Wall clock time and date at job start Wed Apr 1 2020 01:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99765 * 2 1 4 4 H 1.08999 * 109.46998 * 9.88868 * 3 2 1 5 5 C 1.50700 * 109.46632 * 129.88837 * 3 2 1 6 6 O 1.21282 * 120.00560 * 3.22879 * 5 3 2 7 7 N 1.34774 * 119.99853 * 183.22171 * 5 3 2 8 8 C 1.46499 * 120.00303 * 174.70475 * 7 5 3 9 9 H 1.09003 * 110.28628 * 327.13358 * 8 7 5 10 10 C 1.54262 * 110.40997 * 89.31398 * 8 7 5 11 11 C 1.54375 * 105.06148 * 118.94144 * 10 8 7 12 12 N 1.48559 * 104.59495 * 23.85167 * 11 10 8 13 13 C 1.46900 * 110.99950 * 200.95535 * 12 11 10 14 14 C 1.50699 * 109.47410 * 285.41994 * 13 12 11 15 15 O 1.21291 * 120.00019 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99837 * 179.72232 * 14 13 12 17 17 C 1.37102 * 120.00275 * 180.27609 * 16 14 13 18 18 H 1.07998 * 119.99578 * 0.02562 * 17 16 14 19 19 C 1.38938 * 120.00349 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00039 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46682 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47604 * 119.99837 * 21 19 17 24 24 H 1.48499 * 109.47249 * 240.00166 * 21 19 17 25 25 C 1.48558 * 104.22358 * 320.51876 * 12 11 10 26 26 H 1.08998 * 110.40599 * 280.58478 * 25 12 11 27 27 C 1.52996 * 110.41318 * 158.25875 * 25 12 11 28 28 C 1.53002 * 109.46899 * 249.88779 * 3 2 1 29 29 C 1.52998 * 109.47349 * 302.57864 * 28 3 2 30 30 C 1.52998 * 109.46889 * 62.58489 * 28 3 2 31 31 H 1.08999 * 109.47212 * 304.64367 * 1 2 3 32 32 H 1.08999 * 109.47400 * 64.64427 * 1 2 3 33 33 H 1.09008 * 109.47220 * 184.64323 * 1 2 3 34 34 H 0.97006 * 120.00036 * 354.70226 * 7 5 3 35 35 H 1.08998 * 110.32209 * 237.84278 * 10 8 7 36 36 H 1.08998 * 110.32517 * 0.04391 * 10 8 7 37 37 H 1.09006 * 110.41225 * 265.07357 * 11 10 8 38 38 H 1.09003 * 110.41159 * 142.63217 * 11 10 8 39 39 H 1.09006 * 109.46852 * 165.41703 * 13 12 11 40 40 H 1.09004 * 109.46963 * 45.42448 * 13 12 11 41 41 H 0.97002 * 120.00236 * 0.28221 * 16 14 13 42 42 H 0.97005 * 120.00072 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.47009 * 61.44942 * 27 25 12 44 44 H 1.09001 * 109.47307 * 181.44785 * 27 25 12 45 45 H 1.08999 * 109.47602 * 301.45759 * 27 25 12 46 46 H 1.09000 * 109.46403 * 182.58146 * 28 3 2 47 47 H 1.09000 * 109.46622 * 64.22102 * 29 28 3 48 48 H 1.09000 * 109.47214 * 184.22057 * 29 28 3 49 49 H 1.08997 * 109.47041 * 304.22342 * 29 28 3 50 50 H 1.08999 * 109.47428 * 57.93043 * 30 28 3 51 51 H 1.08999 * 109.46710 * 177.92531 * 30 28 3 52 52 H 1.09003 * 109.46689 * 297.92278 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2331 2.0491 0.1765 5 6 3.0469 1.3937 1.0902 6 8 3.3082 0.4164 1.7592 7 7 3.6838 2.5587 1.3218 8 6 4.6056 2.6771 2.4542 9 1 4.2675 2.0554 3.2833 10 6 6.0332 2.2748 2.0302 11 6 6.8900 3.5389 2.2562 12 7 6.1465 4.3169 3.2804 13 6 6.5372 5.7327 3.2521 14 6 7.9015 5.8899 3.8726 15 8 8.4907 4.9181 4.2963 16 7 8.4696 7.1096 3.9512 17 6 9.7132 7.2519 4.5105 18 1 10.2378 6.3865 4.8878 19 6 10.2986 8.5093 4.5920 20 7 9.6600 9.5623 4.1334 21 14 11.9933 8.7031 5.3535 22 1 12.4943 7.3752 5.7905 23 1 12.9243 9.2781 4.3497 24 1 11.9082 9.6100 6.5263 25 6 4.7200 4.1505 2.9007 26 1 4.4649 4.8196 2.0789 27 6 3.8131 4.4153 4.1042 28 6 2.6707 1.5696 -1.3546 29 6 3.7172 0.4883 -1.6313 30 6 1.6073 1.5437 -2.4542 31 1 -0.3633 0.5842 0.8454 32 1 -0.3634 0.4401 -0.9286 33 1 -0.3634 -1.0244 0.0832 34 1 3.5318 3.3188 0.7385 35 1 6.3958 1.4556 2.6511 36 1 6.0494 1.9895 0.9784 37 1 6.9750 4.1108 1.3321 38 1 7.8778 3.2671 2.6283 39 1 5.8122 6.3210 3.8146 40 1 6.5652 6.0814 2.2197 41 1 7.9985 7.8868 3.6121 42 1 10.0689 10.4402 4.1900 43 1 3.9504 5.4420 4.4436 44 1 2.7729 4.2641 3.8156 45 1 4.0699 3.7287 4.9108 46 1 3.1534 2.5468 -1.3389 47 1 3.2242 -0.4797 -1.7212 48 1 4.2398 0.7176 -2.5599 49 1 4.4328 0.4566 -0.8098 50 1 0.8423 2.2893 -2.2376 51 1 2.0719 1.7682 -3.4143 52 1 1.1501 0.5549 -2.4942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479717929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:21 Heat of formation + Delta-G solvation = -141.791180 kcal Electronic energy + Delta-G solvation = -30826.177500 eV Core-core repulsion = 26631.640804 eV Total energy + Delta-G solvation = -4194.536697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56241 -40.57069 -39.48890 -38.49059 -36.04460 -35.80406 -35.15920 -33.28935 -32.44161 -32.10378 -29.35550 -28.16016 -27.93173 -26.98369 -25.86963 -25.82410 -22.82726 -21.96165 -21.54566 -21.06270 -20.62535 -19.85236 -18.50833 -18.02420 -17.63591 -17.30131 -16.79075 -16.47401 -16.41412 -16.18424 -15.89656 -15.65037 -15.45837 -15.18814 -14.88833 -14.86308 -14.45571 -14.43909 -14.06613 -13.82866 -13.69087 -13.46287 -13.35285 -12.97898 -12.94787 -12.87902 -12.79788 -12.52351 -12.46023 -12.37236 -12.36156 -12.18377 -12.12435 -12.07071 -12.01796 -11.72401 -11.64676 -11.48044 -11.13655 -10.33687 -10.31553 -10.11700 -9.98688 -9.37933 -8.45680 -5.93630 1.36403 1.41655 1.55396 1.55820 1.84720 2.08229 2.29443 2.78278 3.01704 3.21023 3.35114 3.41698 3.65981 3.71197 3.77162 3.92229 4.02295 4.14978 4.17001 4.23394 4.32181 4.35167 4.41850 4.43054 4.50193 4.54737 4.58498 4.68660 4.69713 4.81603 4.82797 4.86982 4.87553 4.95038 5.01480 5.02672 5.03143 5.11965 5.16137 5.35608 5.36914 5.40852 5.42746 5.44370 5.84439 5.95131 6.09119 6.10425 6.55239 6.63001 7.15386 7.23533 7.59105 8.15962 8.71938 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025622 B = 0.001983 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.537141 B =14117.528497 C =14281.323930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.383 6.383 3 C 0.079 3.921 4 H 0.120 0.880 5 C 0.506 3.494 6 O -0.570 6.570 7 N -0.705 5.705 8 C 0.157 3.843 9 H 0.080 0.920 10 C -0.123 4.123 11 C 0.042 3.958 12 N -0.504 5.504 13 C 0.050 3.950 14 C 0.442 3.558 15 O -0.617 6.617 16 N -0.575 5.575 17 C -0.330 4.330 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.060 3.940 26 H 0.086 0.914 27 C -0.134 4.134 28 C -0.101 4.101 29 C -0.143 4.143 30 C -0.144 4.144 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.416 0.584 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.102 0.898 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.030 0.970 50 H 0.073 0.927 51 H 0.068 0.932 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.883 -9.455 -15.257 29.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.301 6.301 3 C 0.017 3.983 4 H 0.137 0.863 5 C 0.293 3.707 6 O -0.447 6.447 7 N -0.360 5.360 8 C 0.051 3.949 9 H 0.098 0.902 10 C -0.163 4.163 11 C -0.086 4.086 12 N -0.229 5.229 13 C -0.082 4.082 14 C 0.229 3.771 15 O -0.503 6.503 16 N -0.213 5.213 17 C -0.459 4.459 18 H 0.094 0.906 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.201 1.201 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.049 4.049 26 H 0.103 0.897 27 C -0.192 4.192 28 C -0.120 4.120 29 C -0.200 4.200 30 C -0.201 4.201 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.120 0.880 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.070 -10.963 -13.945 28.315 hybrid contribution 0.762 1.209 -0.414 1.487 sum -21.308 -9.755 -14.358 27.484 Atomic orbital electron populations 1.23149 0.79176 1.03902 1.01351 1.88005 1.21429 1.26014 1.94642 1.22235 0.95139 0.87713 0.93173 0.86258 1.21350 0.82239 0.82486 0.84606 1.90719 1.65798 1.37374 1.50841 1.45913 1.44828 1.14376 1.30846 1.21456 0.88586 0.96056 0.88768 0.90173 1.22629 0.94681 0.97027 1.01938 1.23016 0.98023 0.94444 0.93096 1.64985 1.03262 1.08162 1.46472 1.21915 0.94250 0.91008 1.00999 1.20808 0.89218 0.82977 0.84068 1.90499 1.66311 1.39737 1.53765 1.41918 1.17017 1.07998 1.54408 1.19648 0.94582 0.94500 1.37199 0.90621 1.25983 1.03275 0.94257 0.97763 1.69670 1.39992 0.99578 1.46857 0.84909 0.77405 0.78101 0.78153 1.20063 1.19558 1.19629 1.22905 0.88594 0.94773 0.98597 0.89666 1.21727 0.98625 1.02168 0.96670 1.21544 0.97168 1.00374 0.92866 1.21725 0.98069 0.99176 1.01061 1.21825 0.98096 1.02471 0.97691 0.93286 0.91571 0.89062 0.74633 0.92241 0.89890 0.92791 0.92493 0.86983 0.90510 0.76966 0.91354 0.91929 0.89994 0.93355 0.87954 0.93030 0.91289 0.95055 0.90845 0.91326 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.45 113.37 1.18 1.40 16 2 O -0.38 -7.13 8.71 -129.96 -1.13 -8.26 16 3 C 0.08 1.11 2.37 29.85 0.07 1.18 16 4 H 0.12 0.90 7.59 -2.39 -0.02 0.88 16 5 C 0.51 10.67 5.98 87.66 0.52 11.19 16 6 O -0.57 -18.31 16.21 15.98 0.26 -18.05 16 7 N -0.70 -11.55 4.96 -438.29 -2.17 -13.72 16 8 C 0.16 3.58 2.92 45.89 0.13 3.71 16 9 H 0.08 2.22 7.34 -2.39 -0.02 2.21 16 10 C -0.12 -3.28 6.79 31.49 0.21 -3.06 16 11 C 0.04 1.31 5.92 86.45 0.51 1.82 16 12 N -0.50 -15.85 4.66 -861.24 -4.01 -19.86 16 13 C 0.05 1.64 5.26 85.56 0.45 2.09 16 14 C 0.44 20.96 7.63 87.66 0.67 21.63 16 15 O -0.62 -34.70 14.80 -3.07 -0.05 -34.75 16 16 N -0.58 -29.33 5.29 -307.00 -1.62 -30.95 16 17 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 20 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 21 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.06 1.29 2.58 45.06 0.12 1.41 16 26 H 0.09 1.36 7.61 -2.39 -0.02 1.34 16 27 C -0.13 -2.72 9.34 71.98 0.67 -2.05 16 28 C -0.10 -1.07 2.73 -10.79 -0.03 -1.10 16 29 C -0.14 -2.28 8.82 71.98 0.63 -1.64 16 30 C -0.14 -1.02 8.45 71.98 0.61 -0.42 16 31 H 0.05 0.45 8.08 -2.39 -0.02 0.43 16 32 H 0.07 0.41 7.02 -2.39 -0.02 0.39 16 33 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.42 3.79 7.82 -92.70 -0.73 3.07 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.97 7.95 -2.39 -0.02 1.95 16 37 H 0.05 1.49 7.75 -2.38 -0.02 1.47 16 38 H 0.06 2.24 7.24 -2.39 -0.02 2.22 16 39 H 0.11 3.21 7.18 -2.38 -0.02 3.19 16 40 H 0.08 2.16 7.77 -2.38 -0.02 2.14 16 41 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 42 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 43 H 0.06 1.26 7.31 -2.38 -0.02 1.24 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.17 8.12 -2.39 -0.02 1.15 16 46 H 0.10 0.68 7.57 -2.39 -0.02 0.66 16 47 H 0.05 0.96 7.75 -2.39 -0.02 0.94 16 48 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.03 0.64 7.16 -2.39 -0.02 0.63 16 50 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 51 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 52 H 0.05 0.50 7.04 -2.39 -0.02 0.48 16 Total: -1.00 -78.43 413.48 0.09 -78.34 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.53 Total: 33.04 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 7.04 Total: 17.95 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -7.53 Total: -113.50 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -0.92 Total: -61.06 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -78.43 0.09 -78.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479717929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.452 kcal (2) G-P(sol) polarization free energy of solvation -78.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds