Wall clock time and date at job start Wed Apr 1 2020 00:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47319 * 2 1 4 4 C 1.42896 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.91563 * 26.09063 * 4 3 2 6 6 C 1.55121 * 111.16296 * 262.16894 * 4 3 2 7 7 N 1.47425 * 104.94720 * 205.12802 * 6 4 3 8 8 C 1.34772 * 125.65123 * 203.96470 * 7 6 4 9 9 O 1.21285 * 119.99862 * 180.02562 * 8 7 6 10 10 C 1.50695 * 120.00091 * 0.04404 * 8 7 6 11 11 H 1.09006 * 109.47163 * 60.00000 * 10 8 7 12 12 C 1.52994 * 109.47421 * 299.99786 * 10 8 7 13 13 N 1.46500 * 109.47125 * 179.97438 * 10 8 7 14 14 C 1.34785 * 119.99977 * 204.99979 * 13 10 8 15 15 O 1.21279 * 119.99652 * 0.02562 * 14 13 10 16 16 C 1.50692 * 119.99666 * 180.02562 * 14 13 10 17 17 C 1.53004 * 109.47241 * 179.97438 * 16 14 13 18 18 C 1.47025 * 108.69834 * 24.00105 * 7 6 4 19 19 C 1.54322 * 107.27238 * 358.94200 * 18 7 6 20 20 H 1.09012 * 110.71855 * 96.34581 * 19 18 7 21 21 C 1.53001 * 110.72148 * 219.43771 * 19 18 7 22 22 N 1.46496 * 109.47205 * 291.16242 * 21 19 18 23 23 C 1.36945 * 119.99718 * 179.97438 * 22 21 19 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 21 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 21 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 H 1.08999 * 109.46808 * 59.99455 * 1 2 3 32 32 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46849 * 300.00160 * 1 2 3 34 34 H 1.08995 * 109.47013 * 239.99815 * 2 1 3 35 35 H 1.08997 * 109.46968 * 119.99782 * 2 1 3 36 36 H 1.09005 * 110.42314 * 86.19639 * 6 4 3 37 37 H 1.09003 * 110.21205 * 323.95085 * 6 4 3 38 38 H 1.08996 * 109.47351 * 179.97438 * 12 10 8 39 39 H 1.09006 * 109.47126 * 300.00236 * 12 10 8 40 40 H 1.09004 * 109.47223 * 59.99795 * 12 10 8 41 41 H 0.97003 * 120.00072 * 25.00042 * 13 10 8 42 42 H 1.09000 * 109.47822 * 299.99783 * 16 14 13 43 43 H 1.09004 * 109.47335 * 60.00099 * 16 14 13 44 44 H 1.09005 * 109.47025 * 300.00808 * 17 16 14 45 45 H 1.09004 * 109.46805 * 59.99860 * 17 16 14 46 46 H 1.08995 * 109.47506 * 180.02562 * 17 16 14 47 47 H 1.08998 * 109.88524 * 239.51957 * 18 7 6 48 48 H 1.09003 * 110.00608 * 118.43018 * 18 7 6 49 49 H 1.08997 * 109.46922 * 171.15284 * 21 19 18 50 50 H 1.09000 * 109.46483 * 51.16103 * 21 19 18 51 51 H 0.96996 * 120.00499 * 359.97438 * 22 21 19 52 52 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8909 0.5793 -0.4487 6 6 3.9742 1.7006 1.4323 7 7 5.2637 2.3887 1.2396 8 6 6.2877 2.3982 2.1157 9 8 7.3065 3.0009 1.8513 10 6 6.1671 1.6596 3.4237 11 1 5.9972 0.6006 3.2287 12 6 4.9918 2.2260 4.2228 13 7 7.4039 1.8218 4.1920 14 6 7.7520 0.8997 5.1113 15 8 7.0416 -0.0645 5.3022 16 6 9.0239 1.0669 5.9020 17 6 9.1815 -0.1081 6.8692 18 6 5.2472 3.0636 -0.0665 19 6 3.8861 2.7545 -0.7248 20 1 3.1788 3.5648 -0.5472 21 6 4.0545 2.5049 -2.2249 22 7 4.4246 3.7568 -2.8897 23 6 4.6306 3.7782 -4.2434 24 1 4.5206 2.8721 -4.8207 25 6 4.9807 4.9644 -4.8735 26 7 5.1153 6.0686 -4.1698 27 14 5.2625 4.9935 -6.7199 28 1 5.6224 6.3703 -7.1441 29 1 6.3669 4.0634 -7.0668 30 1 4.0214 4.5700 -7.4167 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 4.1240 0.7512 1.9467 37 1 3.2871 2.3331 1.9944 38 1 4.9043 1.6915 5.1687 39 1 5.1617 3.2850 4.4178 40 1 4.0717 2.1050 3.6510 41 1 7.9723 2.5928 4.0391 42 1 9.8745 1.0937 5.2208 43 1 8.9811 1.9984 6.4664 44 1 8.3309 -0.1345 7.5504 45 1 9.2241 -1.0398 6.3051 46 1 10.1012 0.0130 7.4414 47 1 6.0558 2.6833 -0.6907 48 1 5.3579 4.1396 0.0683 49 1 3.1161 2.1368 -2.6396 50 1 4.8376 1.7636 -2.3841 51 1 4.5237 4.5705 -2.3712 52 1 5.3603 6.8974 -4.6100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479537587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:07 Heat of formation + Delta-G solvation = -108.542404 kcal Electronic energy + Delta-G solvation = -30663.597470 eV Core-core repulsion = 26470.502548 eV Total energy + Delta-G solvation = -4193.094921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80337 -39.77835 -38.57567 -36.72056 -35.28384 -34.75968 -33.21502 -32.45676 -31.37245 -30.88372 -29.49531 -28.36942 -26.00952 -25.28926 -24.04309 -23.05993 -22.77786 -21.87207 -20.57300 -20.27762 -19.59362 -17.96237 -17.28643 -17.12112 -16.82907 -16.22199 -15.92783 -15.75987 -15.46093 -15.21927 -14.76327 -14.49723 -14.32624 -13.91450 -13.82755 -13.52750 -13.43545 -13.31970 -13.06339 -12.87390 -12.71800 -12.59843 -12.50436 -12.27462 -12.19269 -12.06724 -11.92829 -11.69593 -11.49252 -11.47417 -11.19687 -11.06776 -10.75685 -10.74488 -10.47825 -10.17046 -10.14320 -10.00616 -9.78111 -9.51248 -9.42159 -8.88776 -8.72189 -6.94478 -5.76576 -3.06125 2.31477 2.42025 2.52301 3.04110 3.44593 3.48630 3.49897 3.56705 4.14232 4.35348 4.42212 4.54561 4.70208 4.71670 4.74252 4.79455 4.82451 4.90255 4.93580 5.06390 5.15233 5.19379 5.22761 5.27919 5.32896 5.40626 5.44352 5.49250 5.56258 5.60600 5.62723 5.67096 5.78200 5.81768 5.86410 5.88460 5.99587 6.01294 6.05452 6.17639 6.24455 6.28133 6.66645 6.71646 7.14956 7.21064 7.33497 7.68817 7.90118 7.96746 8.41499 9.52892 10.08491 10.43259 11.46027 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.002635 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.176512 B =10622.093619 C =12841.624426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.365 6.365 4 C 0.084 3.916 5 H 0.082 0.918 6 C 0.076 3.924 7 N -0.608 5.608 8 C 0.524 3.476 9 O -0.532 6.532 10 C 0.129 3.871 11 H 0.112 0.888 12 C -0.166 4.166 13 N -0.714 5.714 14 C 0.515 3.485 15 O -0.543 6.543 16 C -0.144 4.144 17 C -0.136 4.136 18 C 0.118 3.882 19 C -0.100 4.100 20 H 0.098 0.902 21 C 0.166 3.834 22 N -0.731 5.731 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.908 3.092 28 H -0.291 1.291 29 H -0.286 1.286 30 H -0.286 1.286 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.411 0.589 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.028 0.972 50 H 0.020 0.980 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -12.607 21.413 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.283 6.283 4 C 0.024 3.976 5 H 0.100 0.900 6 C -0.048 4.048 7 N -0.343 5.343 8 C 0.312 3.688 9 O -0.409 6.409 10 C 0.021 3.979 11 H 0.130 0.870 12 C -0.224 4.224 13 N -0.369 5.369 14 C 0.303 3.697 15 O -0.421 6.421 16 C -0.184 4.184 17 C -0.194 4.194 18 C -0.004 4.004 19 C -0.120 4.120 20 H 0.116 0.884 21 C 0.038 3.962 22 N -0.376 5.376 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.213 1.213 30 H -0.213 1.213 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.248 0.752 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.046 0.954 50 H 0.038 0.962 51 H 0.218 0.782 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.914 -12.848 21.270 24.866 hybrid contribution 0.560 0.548 -1.040 1.302 sum -0.354 -12.300 20.230 23.678 Atomic orbital electron populations 1.21740 0.93684 1.02118 1.03323 1.22566 0.95721 0.83842 1.00137 1.87973 1.19446 1.26316 1.94587 1.23237 0.81667 0.99209 0.93450 0.89972 1.22954 0.85398 0.97526 0.98872 1.48270 1.14754 1.51906 1.19326 1.20168 0.82421 0.81439 0.84814 1.90734 1.28667 1.44361 1.77101 1.20672 0.86363 1.01630 0.89272 0.87041 1.22264 0.97032 1.01951 1.01182 1.45849 1.24396 1.27352 1.39255 1.20833 0.87533 0.81760 0.79620 1.90694 1.53947 1.30585 1.66828 1.21630 0.95616 1.01886 0.99252 1.21531 1.01844 0.97353 0.98688 1.22114 0.98095 0.98304 0.81850 1.22578 0.95538 0.97017 0.96847 0.88403 1.20622 0.97492 0.90698 0.87421 1.42317 1.83718 1.05839 1.05687 1.19147 1.39531 0.94665 0.83930 0.91232 1.24745 1.02459 0.95655 0.97985 1.69648 1.54436 0.99302 1.34647 0.86258 0.77960 0.76558 0.85338 1.21678 1.21266 1.21263 0.91556 0.91241 0.91918 0.93004 0.93481 0.90368 0.89700 0.90819 0.91644 0.90305 0.75196 0.88623 0.88736 0.91989 0.91952 0.92003 0.90089 0.90344 0.95411 0.96225 0.78180 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.88 16 2 C 0.05 0.51 6.49 37.16 0.24 0.75 16 3 O -0.37 -4.53 10.16 -35.23 -0.36 -4.89 16 4 C 0.08 1.03 3.00 -24.47 -0.07 0.95 16 5 H 0.08 0.95 7.74 -51.93 -0.40 0.55 16 6 C 0.08 0.80 4.88 -2.41 -0.01 0.79 16 7 N -0.61 -8.00 3.32 -170.38 -0.57 -8.57 16 8 C 0.52 7.15 7.28 -10.99 -0.08 7.07 16 9 O -0.53 -9.04 16.16 5.55 0.09 -8.95 16 10 C 0.13 1.40 2.33 -69.09 -0.16 1.23 16 11 H 0.11 1.23 7.28 -51.93 -0.38 0.85 16 12 C -0.17 -1.49 9.29 37.15 0.35 -1.15 16 13 N -0.71 -7.24 4.95 -54.94 -0.27 -7.52 16 14 C 0.52 5.28 7.79 -10.99 -0.09 5.20 16 15 O -0.54 -7.29 15.64 5.56 0.09 -7.20 16 16 C -0.14 -0.98 6.42 -27.88 -0.18 -1.15 16 17 C -0.14 -0.95 9.20 37.16 0.34 -0.60 16 18 C 0.12 1.87 6.27 -3.06 -0.02 1.85 16 19 C -0.10 -1.56 2.71 -88.79 -0.24 -1.80 16 20 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 21 C 0.17 3.22 5.59 -4.04 -0.02 3.20 16 22 N -0.73 -18.22 5.48 -59.91 -0.33 -18.55 16 23 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 27 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.66 7.36 -51.93 -0.38 0.28 16 37 H 0.08 0.84 7.07 -51.93 -0.37 0.47 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.63 4.99 -51.93 -0.26 0.37 16 41 H 0.41 3.89 7.79 -40.82 -0.32 3.58 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.48 8.10 -51.93 -0.42 0.05 16 45 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 1.45 7.73 -51.93 -0.40 1.05 16 48 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 51 H 0.38 10.07 7.60 -40.82 -0.31 9.76 16 52 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 420.42 15.07 6.34 6.34 Total: -1.00 -34.29 420.42 -8.24 -42.53 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -9.12 Total: 8.73 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 0.19 Total: 8.13 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.44 Total: -62.13 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.18 Total: -21.04 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.29 -8.24 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479537587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.015 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds