Wall clock time and date at job start Wed Apr 1 2020 00:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47319 * 2 1 4 4 C 1.42896 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.91563 * 26.09063 * 4 3 2 6 6 C 1.55121 * 111.16296 * 262.16894 * 4 3 2 7 7 N 1.47425 * 104.94720 * 205.12802 * 6 4 3 8 8 C 1.34772 * 125.65123 * 203.96470 * 7 6 4 9 9 O 1.21285 * 119.99862 * 180.02562 * 8 7 6 10 10 C 1.50695 * 120.00091 * 0.04404 * 8 7 6 11 11 H 1.09006 * 109.47163 * 60.00000 * 10 8 7 12 12 C 1.52994 * 109.47421 * 299.99786 * 10 8 7 13 13 N 1.46500 * 109.47125 * 179.97438 * 10 8 7 14 14 C 1.34785 * 119.99977 * 204.99979 * 13 10 8 15 15 O 1.21279 * 119.99652 * 0.02562 * 14 13 10 16 16 C 1.50692 * 119.99666 * 180.02562 * 14 13 10 17 17 C 1.53004 * 109.47241 * 179.97438 * 16 14 13 18 18 C 1.47025 * 108.69834 * 24.00105 * 7 6 4 19 19 C 1.54322 * 107.27238 * 358.94200 * 18 7 6 20 20 H 1.09012 * 110.71855 * 96.34581 * 19 18 7 21 21 C 1.53001 * 110.72148 * 219.43771 * 19 18 7 22 22 N 1.46496 * 109.47205 * 291.16242 * 21 19 18 23 23 C 1.36945 * 119.99718 * 179.97438 * 22 21 19 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 21 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 21 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 H 1.08999 * 109.46808 * 59.99455 * 1 2 3 32 32 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46849 * 300.00160 * 1 2 3 34 34 H 1.08995 * 109.47013 * 239.99815 * 2 1 3 35 35 H 1.08997 * 109.46968 * 119.99782 * 2 1 3 36 36 H 1.09005 * 110.42314 * 86.19639 * 6 4 3 37 37 H 1.09003 * 110.21205 * 323.95085 * 6 4 3 38 38 H 1.08996 * 109.47351 * 179.97438 * 12 10 8 39 39 H 1.09006 * 109.47126 * 300.00236 * 12 10 8 40 40 H 1.09004 * 109.47223 * 59.99795 * 12 10 8 41 41 H 0.97003 * 120.00072 * 25.00042 * 13 10 8 42 42 H 1.09000 * 109.47822 * 299.99783 * 16 14 13 43 43 H 1.09004 * 109.47335 * 60.00099 * 16 14 13 44 44 H 1.09005 * 109.47025 * 300.00808 * 17 16 14 45 45 H 1.09004 * 109.46805 * 59.99860 * 17 16 14 46 46 H 1.08995 * 109.47506 * 180.02562 * 17 16 14 47 47 H 1.08998 * 109.88524 * 239.51957 * 18 7 6 48 48 H 1.09003 * 110.00608 * 118.43018 * 18 7 6 49 49 H 1.08997 * 109.46922 * 171.15284 * 21 19 18 50 50 H 1.09000 * 109.46483 * 51.16103 * 21 19 18 51 51 H 0.96996 * 120.00499 * 359.97438 * 22 21 19 52 52 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8909 0.5793 -0.4487 6 6 3.9742 1.7006 1.4323 7 7 5.2637 2.3887 1.2396 8 6 6.2877 2.3982 2.1157 9 8 7.3065 3.0009 1.8513 10 6 6.1671 1.6596 3.4237 11 1 5.9972 0.6006 3.2287 12 6 4.9918 2.2260 4.2228 13 7 7.4039 1.8218 4.1920 14 6 7.7520 0.8997 5.1113 15 8 7.0416 -0.0645 5.3022 16 6 9.0239 1.0669 5.9020 17 6 9.1815 -0.1081 6.8692 18 6 5.2472 3.0636 -0.0665 19 6 3.8861 2.7545 -0.7248 20 1 3.1788 3.5648 -0.5472 21 6 4.0545 2.5049 -2.2249 22 7 4.4246 3.7568 -2.8897 23 6 4.6306 3.7782 -4.2434 24 1 4.5206 2.8721 -4.8207 25 6 4.9807 4.9644 -4.8735 26 7 5.1153 6.0686 -4.1698 27 14 5.2625 4.9935 -6.7199 28 1 5.6224 6.3703 -7.1441 29 1 6.3669 4.0634 -7.0668 30 1 4.0214 4.5700 -7.4167 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 4.1240 0.7512 1.9467 37 1 3.2871 2.3331 1.9944 38 1 4.9043 1.6915 5.1687 39 1 5.1617 3.2850 4.4178 40 1 4.0717 2.1050 3.6510 41 1 7.9723 2.5928 4.0391 42 1 9.8745 1.0937 5.2208 43 1 8.9811 1.9984 6.4664 44 1 8.3309 -0.1345 7.5504 45 1 9.2241 -1.0398 6.3051 46 1 10.1012 0.0130 7.4414 47 1 6.0558 2.6833 -0.6907 48 1 5.3579 4.1396 0.0683 49 1 3.1161 2.1368 -2.6396 50 1 4.8376 1.7636 -2.3841 51 1 4.5237 4.5705 -2.3712 52 1 5.3603 6.8974 -4.6100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479537587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:06 Heat of formation + Delta-G solvation = -133.562806 kcal Electronic energy + Delta-G solvation = -30664.682436 eV Core-core repulsion = 26470.502548 eV Total energy + Delta-G solvation = -4194.179887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82570 -40.70189 -39.61491 -37.79868 -36.52686 -36.16155 -34.13124 -33.74237 -32.50308 -31.89417 -30.78222 -29.48193 -27.38139 -26.27970 -25.35367 -24.08409 -23.79461 -23.02665 -21.58569 -21.34987 -20.65747 -19.25711 -18.70836 -18.25440 -17.85118 -17.21265 -16.78580 -16.70336 -16.51808 -16.37760 -16.16009 -15.68782 -15.39331 -15.21857 -14.97163 -14.84956 -14.62122 -14.34842 -14.20206 -14.03004 -13.59334 -13.57840 -13.31479 -13.18795 -13.12776 -12.98254 -12.80838 -12.79017 -12.66862 -12.62241 -12.42642 -12.23902 -12.21480 -12.01998 -11.96586 -11.74400 -11.62977 -11.15869 -10.97287 -10.94023 -10.49723 -10.28437 -9.85995 -9.02598 -7.95805 -5.25397 1.32503 1.44684 1.46511 1.49827 1.55820 1.63703 2.20841 2.53744 2.64658 3.14746 3.33841 3.37275 3.50865 3.75197 3.82128 3.95693 3.98629 4.00998 4.12448 4.22729 4.25899 4.28114 4.29377 4.34638 4.45826 4.52916 4.55472 4.59401 4.68356 4.70713 4.74293 4.77968 4.80391 4.93216 4.98265 5.01346 5.07009 5.07307 5.10987 5.12220 5.22165 5.24661 5.35752 5.38932 5.47922 6.24397 6.25622 6.28624 6.43640 6.83617 7.15371 7.32209 8.05992 8.29421 9.27410 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.002635 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.176512 B =10622.093619 C =12841.624426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.382 6.382 4 C 0.094 3.906 5 H 0.092 0.908 6 C 0.080 3.920 7 N -0.604 5.604 8 C 0.523 3.477 9 O -0.571 6.571 10 C 0.136 3.864 11 H 0.115 0.885 12 C -0.158 4.158 13 N -0.714 5.714 14 C 0.512 3.488 15 O -0.578 6.578 16 C -0.140 4.140 17 C -0.136 4.136 18 C 0.127 3.873 19 C -0.092 4.092 20 H 0.088 0.912 21 C 0.168 3.832 22 N -0.744 5.744 23 C -0.247 4.247 24 H 0.076 0.924 25 C -0.076 4.076 26 N -0.969 5.969 27 Si 0.974 3.026 28 H -0.296 1.296 29 H -0.278 1.278 30 H -0.276 1.276 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.415 0.585 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.028 0.972 50 H 0.023 0.977 51 H 0.374 0.626 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -14.324 22.631 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.301 6.301 4 C 0.035 3.965 5 H 0.110 0.890 6 C -0.043 4.043 7 N -0.338 5.338 8 C 0.312 3.688 9 O -0.451 6.451 10 C 0.027 3.973 11 H 0.133 0.867 12 C -0.216 4.216 13 N -0.368 5.368 14 C 0.301 3.699 15 O -0.457 6.457 16 C -0.179 4.179 17 C -0.193 4.193 18 C 0.004 3.996 19 C -0.112 4.112 20 H 0.106 0.894 21 C 0.041 3.959 22 N -0.387 5.387 23 C -0.378 4.378 24 H 0.094 0.906 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.803 3.197 28 H -0.222 1.222 29 H -0.204 1.204 30 H -0.202 1.202 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.252 0.748 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.041 0.959 51 H 0.206 0.794 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.364 -14.618 22.503 26.869 hybrid contribution 0.657 1.017 -1.403 1.853 sum -0.707 -13.601 21.100 25.114 Atomic orbital electron populations 1.21765 0.92993 1.03344 1.02636 1.22817 0.96328 0.82554 1.01343 1.87957 1.19019 1.28390 1.94711 1.23092 0.82203 0.97359 0.93889 0.88977 1.23130 0.83970 0.99049 0.98112 1.48274 1.15855 1.51583 1.18121 1.20739 0.81680 0.80890 0.85496 1.90714 1.30233 1.46126 1.78008 1.20662 0.87520 1.01194 0.87893 0.86746 1.22224 0.96589 1.01750 1.01076 1.45928 1.24299 1.27517 1.39049 1.21461 0.88165 0.80915 0.79316 1.90676 1.55261 1.31887 1.67907 1.21709 0.94091 1.02881 0.99252 1.21533 1.02536 0.96727 0.98530 1.21757 0.97453 0.97176 0.83180 1.22352 0.95232 0.99006 0.94566 0.89396 1.20719 0.97040 0.88511 0.89638 1.42531 1.83747 1.07286 1.05130 1.19579 1.38072 0.94808 0.85380 0.90559 1.25591 1.03242 0.95478 1.02473 1.69814 1.56153 0.99700 1.36267 0.85202 0.78178 0.76210 0.80111 1.22193 1.20438 1.20211 0.93107 0.89080 0.91737 0.92948 0.91087 0.87144 0.88309 0.90534 0.91730 0.88997 0.74797 0.87129 0.86373 0.93006 0.93487 0.89768 0.92551 0.92493 0.95411 0.95906 0.79394 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.75 6.49 71.98 0.47 1.21 16 3 O -0.38 -8.73 10.16 -148.98 -1.51 -10.24 16 4 C 0.09 2.14 3.00 32.06 0.10 2.23 16 5 H 0.09 1.92 7.74 -2.39 -0.02 1.91 16 6 C 0.08 1.48 4.88 86.93 0.42 1.90 16 7 N -0.60 -15.46 3.32 -811.36 -2.70 -18.15 16 8 C 0.52 13.95 7.28 87.66 0.64 14.59 16 9 O -0.57 -19.67 16.16 -3.04 -0.05 -19.72 16 10 C 0.14 2.73 2.33 44.24 0.10 2.83 16 11 H 0.11 2.29 7.28 -2.38 -0.02 2.27 16 12 C -0.16 -2.50 9.29 71.98 0.67 -1.83 16 13 N -0.71 -13.61 4.95 -446.11 -2.21 -15.82 16 14 C 0.51 9.82 7.79 87.65 0.68 10.50 16 15 O -0.58 -14.90 15.64 -3.03 -0.05 -14.94 16 16 C -0.14 -1.61 6.42 29.85 0.19 -1.42 16 17 C -0.14 -1.67 9.20 71.98 0.66 -1.01 16 18 C 0.13 4.15 6.27 86.73 0.54 4.70 16 19 C -0.09 -2.88 2.71 -9.61 -0.03 -2.90 16 20 H 0.09 2.94 8.14 -2.38 -0.02 2.93 16 21 C 0.17 6.58 5.59 86.38 0.48 7.06 16 22 N -0.74 -37.99 5.48 -343.47 -1.88 -39.87 16 23 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 24 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 25 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 26 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 27 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 29 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 30 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.11 1.43 7.36 -2.38 -0.02 1.41 16 37 H 0.10 1.64 7.07 -2.39 -0.02 1.62 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.09 1.19 4.99 -2.38 -0.01 1.18 16 41 H 0.41 7.46 7.79 -92.71 -0.72 6.74 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 0.74 8.10 -2.38 -0.02 0.72 16 45 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 46 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 2.11 7.73 -2.39 -0.02 2.09 16 48 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 51 H 0.37 20.39 7.60 -92.71 -0.70 19.69 16 52 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -75.80 420.42 0.38 -75.42 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -0.51 Total: 35.09 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.98 Total: 19.44 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -6.50 Total: -133.67 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -1.61 Total: -44.90 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -75.80 0.38 -75.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479537587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.148 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds