Wall clock time and date at job start Wed Apr 1 2020 00:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46927 * 2 1 4 4 C 1.42903 * 113.99938 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.30161 * 27.83172 * 4 3 2 6 6 C 1.54384 * 110.34713 * 265.54294 * 4 3 2 7 7 N 1.48146 * 104.61458 * 264.99503 * 6 4 3 8 8 C 1.34783 * 127.83708 * 140.41499 * 7 6 4 9 9 O 1.21281 * 120.00114 * 179.97438 * 8 7 6 10 10 C 1.50705 * 119.99997 * 359.97204 * 8 7 6 11 11 H 1.09005 * 109.46942 * 300.00553 * 10 8 7 12 12 C 1.53000 * 109.46738 * 59.99800 * 10 8 7 13 13 N 1.46491 * 109.47278 * 180.02562 * 10 8 7 14 14 C 1.34773 * 120.00162 * 155.00102 * 13 10 8 15 15 O 1.21280 * 120.00049 * 0.02562 * 14 13 10 16 16 C 1.50705 * 120.00155 * 179.97438 * 14 13 10 17 17 C 1.52993 * 109.47302 * 179.97438 * 16 14 13 18 18 C 1.48314 * 104.39638 * 320.47166 * 7 6 4 19 19 C 1.54289 * 110.33687 * 150.00196 * 4 3 2 20 20 H 1.08994 * 110.34579 * 359.90144 * 19 4 3 21 21 C 1.53005 * 110.34054 * 237.74106 * 19 4 3 22 22 N 1.46505 * 109.46904 * 176.47805 * 21 19 4 23 23 C 1.36931 * 119.99788 * 180.02562 * 22 21 19 24 24 H 1.08002 * 120.00438 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99680 * 179.72358 * 23 22 21 26 26 N 1.31617 * 119.99873 * 180.27450 * 25 23 22 27 27 Si 1.86800 * 120.00209 * 0.27770 * 25 23 22 28 28 H 1.48498 * 109.47118 * 89.99559 * 27 25 23 29 29 H 1.48499 * 109.47134 * 210.00079 * 27 25 23 30 30 H 1.48507 * 109.46904 * 329.99901 * 27 25 23 31 31 H 1.08990 * 109.47352 * 299.99956 * 1 2 3 32 32 H 1.09004 * 109.47307 * 59.99813 * 1 2 3 33 33 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47521 * 240.00470 * 2 1 3 35 35 H 1.09001 * 109.47155 * 119.99681 * 2 1 3 36 36 H 1.08996 * 110.40846 * 23.77891 * 6 4 3 37 37 H 1.08995 * 110.40827 * 146.21332 * 6 4 3 38 38 H 1.08994 * 109.47804 * 300.00303 * 12 10 8 39 39 H 1.09005 * 109.46789 * 60.00659 * 12 10 8 40 40 H 1.09005 * 109.46878 * 180.02562 * 12 10 8 41 41 H 0.97007 * 120.00121 * 334.99926 * 13 10 8 42 42 H 1.08999 * 109.46814 * 300.00214 * 16 14 13 43 43 H 1.09001 * 109.46703 * 59.99901 * 16 14 13 44 44 H 1.09009 * 109.47055 * 60.00025 * 17 16 14 45 45 H 1.09001 * 109.47579 * 179.97438 * 17 16 14 46 46 H 1.08998 * 109.47338 * 300.00461 * 17 16 14 47 47 H 1.08997 * 110.38351 * 280.73883 * 18 7 6 48 48 H 1.08999 * 110.50753 * 158.24825 * 18 7 6 49 49 H 1.09003 * 109.46946 * 56.48564 * 21 19 4 50 50 H 1.08993 * 109.47679 * 296.48106 * 21 19 4 51 51 H 0.97000 * 119.99792 * 0.02562 * 22 21 19 52 52 H 0.97000 * 120.00553 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8795 0.5887 -0.4764 6 6 3.9565 1.6149 1.4439 7 7 4.0885 3.0776 1.6388 8 6 3.7940 3.7946 2.7414 9 8 3.9587 4.9962 2.7453 10 6 3.2600 3.1034 3.9695 11 1 2.3246 2.5998 3.7251 12 6 4.2804 2.0740 4.4595 13 7 3.0205 4.0937 5.0221 14 6 2.1132 3.8452 5.9872 15 8 1.4954 2.8016 5.9847 16 6 1.8672 4.8637 7.0704 17 6 0.7983 4.3388 8.0309 18 6 4.6169 3.5757 0.3457 19 6 3.8667 2.7514 -0.7227 20 1 2.9944 3.2986 -1.0799 21 6 4.7992 2.4187 -1.8893 22 7 5.1338 3.6478 -2.6129 23 6 5.9605 3.5969 -3.7033 24 1 6.3657 2.6506 -4.0301 25 6 6.2729 4.7607 -4.3924 26 7 7.0632 4.7110 -5.4437 27 14 5.5716 6.3974 -3.8276 28 1 6.4987 7.0224 -2.8503 29 1 5.4072 7.2959 -4.9985 30 1 4.2514 6.1749 -3.1851 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2424 1.1997 2.1550 37 1 4.9261 1.1284 1.5495 38 1 4.4582 1.3372 3.6763 39 1 5.2157 2.5776 4.7039 40 1 3.8939 1.5737 5.3475 41 1 3.5149 4.9283 5.0244 42 1 2.7925 5.0421 7.6183 43 1 1.5254 5.7963 6.6213 44 1 1.1398 3.4061 8.4800 45 1 0.6207 5.0753 8.8146 46 1 -0.1268 4.1607 7.4827 47 1 5.6900 3.3964 0.2797 48 1 4.4000 4.6374 0.2280 49 1 4.3017 1.7232 -2.5652 50 1 5.7121 1.9627 -1.5061 51 1 4.7696 4.4977 -2.3196 52 1 7.2819 5.5243 -5.9250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479537583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:02 Heat of formation + Delta-G solvation = -130.353941 kcal Electronic energy + Delta-G solvation = -31014.250989 eV Core-core repulsion = 26820.210249 eV Total energy + Delta-G solvation = -4194.040741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76975 -40.72268 -39.61118 -37.79077 -36.55035 -36.16720 -34.14923 -33.78080 -32.68436 -31.90806 -30.99899 -29.47651 -27.48394 -26.28147 -25.34754 -23.94168 -23.85686 -23.02861 -21.51757 -21.34312 -20.66757 -19.63986 -18.77034 -18.17360 -17.66172 -17.37364 -17.02200 -16.65885 -16.55455 -16.32391 -15.97059 -15.80661 -15.62295 -15.19094 -15.00794 -14.73573 -14.70880 -14.34347 -14.12032 -13.87601 -13.64609 -13.54545 -13.45567 -13.30414 -13.12080 -13.02601 -12.94900 -12.79211 -12.68172 -12.64033 -12.34988 -12.28941 -12.11868 -12.03790 -11.99182 -11.82311 -11.66341 -11.11996 -11.00736 -10.96092 -10.62441 -10.29177 -9.82429 -9.31273 -8.03865 -5.36705 1.34411 1.37274 1.37996 1.44638 1.47948 1.64075 2.24240 2.46034 2.61211 3.12399 3.28286 3.41319 3.50012 3.73601 3.85946 3.92478 3.95611 4.01509 4.08008 4.21052 4.22824 4.26231 4.26624 4.35060 4.47760 4.49027 4.55755 4.58378 4.61478 4.67546 4.73659 4.75888 4.80034 4.89269 4.99379 5.01274 5.05380 5.05714 5.07507 5.10698 5.22028 5.23873 5.30233 5.37554 5.75429 6.19994 6.32160 6.34207 6.42660 6.85376 7.06273 7.14536 7.82570 7.99208 9.17315 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.002838 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.634768 B = 9864.641330 C =11456.342643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.086 3.914 5 H 0.110 0.890 6 C 0.076 3.924 7 N -0.610 5.610 8 C 0.529 3.471 9 O -0.576 6.576 10 C 0.135 3.865 11 H 0.106 0.894 12 C -0.155 4.155 13 N -0.714 5.714 14 C 0.511 3.489 15 O -0.579 6.579 16 C -0.139 4.139 17 C -0.136 4.136 18 C 0.116 3.884 19 C -0.101 4.101 20 H 0.074 0.926 21 C 0.169 3.831 22 N -0.760 5.760 23 C -0.228 4.228 24 H 0.065 0.935 25 C -0.060 4.060 26 N -0.980 5.980 27 Si 0.945 3.055 28 H -0.279 1.279 29 H -0.296 1.296 30 H -0.259 1.259 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.415 0.585 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.088 0.912 48 H 0.060 0.940 49 H 0.033 0.967 50 H 0.047 0.953 51 H 0.363 0.637 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.159 -9.133 27.139 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.318 6.318 4 C 0.027 3.973 5 H 0.127 0.873 6 C -0.046 4.046 7 N -0.343 5.343 8 C 0.318 3.682 9 O -0.456 6.456 10 C 0.026 3.974 11 H 0.124 0.876 12 C -0.213 4.213 13 N -0.367 5.367 14 C 0.300 3.700 15 O -0.458 6.458 16 C -0.179 4.179 17 C -0.193 4.193 18 C -0.007 4.007 19 C -0.121 4.121 20 H 0.093 0.907 21 C 0.043 3.957 22 N -0.405 5.405 23 C -0.359 4.359 24 H 0.083 0.917 25 C -0.252 4.252 26 N -0.631 5.631 27 Si 0.774 3.226 28 H -0.205 1.205 29 H -0.223 1.223 30 H -0.184 1.184 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.252 0.748 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.051 0.949 50 H 0.065 0.935 51 H 0.196 0.804 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.539 -9.146 27.089 30.832 hybrid contribution 0.151 1.563 -0.692 1.716 sum -11.387 -7.583 26.398 29.732 Atomic orbital electron populations 1.21765 0.93690 1.03266 1.02149 1.22772 0.95851 0.82754 1.01526 1.87998 1.20532 1.28361 1.94924 1.23021 0.81848 0.97872 0.94535 0.87254 1.23390 1.03854 0.79850 0.97458 1.48890 1.63317 1.09864 1.12202 1.20605 0.77010 0.86556 0.84021 1.90691 1.55686 1.15777 1.83489 1.20634 1.01156 0.90319 0.85256 0.87607 1.22203 0.97829 0.97943 1.03356 1.45909 1.42520 1.22107 1.26213 1.21486 0.77354 0.88346 0.82797 1.90679 1.49820 1.28747 1.76587 1.21707 1.03226 0.97798 0.95136 1.21533 0.97574 1.01557 0.98683 1.22376 0.98583 0.98667 0.81081 1.22279 0.98352 0.96776 0.94709 0.90743 1.20827 0.95891 0.88202 0.90819 1.42761 1.58170 1.05792 1.33826 1.19035 1.19208 0.94561 1.03114 0.91661 1.25402 1.00733 1.01069 0.97964 1.69854 1.42268 1.28381 1.22617 0.85551 0.79143 0.80713 0.77233 1.20521 1.22253 1.18401 0.92686 0.93124 0.88984 0.92332 0.91171 0.87633 0.86382 0.88864 0.91409 0.90808 0.74773 0.86246 0.87187 0.92980 0.89709 0.93599 0.89404 0.92143 0.94865 0.93510 0.80436 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.05 0.74 6.50 71.98 0.47 1.21 16 3 O -0.40 -9.02 9.95 -148.98 -1.48 -10.50 16 4 C 0.09 1.74 3.20 31.50 0.10 1.84 16 5 H 0.11 1.73 7.38 -2.38 -0.02 1.72 16 6 C 0.08 1.23 5.00 86.53 0.43 1.66 16 7 N -0.61 -14.42 3.31 -807.52 -2.67 -17.09 16 8 C 0.53 13.60 7.33 87.66 0.64 14.24 16 9 O -0.58 -18.95 16.11 -3.03 -0.05 -19.00 16 10 C 0.14 2.70 2.32 44.25 0.10 2.80 16 11 H 0.11 2.31 7.39 -2.38 -0.02 2.29 16 12 C -0.16 -2.26 9.24 71.98 0.66 -1.59 16 13 N -0.71 -13.46 4.95 -446.10 -2.21 -15.67 16 14 C 0.51 9.84 7.79 87.66 0.68 10.52 16 15 O -0.58 -15.18 15.64 -3.03 -0.05 -15.23 16 16 C -0.14 -1.58 6.42 29.85 0.19 -1.39 16 17 C -0.14 -1.67 9.20 71.98 0.66 -1.01 16 18 C 0.12 3.28 6.34 86.50 0.55 3.83 16 19 C -0.10 -2.84 2.92 -9.88 -0.03 -2.87 16 20 H 0.07 2.43 7.98 -2.39 -0.02 2.41 16 21 C 0.17 5.74 5.37 86.38 0.46 6.20 16 22 N -0.76 -34.39 5.26 -343.44 -1.81 -36.20 16 23 C -0.23 -12.71 10.47 84.04 0.88 -11.83 16 24 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 25 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 26 N -0.98 -62.49 13.97 21.65 0.30 -62.18 16 27 Si 0.95 46.31 27.74 68.60 1.90 48.21 16 28 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 29 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 30 H -0.26 -11.76 6.51 99.48 0.65 -11.11 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.85 8.10 -2.39 -0.02 0.84 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 1.38 6.50 -2.39 -0.02 1.36 16 37 H 0.12 1.26 8.01 -2.39 -0.02 1.24 16 38 H 0.09 1.01 5.34 -2.39 -0.01 1.00 16 39 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.41 7.21 7.79 -92.70 -0.72 6.49 16 42 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 47 H 0.09 2.45 7.78 -2.39 -0.02 2.43 16 48 H 0.06 2.02 7.89 -2.39 -0.02 2.01 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.05 1.49 8.02 -2.39 -0.02 1.47 16 51 H 0.36 16.29 5.42 -92.71 -0.50 15.79 16 52 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -78.74 417.13 0.59 -78.15 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.37 Total: 30.53 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 7.02 Total: 18.98 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -6.39 Total: -131.14 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.58 Total: -44.73 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -78.74 0.59 -78.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479537583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.204 kcal (2) G-P(sol) polarization free energy of solvation -78.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds