.89536 1.90585 1.73561 1.41809 1.39770 1.48272 1.22968 1.43373 1.18922 1.21744 1.01298 0.91178 0.88077 1.22150 1.01014 0.96096 1.02632 1.18669 0.87902 0.95843 0.83288 1.21646 1.14006 1.18275 1.03979 0.92982 1.25879 1.00053 0.98793 0.94569 1.70053 1.37054 1.41272 1.08384 0.85474 0.78374 0.78858 0.78138 1.20397 1.18525 1.20237 1.22906 0.99301 0.94646 0.91292 0.93517 0.93862 0.89709 0.86533 0.85981 0.74890 0.91023 0.91376 0.75958 0.88225 0.89927 0.90459 0.95312 0.90271 0.85522 0.88438 0.91001 0.94331 0.92069 0.88598 0.96196 0.98611 0.92439 0.91306 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.20 71.98 0.66 -0.92 16 2 C -0.14 -1.10 6.42 29.85 0.19 -0.91 16 3 C 0.51 8.25 7.83 87.65 0.69 8.94 16 4 O -0.59 -15.75 15.98 -3.02 -0.05 -15.80 16 5 N -0.72 -8.64 5.14 -463.05 -2.38 -11.02 16 6 C 0.11 1.84 4.50 86.38 0.39 2.23 16 7 C 0.13 2.21 1.06 -9.92 -0.01 2.20 16 8 O -0.56 -8.54 12.94 -148.98 -1.93 -10.47 16 9 C -0.14 -2.81 5.92 31.80 0.19 -2.63 16 10 C 0.04 1.13 5.30 86.65 0.46 1.59 16 11 N -0.51 -14.54 5.26 -887.59 -4.67 -19.20 16 12 C 0.04 1.18 4.07 85.56 0.35 1.52 16 13 C 0.50 20.62 7.38 87.66 0.65 21.27 16 14 O -0.58 -29.55 13.10 -3.03 -0.04 -29.59 16 15 N -0.60 -25.59 2.46 -826.15 -2.03 -27.62 16 16 C 0.10 3.01 5.93 86.38 0.51 3.52 16 17 C -0.16 -3.97 10.24 71.98 0.74 -3.24 16 18 C 0.26 14.39 5.16 85.63 0.44 14.84 16 19 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 20 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 21 C 0.01 0.35 5.46 84.66 0.46 0.81 16 22 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 23 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 C 0.05 0.96 6.17 86.45 0.53 1.49 16 28 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 29 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.41 2.13 7.22 -92.71 -0.67 1.46 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.07 1.40 8.11 -2.38 -0.02 1.38 16 36 H 0.39 2.70 7.78 -74.06 -0.58 2.13 16 37 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 38 H 0.08 1.72 7.85 -2.38 -0.02 1.70 16 39 H 0.08 3.07 5.97 -2.39 -0.01 3.05 16 40 H 0.03 0.94 8.02 -2.39 -0.02 0.92 16 41 H 0.08 2.00 7.07 -2.39 -0.02 1.99 16 42 H 0.13 2.96 7.19 -2.39 -0.02 2.94 16 43 H 0.10 2.28 6.44 -2.39 -0.02 2.26 16 44 H 0.07 2.33 8.07 -2.38 -0.02 2.31 16 45 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.40 7.22 -2.39 -0.02 1.39 16 47 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.02 1.11 8.07 -2.38 -0.02 1.09 16 49 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 50 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 51 H 0.07 1.37 7.39 -2.39 -0.02 1.35 16 52 H 0.11 1.92 7.69 -2.38 -0.02 1.90 16 Total: -1.00 -84.06 413.81 -2.62 -86.68 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -0.32 Total: 16.60 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 6.49 Total: 19.73 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -8.79 Total: -114.06 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -2.02 Total: -55.86 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -84.06 -2.62 -86.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446719489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.179 kcal (2) G-P(sol) polarization free energy of solvation -84.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds