Wall clock time and date at job start Wed Apr 1 2020 00:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46927 * 2 1 4 4 C 1.42903 * 113.99938 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.30161 * 27.83172 * 4 3 2 6 6 C 1.54384 * 110.34713 * 265.54294 * 4 3 2 7 7 N 1.48146 * 104.61458 * 264.99503 * 6 4 3 8 8 C 1.34783 * 127.83708 * 140.41499 * 7 6 4 9 9 O 1.21281 * 120.00114 * 179.97438 * 8 7 6 10 10 C 1.50705 * 119.99997 * 359.97204 * 8 7 6 11 11 H 1.09005 * 109.46942 * 300.00553 * 10 8 7 12 12 C 1.53000 * 109.46738 * 59.99800 * 10 8 7 13 13 N 1.46491 * 109.47278 * 180.02562 * 10 8 7 14 14 C 1.34773 * 120.00162 * 155.00102 * 13 10 8 15 15 O 1.21280 * 120.00049 * 0.02562 * 14 13 10 16 16 C 1.50705 * 120.00155 * 179.97438 * 14 13 10 17 17 C 1.52993 * 109.47302 * 179.97438 * 16 14 13 18 18 C 1.48314 * 104.39638 * 320.47166 * 7 6 4 19 19 C 1.54289 * 110.33687 * 150.00196 * 4 3 2 20 20 H 1.08994 * 110.34579 * 359.90144 * 19 4 3 21 21 C 1.53005 * 110.34054 * 237.74106 * 19 4 3 22 22 N 1.46505 * 109.46904 * 176.47805 * 21 19 4 23 23 C 1.36931 * 119.99788 * 180.02562 * 22 21 19 24 24 H 1.08002 * 120.00438 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99680 * 179.72358 * 23 22 21 26 26 N 1.31617 * 119.99873 * 180.27450 * 25 23 22 27 27 Si 1.86800 * 120.00209 * 0.27770 * 25 23 22 28 28 H 1.48498 * 109.47118 * 89.99559 * 27 25 23 29 29 H 1.48499 * 109.47134 * 210.00079 * 27 25 23 30 30 H 1.48507 * 109.46904 * 329.99901 * 27 25 23 31 31 H 1.08990 * 109.47352 * 299.99956 * 1 2 3 32 32 H 1.09004 * 109.47307 * 59.99813 * 1 2 3 33 33 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47521 * 240.00470 * 2 1 3 35 35 H 1.09001 * 109.47155 * 119.99681 * 2 1 3 36 36 H 1.08996 * 110.40846 * 23.77891 * 6 4 3 37 37 H 1.08995 * 110.40827 * 146.21332 * 6 4 3 38 38 H 1.08994 * 109.47804 * 300.00303 * 12 10 8 39 39 H 1.09005 * 109.46789 * 60.00659 * 12 10 8 40 40 H 1.09005 * 109.46878 * 180.02562 * 12 10 8 41 41 H 0.97007 * 120.00121 * 334.99926 * 13 10 8 42 42 H 1.08999 * 109.46814 * 300.00214 * 16 14 13 43 43 H 1.09001 * 109.46703 * 59.99901 * 16 14 13 44 44 H 1.09009 * 109.47055 * 60.00025 * 17 16 14 45 45 H 1.09001 * 109.47579 * 179.97438 * 17 16 14 46 46 H 1.08998 * 109.47338 * 300.00461 * 17 16 14 47 47 H 1.08997 * 110.38351 * 280.73883 * 18 7 6 48 48 H 1.08999 * 110.50753 * 158.24825 * 18 7 6 49 49 H 1.09003 * 109.46946 * 56.48564 * 21 19 4 50 50 H 1.08993 * 109.47679 * 296.48106 * 21 19 4 51 51 H 0.97000 * 119.99792 * 0.02562 * 22 21 19 52 52 H 0.97000 * 120.00553 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8795 0.5887 -0.4764 6 6 3.9565 1.6149 1.4439 7 7 4.0885 3.0776 1.6388 8 6 3.7940 3.7946 2.7414 9 8 3.9587 4.9962 2.7453 10 6 3.2600 3.1034 3.9695 11 1 2.3246 2.5998 3.7251 12 6 4.2804 2.0740 4.4595 13 7 3.0205 4.0937 5.0221 14 6 2.1132 3.8452 5.9872 15 8 1.4954 2.8016 5.9847 16 6 1.8672 4.8637 7.0704 17 6 0.7983 4.3388 8.0309 18 6 4.6169 3.5757 0.3457 19 6 3.8667 2.7514 -0.7227 20 1 2.9944 3.2986 -1.0799 21 6 4.7992 2.4187 -1.8893 22 7 5.1338 3.6478 -2.6129 23 6 5.9605 3.5969 -3.7033 24 1 6.3657 2.6506 -4.0301 25 6 6.2729 4.7607 -4.3924 26 7 7.0632 4.7110 -5.4437 27 14 5.5716 6.3974 -3.8276 28 1 6.4987 7.0224 -2.8503 29 1 5.4072 7.2959 -4.9985 30 1 4.2514 6.1749 -3.1851 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2424 1.1997 2.1550 37 1 4.9261 1.1284 1.5495 38 1 4.4582 1.3372 3.6763 39 1 5.2157 2.5776 4.7039 40 1 3.8939 1.5737 5.3475 41 1 3.5149 4.9283 5.0244 42 1 2.7925 5.0421 7.6183 43 1 1.5254 5.7963 6.6213 44 1 1.1398 3.4061 8.4800 45 1 0.6207 5.0753 8.8146 46 1 -0.1268 4.1607 7.4827 47 1 5.6900 3.3964 0.2797 48 1 4.4000 4.6374 0.2280 49 1 4.3017 1.7232 -2.5652 50 1 5.7121 1.9627 -1.5061 51 1 4.7696 4.4977 -2.3196 52 1 7.2819 5.5243 -5.9250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479537583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:03 Heat of formation + Delta-G solvation = -103.993260 kcal Electronic energy + Delta-G solvation = -31013.107905 eV Core-core repulsion = 26820.210249 eV Total energy + Delta-G solvation = -4192.897656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81099 -39.83557 -38.62253 -36.73598 -35.30701 -34.90869 -33.23949 -32.45508 -31.43287 -30.99321 -29.80709 -28.49423 -26.21609 -25.37616 -24.18896 -23.13084 -22.74343 -21.70577 -20.60778 -20.24757 -19.70165 -18.03170 -17.56983 -17.23981 -16.70236 -16.42110 -16.14045 -15.92118 -15.45419 -15.07240 -14.76779 -14.52235 -14.38348 -14.24758 -13.86435 -13.71925 -13.48585 -13.17370 -12.97133 -12.82130 -12.69626 -12.61482 -12.53038 -12.39721 -12.09973 -12.07810 -12.00538 -11.89525 -11.69444 -11.50665 -11.36882 -11.20160 -10.86913 -10.81761 -10.61015 -10.18694 -10.15305 -10.03233 -9.76769 -9.61491 -9.45107 -8.95082 -8.80444 -7.29139 -5.80065 -3.16698 2.28597 2.40053 2.49360 3.05403 3.37968 3.41518 3.45225 3.47337 4.04929 4.36616 4.39182 4.57083 4.59282 4.68085 4.72144 4.76548 4.78513 4.87431 4.91407 5.02966 5.14603 5.16378 5.18982 5.22407 5.25825 5.29153 5.40568 5.46563 5.47570 5.51717 5.58412 5.59602 5.60024 5.70001 5.74942 5.75891 5.86289 5.95264 5.96557 6.00569 6.06476 6.15411 6.50080 6.57573 7.13807 7.18317 7.33655 7.86537 7.93499 7.94100 8.38294 9.16397 9.88953 10.07609 11.37942 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.002838 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.634768 B = 9864.641330 C =11456.342643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.082 3.918 5 H 0.087 0.913 6 C 0.076 3.924 7 N -0.611 5.611 8 C 0.533 3.467 9 O -0.538 6.538 10 C 0.129 3.871 11 H 0.113 0.887 12 C -0.163 4.163 13 N -0.715 5.715 14 C 0.515 3.485 15 O -0.542 6.542 16 C -0.144 4.144 17 C -0.137 4.137 18 C 0.114 3.886 19 C -0.111 4.111 20 H 0.095 0.905 21 C 0.169 3.831 22 N -0.755 5.755 23 C -0.247 4.247 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.932 5.932 27 Si 0.882 3.118 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.276 1.276 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.411 0.589 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.033 0.967 50 H 0.032 0.968 51 H 0.362 0.638 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 -8.181 24.628 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.292 6.292 4 C 0.023 3.977 5 H 0.105 0.895 6 C -0.048 4.048 7 N -0.345 5.345 8 C 0.321 3.679 9 O -0.415 6.415 10 C 0.021 3.979 11 H 0.131 0.869 12 C -0.222 4.222 13 N -0.369 5.369 14 C 0.302 3.698 15 O -0.419 6.419 16 C -0.184 4.184 17 C -0.194 4.194 18 C -0.008 4.008 19 C -0.130 4.130 20 H 0.114 0.886 21 C 0.042 3.958 22 N -0.401 5.401 23 C -0.377 4.377 24 H 0.109 0.891 25 C -0.189 4.189 26 N -0.580 5.580 27 Si 0.712 3.288 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.202 1.202 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.247 0.753 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.051 0.949 50 H 0.050 0.950 51 H 0.195 0.805 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.919 -8.147 24.536 28.065 hybrid contribution 0.001 1.383 0.103 1.387 sum -10.918 -6.765 24.640 27.786 Atomic orbital electron populations 1.21737 0.93831 1.02128 1.03195 1.22551 0.95658 0.83975 1.00105 1.88023 1.20223 1.26270 1.94733 1.23049 0.81713 0.99124 0.93854 0.89467 1.23123 1.01754 0.81664 0.98235 1.48846 1.63999 1.08483 1.13170 1.20105 0.77625 0.86898 0.83322 1.90715 1.54022 1.14066 1.82736 1.20657 1.01091 0.90049 0.86130 0.86887 1.22240 0.98619 0.98393 1.02916 1.45835 1.42521 1.22014 1.26497 1.20835 0.78246 0.88217 0.82479 1.90698 1.48540 1.27045 1.75646 1.21629 1.02060 0.98544 0.96129 1.21530 0.98353 1.01262 0.98279 1.22555 0.98423 1.00044 0.79776 1.22510 0.99971 0.94937 0.95628 0.88623 1.20663 0.94666 0.90281 0.90220 1.42692 1.58951 1.03813 1.34598 1.19011 1.20171 0.95785 1.02688 0.89145 1.24667 0.99494 0.97391 0.97375 1.69696 1.39906 1.27637 1.20751 0.86584 0.79076 0.85189 0.77919 1.20919 1.21660 1.20247 0.91997 0.91735 0.91191 0.92963 0.93495 0.89456 0.89466 0.90567 0.91669 0.90798 0.75262 0.88751 0.88661 0.91978 0.91999 0.91931 0.89622 0.89575 0.94945 0.95020 0.80522 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.50 6.50 37.16 0.24 0.74 16 3 O -0.37 -4.61 9.95 -35.23 -0.35 -4.96 16 4 C 0.08 0.93 3.20 -25.33 -0.08 0.85 16 5 H 0.09 0.85 7.38 -51.93 -0.38 0.47 16 6 C 0.08 0.74 5.00 -2.41 -0.01 0.72 16 7 N -0.61 -7.76 3.31 -169.17 -0.56 -8.32 16 8 C 0.53 7.15 7.33 -10.98 -0.08 7.07 16 9 O -0.54 -8.92 16.11 5.56 0.09 -8.83 16 10 C 0.13 1.39 2.32 -69.08 -0.16 1.23 16 11 H 0.11 1.31 7.39 -51.93 -0.38 0.93 16 12 C -0.16 -1.39 9.24 37.16 0.34 -1.05 16 13 N -0.71 -7.18 4.95 -54.93 -0.27 -7.45 16 14 C 0.52 5.27 7.79 -10.98 -0.09 5.18 16 15 O -0.54 -7.30 15.64 5.56 0.09 -7.21 16 16 C -0.14 -0.96 6.42 -27.88 -0.18 -1.14 16 17 C -0.14 -0.94 9.20 37.15 0.34 -0.60 16 18 C 0.11 1.67 6.34 -2.31 -0.01 1.66 16 19 C -0.11 -1.62 2.92 -89.21 -0.26 -1.88 16 20 H 0.10 1.58 7.98 -51.93 -0.41 1.16 16 21 C 0.17 2.99 5.37 -4.04 -0.02 2.97 16 22 N -0.75 -17.31 5.26 -59.90 -0.32 -17.62 16 23 C -0.25 -6.84 10.47 -15.06 -0.16 -6.99 16 24 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 25 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 27 Si 0.88 22.20 27.74 -169.99 -4.72 17.48 16 28 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.28 -6.61 6.51 56.52 0.37 -6.24 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.74 6.50 -51.93 -0.34 0.40 16 37 H 0.09 0.67 8.01 -51.93 -0.42 0.26 16 38 H 0.08 0.55 5.34 -51.93 -0.28 0.27 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.41 3.81 7.79 -40.82 -0.32 3.49 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.47 8.10 -51.92 -0.42 0.05 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 47 H 0.09 1.26 7.78 -51.93 -0.40 0.85 16 48 H 0.09 1.44 7.89 -51.93 -0.41 1.03 16 49 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.03 0.54 8.02 -51.93 -0.42 0.13 16 51 H 0.36 8.27 5.42 -40.82 -0.22 8.05 16 52 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 417.13 15.07 6.29 6.29 Total: -1.00 -35.36 417.13 -7.88 -43.24 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -9.06 Total: 7.72 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 0.16 Total: 7.95 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.37 Total: -61.67 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.17 Total: -21.00 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.72 Total: 17.48 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.36 -7.88 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479537583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.756 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds