Wall clock time and date at job start Wed Apr 1 2020 00:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 O 1.42901 * 109.47384 * 179.97438 * 3 2 1 5 5 C 1.42894 * 114.00281 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47369 * 179.97438 * 5 4 3 7 7 O 1.21290 * 119.99822 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00453 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00555 * 180.27803 * 8 6 5 10 10 C 1.52999 * 109.47353 * 174.91086 * 9 8 6 11 11 H 1.08998 * 109.45922 * 174.43947 * 10 9 8 12 12 C 1.53036 * 109.46287 * 294.41570 * 10 9 8 13 13 C 1.53118 * 109.27724 * 179.19356 * 12 10 9 14 14 C 1.53116 * 109.16332 * 302.34866 * 13 12 10 15 15 C 1.53042 * 109.28002 * 57.65072 * 14 13 12 16 16 N 1.46841 * 109.52427 * 300.82366 * 15 14 13 17 17 C 1.46900 * 111.00420 * 185.83643 * 16 15 14 18 18 C 1.50702 * 109.46793 * 300.51263 * 17 16 15 19 19 O 1.21293 * 120.00421 * 354.68728 * 18 17 16 20 20 N 1.34781 * 119.99617 * 174.68356 * 18 17 16 21 21 C 1.37103 * 119.99465 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00279 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99679 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00203 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00168 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46853 * 90.00250 * 25 23 21 27 27 H 1.48496 * 109.47468 * 210.00305 * 25 23 21 28 28 H 1.48502 * 109.47372 * 330.00909 * 25 23 21 29 29 H 1.09005 * 109.47416 * 300.00000 * 1 2 3 30 30 H 1.08996 * 109.47171 * 59.99945 * 1 2 3 31 31 H 1.09004 * 109.47478 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47119 * 240.00170 * 2 1 3 33 33 H 1.09001 * 109.47396 * 119.99643 * 2 1 3 34 34 H 1.08998 * 109.46973 * 60.00081 * 3 2 1 35 35 H 1.08996 * 109.47131 * 300.00080 * 3 2 1 36 36 H 1.09003 * 109.47076 * 60.00551 * 5 4 3 37 37 H 1.08996 * 109.47736 * 300.00605 * 5 4 3 38 38 H 0.97008 * 119.99859 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47031 * 294.91715 * 9 8 6 40 40 H 1.09001 * 109.46580 * 54.91124 * 9 8 6 41 41 H 1.08993 * 109.50439 * 299.13978 * 12 10 9 42 42 H 1.09005 * 109.50000 * 59.22001 * 12 10 9 43 43 H 1.09003 * 109.52224 * 62.24972 * 13 12 10 44 44 H 1.08994 * 109.52319 * 182.37820 * 13 12 10 45 45 H 1.08999 * 109.50843 * 177.59683 * 14 13 12 46 46 H 1.09006 * 109.50592 * 297.67555 * 14 13 12 47 47 H 1.09003 * 109.45447 * 60.83658 * 15 14 13 48 48 H 1.08997 * 109.46408 * 180.80641 * 15 14 13 49 49 H 1.09004 * 109.46774 * 60.50988 * 17 16 15 50 50 H 1.08991 * 109.47733 * 180.50965 * 17 16 15 51 51 H 0.96995 * 120.00269 * 0.02562 * 20 18 17 52 52 H 0.97001 * 120.00668 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0014 7 8 6.0741 1.5340 0.0022 8 7 6.3164 3.7393 0.0007 9 6 7.7769 3.6237 -0.0042 10 6 8.3983 5.0159 -0.1320 11 1 9.4815 4.9403 -0.0365 12 6 8.0470 5.6076 -1.4990 13 6 8.6540 7.0086 -1.6145 14 6 8.1285 7.8799 -0.4703 15 6 8.4773 7.2223 0.8669 16 7 7.8733 5.8853 0.9287 17 6 8.0706 5.2790 2.2521 18 6 9.5460 5.1677 2.5386 19 8 10.3539 5.4650 1.6842 20 7 9.9677 4.7377 3.7444 21 6 11.3099 4.6359 4.0048 22 1 12.0293 4.9006 3.2440 23 6 11.7447 4.1931 5.2480 24 7 10.8694 3.8715 6.1740 25 14 13.5734 4.0537 5.6028 26 1 14.0680 5.3369 6.1634 27 1 13.8057 2.9629 6.5832 28 1 14.3002 3.7509 4.3437 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.7283 3.2894 0.8897 37 1 3.7289 3.2885 -0.8903 38 1 5.8993 4.6151 -0.0004 39 1 8.1079 3.1620 0.9261 40 1 8.0897 3.0074 -0.8471 41 1 8.4503 4.9702 -2.2858 42 1 6.9636 5.6702 -1.6008 43 1 9.7401 6.9413 -1.5518 44 1 8.3709 7.4505 -2.5697 45 1 8.5899 8.8660 -0.5222 46 1 7.0464 7.9795 -0.5560 47 1 9.5602 7.1362 0.9575 48 1 8.0920 7.8330 1.6834 49 1 7.5991 5.9029 3.0115 50 1 7.6216 4.2860 2.2675 51 1 9.3216 4.4996 4.4276 52 1 11.1729 3.5620 7.0418 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480309233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:18 Heat of formation + Delta-G solvation = -125.777806 kcal Electronic energy + Delta-G solvation = -30885.259410 eV Core-core repulsion = 26691.417105 eV Total energy + Delta-G solvation = -4193.842305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19577 -39.29978 -37.88143 -37.34276 -34.62066 -34.12314 -33.92545 -32.93398 -31.32226 -31.18974 -28.69120 -27.43842 -26.29992 -25.28328 -24.53841 -22.74082 -21.87385 -21.32340 -20.63591 -19.59470 -19.01931 -17.87431 -17.27962 -16.88557 -16.72459 -15.98292 -15.80659 -15.50209 -15.24562 -14.97888 -14.61848 -14.54157 -14.07230 -13.98573 -13.89688 -13.85162 -13.46101 -13.32103 -13.02898 -12.69713 -12.47705 -12.37319 -12.24444 -12.04420 -11.80190 -11.70441 -11.54443 -11.33356 -11.21025 -11.17518 -11.16421 -10.65243 -10.55894 -10.43208 -10.28815 -10.18970 -10.05388 -9.90913 -9.69581 -9.48900 -9.27507 -8.86975 -8.02917 -7.49462 -6.47936 -3.89426 2.70840 2.81167 3.12659 3.22852 3.28290 3.77327 3.87006 4.12467 4.22250 4.64647 4.68301 4.81949 4.87082 4.90915 4.96355 5.01776 5.02291 5.05795 5.10284 5.16133 5.18086 5.18800 5.39077 5.40878 5.41314 5.67342 5.67911 5.70398 5.82480 5.86241 5.87152 5.91692 5.94370 5.98925 6.06167 6.14890 6.15806 6.19669 6.31049 6.37091 6.44836 6.61339 6.73879 6.86674 7.30316 7.38617 7.48654 7.66323 7.97888 8.35142 8.52049 9.09940 9.45974 9.95693 10.68499 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.002711 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.423332 B =10324.771112 C =12530.121877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.046 3.954 6 C 0.507 3.493 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.128 3.872 10 C 0.055 3.945 11 H 0.100 0.900 12 C -0.106 4.106 13 C -0.119 4.119 14 C -0.111 4.111 15 C 0.038 3.962 16 N -0.509 5.509 17 C 0.035 3.965 18 C 0.406 3.594 19 O -0.595 6.595 20 N -0.554 5.554 21 C -0.303 4.303 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.897 5.897 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.407 0.593 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.188 2.493 -12.467 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.034 4.034 6 C 0.292 3.708 7 O -0.401 6.401 8 N -0.367 5.367 9 C 0.004 3.996 10 C -0.053 4.053 11 H 0.118 0.882 12 C -0.144 4.144 13 C -0.157 4.157 14 C -0.149 4.149 15 C -0.090 4.090 16 N -0.232 5.232 17 C -0.097 4.097 18 C 0.191 3.809 19 O -0.483 6.483 20 N -0.189 5.189 21 C -0.433 4.433 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.537 5.537 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.208 1.208 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.243 0.757 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.105 0.895 50 H 0.110 0.890 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.633 1.691 -12.899 21.913 hybrid contribution 0.994 0.398 1.018 1.478 sum -16.639 2.089 -11.881 20.552 Atomic orbital electron populations 1.21696 0.94740 1.02272 1.01942 1.21451 0.95520 0.95510 1.03722 1.22621 0.80707 0.98203 1.00166 1.88015 1.19366 1.25419 1.95416 1.22182 0.92048 0.86740 1.02438 1.20214 0.88498 0.84856 0.77242 1.90744 1.74587 1.26622 1.48107 1.45819 1.07130 1.08696 1.75093 1.21491 0.78696 0.96942 1.02440 1.22188 1.01266 0.90514 0.91358 0.88217 1.21569 1.00663 0.96273 0.95854 1.21543 1.00814 0.95416 0.97912 1.21538 1.00736 0.97968 0.94663 1.22302 1.01151 0.88860 0.96661 1.62418 1.56338 1.02781 1.01708 1.22130 0.94388 1.01297 0.91860 1.21019 0.90873 0.84998 0.83981 1.90394 1.55959 1.55886 1.46020 1.42059 1.08338 1.56143 1.12313 1.19704 0.82938 1.41700 0.98911 0.87930 1.25299 1.00264 0.96797 0.95439 1.69607 1.34434 1.44259 1.05425 0.85864 0.82111 0.77927 0.78430 1.20372 1.20820 1.19399 0.92507 0.92587 0.91993 0.91012 0.90891 0.93157 0.93290 0.90273 0.90540 0.75709 0.91283 0.91102 0.91904 0.91950 0.91857 0.92508 0.92140 0.92036 0.90485 0.91816 0.89459 0.89043 0.77399 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.06 0.52 5.94 37.16 0.22 0.74 16 4 O -0.36 -4.61 9.88 -55.14 -0.54 -5.15 16 5 C 0.05 0.48 6.42 36.01 0.23 0.71 16 6 C 0.51 7.13 7.91 -10.99 -0.09 7.04 16 7 O -0.53 -10.04 16.50 -14.36 -0.24 -10.28 16 8 N -0.71 -8.77 5.01 -60.29 -0.30 -9.07 16 9 C 0.13 1.89 4.56 -4.04 -0.02 1.87 16 10 C 0.06 0.81 1.72 -67.72 -0.12 0.69 16 11 H 0.10 1.86 5.71 -51.93 -0.30 1.57 16 12 C -0.11 -1.25 5.26 -26.65 -0.14 -1.39 16 13 C -0.12 -1.40 6.00 -26.61 -0.16 -1.56 16 14 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 15 C 0.04 0.56 5.00 -3.83 -0.02 0.55 16 16 N -0.51 -7.37 4.04 -228.13 -0.92 -8.29 16 17 C 0.03 0.58 5.45 -4.98 -0.03 0.56 16 18 C 0.41 8.93 7.18 -10.98 -0.08 8.85 16 19 O -0.59 -14.49 11.22 5.55 0.06 -14.43 16 20 N -0.55 -13.64 5.29 -10.96 -0.06 -13.69 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 23 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 24 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 25 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.41 4.13 7.43 -40.82 -0.30 3.82 16 39 H 0.07 1.21 6.56 -51.93 -0.34 0.87 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.66 7.31 -51.93 -0.38 0.28 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.45 5.66 -51.93 -0.29 1.15 16 48 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 49 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.09 1.50 6.01 -51.93 -0.31 1.18 16 51 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 52 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -32.22 409.20 -9.48 -41.70 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -8.94 Total: 13.64 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.40 Total: 7.04 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.56 Total: -54.59 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.72 Total: -29.86 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.22 -9.48 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480309233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.076 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds