Wall clock time and date at job start Wed Apr 1 2020 00:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47052 * 2 1 4 4 O 1.21285 * 120.00060 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99969 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99972 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47055 * 180.02562 * 6 5 3 8 8 O 1.42900 * 110.63023 * 61.89446 * 7 6 5 9 9 C 1.55139 * 110.70659 * 298.59633 * 7 6 5 10 10 C 1.54904 * 101.65629 * 205.96492 * 9 7 6 11 11 N 1.47843 * 104.79405 * 37.06983 * 10 9 7 12 12 C 1.46900 * 110.99888 * 213.63369 * 11 10 9 13 13 C 1.50691 * 109.47193 * 290.84246 * 12 11 10 14 14 O 1.21280 * 120.00580 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99768 * 179.97438 * 13 12 11 16 16 C 1.46491 * 120.00085 * 0.02562 * 15 13 12 17 17 C 1.53005 * 109.47391 * 89.99666 * 16 15 13 18 18 C 1.46503 * 119.99632 * 180.02562 * 15 13 12 19 19 C 1.50694 * 109.47289 * 90.00306 * 18 15 13 20 20 H 1.08005 * 119.99866 * 359.97438 * 19 18 15 21 21 C 1.37873 * 120.00347 * 179.97438 * 19 18 15 22 22 N 1.31511 * 120.00479 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99732 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46836 * 90.00359 * 23 21 19 25 25 H 1.48498 * 109.47204 * 209.99942 * 23 21 19 26 26 H 1.48493 * 109.47549 * 330.00383 * 23 21 19 27 27 C 1.47446 * 108.56761 * 335.90448 * 11 10 9 28 28 H 1.09004 * 109.46987 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47620 * 299.99791 * 1 2 3 30 30 H 1.09004 * 109.47052 * 60.00220 * 1 2 3 31 31 H 1.08996 * 109.47323 * 239.99558 * 2 1 3 32 32 H 1.09004 * 109.47052 * 119.99779 * 2 1 3 33 33 H 0.96998 * 120.00179 * 0.02562 * 5 3 2 34 34 H 1.08996 * 109.47474 * 60.00037 * 6 5 3 35 35 H 1.09004 * 109.46952 * 300.00228 * 6 5 3 36 36 H 0.96705 * 114.00119 * 303.10121 * 8 7 6 37 37 H 1.09005 * 110.98834 * 324.06035 * 9 7 6 38 38 H 1.09000 * 110.99151 * 87.83473 * 9 7 6 39 39 H 1.08998 * 110.37178 * 278.24131 * 10 9 7 40 40 H 1.09003 * 110.37142 * 155.89745 * 10 9 7 41 41 H 1.08998 * 109.47082 * 50.84605 * 12 11 10 42 42 H 1.09000 * 109.46598 * 170.84099 * 12 11 10 43 43 H 1.08997 * 109.47240 * 210.00027 * 16 15 13 44 44 H 1.09006 * 109.47060 * 329.99814 * 16 15 13 45 45 H 1.08998 * 109.46753 * 179.97438 * 17 16 15 46 46 H 1.08997 * 109.46702 * 300.00293 * 17 16 15 47 47 H 1.09000 * 109.46489 * 59.99922 * 17 16 15 48 48 H 1.09006 * 109.46828 * 210.00172 * 18 15 13 49 49 H 1.08993 * 109.47210 * 329.99681 * 18 15 13 50 50 H 0.96994 * 120.00484 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.88511 * 120.39826 * 27 11 10 52 52 H 1.08995 * 109.88851 * 241.42128 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3757 3.0483 0.0010 8 8 5.8791 2.4188 -1.1790 9 6 5.9243 2.3532 1.2748 10 6 7.3109 3.0270 1.4265 11 7 7.0947 4.4315 1.0185 12 6 8.2863 4.9760 0.3541 13 6 9.3960 5.1322 1.3616 14 8 9.2125 4.8202 2.5191 15 7 10.5928 5.6177 0.9761 16 6 10.8146 5.9941 -0.4222 17 6 10.4415 7.4647 -0.6199 18 6 11.6717 5.7690 1.9555 19 6 12.4853 4.5016 2.0065 20 1 12.2244 3.6666 1.3730 21 6 13.5626 4.4077 2.8618 22 7 14.2729 3.3018 2.9059 23 14 14.0141 5.8521 3.9569 24 1 13.2939 5.7366 5.2505 25 1 15.4785 5.8474 4.2036 26 1 13.6290 7.1204 3.2875 27 6 5.9213 4.4862 0.1273 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9298 0.0005 34 1 3.4821 3.5619 0.8910 35 1 3.4826 3.5624 -0.8889 36 1 5.5661 1.5125 -1.3054 37 1 5.2917 2.5630 2.1373 38 1 6.0264 1.2790 1.1202 39 1 8.0387 2.5491 0.7708 40 1 7.6442 2.9800 2.4632 41 1 8.6052 4.2952 -0.4352 42 1 8.0488 5.9479 -0.0785 43 1 11.8647 5.8485 -0.6754 44 1 10.1953 5.3721 -1.0685 45 1 10.6070 7.7448 -1.6602 46 1 9.3914 7.6103 -0.3666 47 1 11.0607 8.0867 0.0265 48 1 12.3130 6.6009 1.6640 49 1 11.2449 5.9666 2.9387 50 1 15.0305 3.2357 3.5079 51 1 5.1590 5.1357 0.5576 52 1 6.2171 4.8606 -0.8526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001446719538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:44 Heat of formation + Delta-G solvation = -143.646649 kcal Electronic energy + Delta-G solvation = -30699.635001 eV Core-core repulsion = 26505.017845 eV Total energy + Delta-G solvation = -4194.617156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47619 -40.76856 -39.94121 -37.30221 -36.72808 -35.33687 -34.87069 -33.71414 -32.64526 -31.76969 -30.52543 -29.91510 -28.09911 -26.35651 -24.48890 -24.40300 -23.90248 -22.45246 -21.57586 -21.16086 -19.91531 -19.11349 -18.64876 -18.08846 -17.78268 -17.26405 -16.96141 -16.74241 -16.51515 -16.35713 -15.95535 -15.70764 -15.34712 -15.04600 -14.72168 -14.69991 -14.68156 -14.46121 -14.08748 -13.89572 -13.69214 -13.67302 -13.39413 -13.35301 -13.21194 -13.13407 -12.76932 -12.63994 -12.57484 -12.52796 -12.37402 -12.28034 -12.04383 -12.01340 -11.97627 -11.83805 -11.74706 -11.05087 -10.91302 -10.83810 -10.58229 -10.17996 -9.40037 -9.34919 -8.34803 -6.39260 1.31395 1.35471 1.43853 1.64400 1.83612 2.09318 2.23467 2.30014 2.95612 2.99676 3.01252 3.39062 3.46367 3.69375 3.76606 3.84596 4.06768 4.15500 4.22442 4.24473 4.27160 4.30675 4.33831 4.42583 4.50794 4.61702 4.64510 4.68426 4.76590 4.79563 4.81187 4.91010 4.92355 4.99583 5.01107 5.01492 5.04192 5.05912 5.07779 5.28643 5.38577 5.40565 5.46731 5.66105 5.81795 5.93549 6.24851 6.47447 6.61330 6.67617 6.74852 7.21709 7.23434 7.48203 8.82029 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.002137 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.398448 B =13102.189986 C =13779.526568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.139 4.139 3 C 0.506 3.494 4 O -0.589 6.589 5 N -0.720 5.720 6 C 0.112 3.888 7 C 0.116 3.884 8 O -0.556 6.556 9 C -0.142 4.142 10 C 0.052 3.948 11 N -0.524 5.524 12 C 0.048 3.952 13 C 0.499 3.501 14 O -0.577 6.577 15 N -0.603 5.603 16 C 0.099 3.901 17 C -0.160 4.160 18 C 0.227 3.773 19 C -0.533 4.533 20 H 0.027 0.973 21 C 0.010 3.990 22 N -0.944 5.944 23 Si 0.947 3.053 24 H -0.277 1.277 25 H -0.274 1.274 26 H -0.240 1.240 27 C 0.054 3.946 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.414 0.586 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.390 0.610 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.033 0.967 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.016 0.984 50 H 0.268 0.732 51 H 0.106 0.894 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.439 -3.039 -12.258 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.295 3.705 4 O -0.469 6.469 5 N -0.373 5.373 6 C -0.013 4.013 7 C 0.074 3.926 8 O -0.364 6.364 9 C -0.180 4.180 10 C -0.076 4.076 11 N -0.249 5.249 12 C -0.083 4.083 13 C 0.287 3.713 14 O -0.456 6.456 15 N -0.335 5.335 16 C -0.024 4.024 17 C -0.218 4.218 18 C 0.105 3.895 19 C -0.571 4.571 20 H 0.046 0.954 21 C -0.188 4.188 22 N -0.585 5.585 23 Si 0.770 3.230 24 H -0.203 1.203 25 H -0.199 1.199 26 H -0.163 1.163 27 C -0.073 4.073 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.251 0.749 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.240 0.760 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.145 0.855 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.034 0.966 50 H 0.077 0.923 51 H 0.124 0.876 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.700 -1.722 -11.230 26.282 hybrid contribution 1.145 -1.081 0.277 1.599 sum -22.555 -2.803 -10.953 25.230 Atomic orbital electron populations 1.21547 0.93898 1.02540 1.01764 1.21704 0.97909 0.91407 1.06784 1.21500 0.81756 0.92981 0.74271 1.90708 1.56473 1.48391 1.51303 1.45879 1.07382 1.08619 1.75453 1.21755 0.92279 0.84306 1.02978 1.22456 0.90971 0.94065 0.85127 1.86615 1.73982 1.33152 1.42664 1.23366 0.95262 1.01004 0.98349 1.22879 0.97421 0.86968 1.00295 1.63315 1.03205 1.19797 1.38546 1.22221 0.89257 1.03227 0.93629 1.21139 0.83786 0.76801 0.89584 1.90620 1.82403 1.50705 1.21855 1.48063 1.11607 1.63038 1.10829 1.21751 1.02825 0.97304 0.80485 1.22157 1.01796 0.94556 1.03290 1.19251 0.85641 0.95640 0.88974 1.21540 1.12385 1.00150 1.23045 0.95427 1.25839 0.95795 0.99029 0.98089 1.70041 1.20071 1.28780 1.39560 0.85724 0.77717 0.80350 0.79212 1.20298 1.19909 1.16282 1.22920 0.93002 0.94589 0.96816 0.89807 0.93761 0.93544 0.86142 0.86525 0.74890 0.90872 0.90993 0.75994 0.89321 0.87995 0.94872 0.92526 0.90907 0.85486 0.91010 0.89053 0.88735 0.91963 0.93468 0.93557 0.96615 0.92295 0.87564 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.20 71.98 0.66 -0.81 16 2 C -0.14 -1.00 6.42 29.85 0.19 -0.80 16 3 C 0.51 7.59 7.83 87.65 0.69 8.27 16 4 O -0.59 -14.82 15.98 -3.05 -0.05 -14.87 16 5 N -0.72 -7.55 5.13 -463.05 -2.37 -9.93 16 6 C 0.11 1.61 4.74 86.38 0.41 2.02 16 7 C 0.12 1.80 0.92 -9.61 -0.01 1.80 16 8 O -0.56 -8.33 13.11 -148.98 -1.95 -10.29 16 9 C -0.14 -2.54 5.71 31.98 0.18 -2.36 16 10 C 0.05 1.52 5.74 86.77 0.50 2.02 16 11 N -0.52 -14.74 4.86 -890.13 -4.33 -19.07 16 12 C 0.05 1.38 3.61 85.55 0.31 1.69 16 13 C 0.50 20.57 7.47 87.65 0.65 21.22 16 14 O -0.58 -29.48 14.62 -3.03 -0.04 -29.53 16 15 N -0.60 -24.76 2.46 -826.17 -2.03 -26.79 16 16 C 0.10 2.92 5.93 86.38 0.51 3.43 16 17 C -0.16 -3.55 10.24 71.98 0.74 -2.82 16 18 C 0.23 11.28 4.23 85.63 0.36 11.64 16 19 C -0.53 -31.71 9.94 25.60 0.25 -31.45 16 20 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 21 C 0.01 0.62 5.47 84.65 0.46 1.08 16 22 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 23 Si 0.95 45.12 27.47 68.60 1.88 47.01 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 27 C 0.05 1.06 6.22 86.64 0.54 1.60 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 30 H 0.05 0.63 8.10 -2.38 -0.02 0.61 16 31 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.41 1.71 7.29 -92.71 -0.68 1.03 16 34 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.39 2.73 8.06 -74.05 -0.60 2.13 16 37 H 0.09 1.61 8.05 -2.38 -0.02 1.59 16 38 H 0.10 1.30 8.03 -2.39 -0.02 1.28 16 39 H 0.03 1.05 7.62 -2.39 -0.02 1.03 16 40 H 0.06 2.10 7.38 -2.39 -0.02 2.08 16 41 H 0.07 1.98 7.11 -2.39 -0.02 1.97 16 42 H 0.13 2.87 7.08 -2.39 -0.02 2.85 16 43 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 44 H 0.09 2.21 6.44 -2.38 -0.02 2.20 16 45 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 47 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.05 2.12 7.13 -2.38 -0.02 2.11 16 49 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 50 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 51 H 0.11 1.85 7.79 -2.39 -0.02 1.83 16 52 H 0.08 1.45 7.48 -2.39 -0.02 1.43 16 Total: -1.00 -88.07 413.10 -2.55 -90.62 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.41 Total: 16.03 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 6.45 Total: 16.53 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -8.43 Total: -115.51 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -2.05 Total: -54.69 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Total: -88.07 -2.55 -90.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446719538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.024 kcal (2) G-P(sol) polarization free energy of solvation -88.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds